#NEXUS [written Thu May 07 17:30:07 EDT 2020 by Mesquite version 3.61 (build 927) at zioped/127.0.1.1 (George D.F. Wilson, Saugatuck Natural History Laboratory)] BEGIN TAXA; TITLE 'Eophreatoicus-Kakadubeh'; DIMENSIONS NTAX=33; TAXLABELS Kakadubeh_rangemyahwurd Eophreatoicus_kershawi Eophreatoicus_mok Eophreatoicus_kudjamarndi Eophreatoicus_bodmemurrngkudji Eophreatoicus_kurdabeyhmay Eophreatoicus_gudjangah Eophreatoicus_indjangarlwurr Eophreatoicus_karrkkanj Eophreatoicus_ngarradj Eophreatoicus_mawoenewoene Eophreatoicus_binjdjarrang Eophreatoicus_djirrinjbal Eophreatoicus_boywek Eophreatoicus_kudjaldordo Eophreatoicus_djurrukunja Eophreatoicus_warnbi Eophreatoicus_kurrih Eophreatoicus_galunggul Eophreatoicus_nawurlandja Eophreatoicus_nawurlandja_Ga Eophreatoicus_korokoro Eophreatoicus_namarrkon Eophreatoicus_namimminya Eophreatoicus_namarden Eophreatoicus_barrkmarlam Eophreatoicus_balbun Eophreatoicus_wurrkbaba Eophreatoicus_sp.J1 Eophreatoicus_sp.J3 Eophreatoicus_sp.Zi Eophreatoicus_sp.Zu Eophreatoicus_sp.03DJ ; END; BEGIN CHARACTERS; TITLE '(16S)+(COI)'; DIMENSIONS NCHAR=767; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Kakadubeh_rangemyahwurd (A C)(C G)(A G)(C G)GCTCGTATATTTCTTAGAATATGCGTCTGGGAAATAGACTATCAATTA-ATCAAATGAATCAGTGCT-AAACTCACC-ACCCTTCAAATAAATACTCAGAA-----AACACAATC-----------AGGGTAAAGATCACTTATAACTAATCTACCATACCCAAAAC-ATATTACATACAACATAAACACCTTTACCTTGAAGGT(G T)(A G)(A C)(C T)(A T)GGAAACATCAAAAGGAATAGTAGGAATAGGATTAAGAATAATTATCCG(C T)ACTGAACTAGGACAACCAGGAAGATTTATTGGAAACGACCAAACTTACAACGTAATCGTAACAGCACATGCCTTCGTAATAATCTTCTTTATAGTAATACCAATACTAATTGGTGGATTTGGAAATTGACTAGTTCCATTAATATTAGGAGCCCCAGA(C T)ATAGCTTTCCCACGCATAAATAATATAAGATTTTGATTACTACCACCATCCTTACTTCTTCTGCTAAGAAGAGGAATAGTAGAGAGAGGAGTAGGAACTGGATGAACAGTATACCCTCCCCTAGCAGCAATAACAGCCCATAGAGGAGCCTCCGTAGACCTTGCAATTTTCTCTCTTCACTTAGCTGGAGTATCCTCAATCCTAGGAGCAGTTAATTTCATTACAACAATCATTAACATACGCACAACCAGG------TTTGA(C T)CGAGTAACACTATTTACCTGATCGATCCTAATTACAACAATCCTTCTCCTTCTCTCTCTCCCAGTT(A C)TAGCAGGAGCCATT Eophreatoicus_kershawi AGA-ATACGTAAATCTTTTAAAGTAAGTGTCTGGAAAAAAATCTAAATTATTTTTCAAATAAATTAGCGCT-A(A G)TATCGCT-ACCTTTAAAGACATCMCCMCMCA-----GAATTTAGTCMCTTTC----AAGGTAACGATTATTTTTAACAAAACAAACATATTAAAAAT-ATATTAAATTAAMCWTAAATATTTTTGC(C T)ATGAAAATTAATTGGAAACCTTC(A T)AAGGAATAGTAGGAATAGGATTGAGAATACTTATTCGCACAGAACTAAGTCAACCAGGTAGATTTATTGGTAATGACCAAATTTATAACGTTATTGTAACAGCACATGCATTTGTAATAATTTTCTTTATAGTTATACCAATACTTATTGGAGGCTTTGGAAATTGACTAGTTCC(A G)TTAATATTAGGAGCACCAGATATAGCTTTTCCACGTATAAACAATATAAGATTTTGACTACTACCTCCTTCTCTTATTTTACTCTTAGTAAGAGGACTAGTAGAAAGTGGTGTAGGGACAGGATGAACAGTATATCCACCTTTAGCTACAACAGTTGCACATTCCGGAGCCTCAGTAGATTTAGCAATTTTTTCACTACATTTAGCCGGCGTCTCATCTATTCTAGGTGCGGTAAATTTTATCACTACAGTAATTAATATACGAACAACCAGC------TTTGATCGAGTTACACTATTTACATGATCAGTCTTAATTACAGCAGTCCTTTTATTATTATCACTTCCAGTTTTAGCCGGTGCAATC Eophreatoicus_mok AGA-ATACGTAAATTTCTTAGAATGAGTGTCTAGGAAAATTACTCAAAATTTTACTAAATAAAATAGCGCT-ATCTTTGCA-ACCTTTAATATCATACTTA---------GAAATATTTCAACAC-----AGGGTAACGATTGGATATAACAATTACAACATATAAAGAAA-ATATTAATTTAAACAGAAAAACCTATATCTTGATGGTTAATTGGACTCATCTAAAGGAATAGTAGGAATAGGCTTAAGTATAATTATTCGTACAGAATTGGGACAACCAGGAAGATTTATTGGGAATGACCAAATCTATAACGTTATCGTAACAGCACATGCATTTGTAATAATTTTCTTTATAGTAATACCAATATTAATTGGAGGATTTGGAAACTGATTAGTTCCTTTAATACTAGGAGCCCCAGATATAGCTTTCCCCCGTATAAATAACATAAGATTCTGACTACTACCCCCATCATTATTATTACTATTAAGAAGAGGATTGGTAGAAAGGGGAGTTGGTACTGGATGAACAGTCTATCCCCCTCTAGCAGCAGCAGTTGCACACAGGGGAGCCTCCGTAGATTTAGCAATCTTTTCCCTTCACTTAGCAGGAGTATCCTCTATTTTAGGTGCTGTAAATTTTATCACTACAGTAATTAATATGCGAACAACTAGA------TTTGATCGAGTTACATTATTCACATGGTCAGTATTTATTACAGCAGTACTATT(A G)CTGTTATCTCTCCCAGTTTTAGCAGGAGCAATT Eophreatoicus_kudjamarndi AGA-ATCCATAAACCTCCTAGAGTGAGTACCTGGGAAATATGCTCCATTATAAAAAAAATGAAGTAGCGCT-ATAATCGCTACCTTTTAAATCAACTATCAT--------AGAATTATCCAAATA-----AGGGTAACGATTATATATAACTAACCTAACATATAAAAAAT-ATACTAATTAAAATATAAACATTTCTGCTTTGAGAATTAATTGGAAACTTTCAAGGGAATAGTAGGTATGGGATTAAGTATAATTATTCGGACCGAATTAGGACAACCAGGAAGATTTATTGGAAATGATCAAATCTATAATGTCATCGTTACAGCCCACGCATTCGTAATAATTTTTTTTATAGTTATACCTATATTAATTGGTGGATTTGGAAACTGACTGGTCCCTTTAATATTAGGGGCCCCAGATATAGCTTTCCCACGCATAAACAACATAAGATTTTGACTATTACCTCCCTCACTAATCCTTCTCTTAAGTAGAGGATTAGTAGAAAGAGGGGTTGGAACAGGATGAACAGTCTATCCTCCTCTAGCAGCAGCTGTAGCACACTCAGGAGCCTCAGTAGATCTGGCAATTTTCTCATTACATTTAGCTGGAGTTTCATCTATTCTAGGCGCCGTAAATTTTATTACAACAGTAATCAATATACGAACAACCAGA------TTTGATCGAGTAACATTATTTACTTGATCAGTCCTGATTACCGCCGTCCTTCTTCTACTCTCCCTTCCAGTCTTAGCTGGAGCAATT Eophreatoicus_bodmemurrngkudji AGA-ACCCATAAATCTCCTAAAGTTAGTGCCTGAGAAATATACTCTACTATTAAAAAAATAAAGTAGCGCTAACAACTGCT-ACCTTTAAAAAATCACTATCACA-----GATCTAACCAAAATA-----AGGGTCACAATCATATATAACTAATCTAACATATAAAAATT-ATACTAATTAAAATATAAACATTTCTACCTAGAGAATTAATTGGGAACTTCCAAAGGAATAGTAGGTATAGGATTAAGTATAATTATTCGAACCGAATTAGGACAACCAGGAAGATTTATTGGAAATGATCAAATTTATAACGTTATCGTAACAGCCCACGCATTCGTAATAATTTTTTTTATAGTCATACCTATATTAATTGGTGGATTTGGAAACTGACTAGTCCCTCTAATATTAGGAGCCCCAGATATAGCTTTTCCACGAATAAACAACATAAGATTTTGACTATTACCCCCATCATTAGTTCTACTCTTAAGAAGAAGATTAGTAGAAAGAGGAGTAGGAACAGGTTGAACAGTCTACCCTCCTCTAGCAGCAGCCGTAGCACACTCAGGAGCTTCAGTAGACCTGGCAATTTTTTCATTACATTTAGCCGGAGTTTCCTCTATCCTAGGTGCAGTAAATTTTATTACAACAGTAATCAATATACGAACAACCAGC------TTTGATCGAATGACACTATTTACTTGATCAATTCTAATTACCGCTATTCTTTTACTACTTTCTCTTCCAGTTTTAGCTGGAGCAATT Eophreatoicus_kurdabeyhmay AGA-ATACGTAAATCTCCTAGAGTTAGTGCCTGGGAAATACACTCTATTAAAAATAAAATAAAGTAGCGCT-ATAACCGCT-ACCTTTTAGGCCACTATCAC--------AGAATCAGCCAAA-CCCA--AGGGTAACGATCACATGTAACTAACCCAACATATTAAAACT-ATACTAATTAAAAAACAAACATTTCTACCTTGAGAATTAATTGGAAACTTCTAAA?????AGTAGKTATAGGATTAAGTATAATCATTCGAACCGAGTTAGGACAACCAGGAAGATTTATTGGAAATGACCAAATCTATAATGTTATTGTAACAGCCCATGCATTCGTAATAATTTTCTTTATGGTTATACCTATACTAATTGGGGGATTCGGAAACTGGCTAGTCCCTTTAATGCTAGGAGCCCCAGATATAGCTTTCCCACGAATAAACAACATAAGATTTTGACTCTTACCTCCTTCACTAATCCTTCTTTTAAGGAGAGGATTAGTTGAAAGAGGAGTTGGAACAGGATGAACAGTCTACCCTCCTCTAGCAGCAGCCACAGCACATTCAGGAGCTTCGGTAGACCTGGCAATCTTCTCACTACATTTAGCCGGAGTCTCATCTATTCTAGGAGCCGTAAACTTTATTACAACAGTAACCAATATACGAACTACCAGC------T?????????????????????????????????????????????????????????????????????????????????????? Eophreatoicus_gudjangah AGA-ATACGTTAATTCCTTAGGGTTAGTGCCTGGGAAAAAATCTGAATTGTAAAAAAA(A T)TA(A C)(A T)(A T)TAGAGC(C T)TATACTCGCC-ACCTTTCAGACACCAT---CATA-----GAAAATAGTCMCMAA-----AGAGTCAC(C G)ATCACATACTACTAAACCAACATTTTAAAAAT-ACACTAATTTAAAAATAAACATTTCCACCTTGAGAATTAATTGGAAAACTCCAAAGGAATAGTAGGTATAGGATTAAGTATAATTATTCGAACCGAATTAGGACAACCAGGCAGCTTTATTGGTAATGATCAAATTTATAATGTTATCGTAACAGCCCATGCATTCGTTATAATTTTTTTTATAGTTATACCTATACTAATTGGAGGATTTGGAAATTGACTAGTCCCT(C T)TAATATTAGGAGCCCCAGATATAGCTTTTCCCCGAATGAATAATATAAGATTCTGATTATTACCACCATCTCTAATCCTACTTTTAAGAAGAGGATTAGTAGAAAGAGGGGTAGGGACAGGATGAACAGTATACCCCCC(C T)TTAGCAGCAGCCATAGCACATTCAGGGGCTTCAGTCGATTTAGCAATTTTTTCTCTTCATCTTGCCGGAGTTTCATCCATTCTAGGAGCCGTAAACTTTATTACAACAGTAATCAACATACGAACAACTAGT------TTTGATCGAGTAACACTATTTACTTGATCAGTTTTAATTACAGCCGTATTACTTTTACTTTCTTTACCAGTGTTAGCAGGAGCAATT Eophreatoicus_indjangarlwurr AGA-ATACGTTAATTTCTTAGAATTAGTGCTTGGGAAAAACTCTAAATTGTAAAAAAAATAAAATAGAGCT-ATACTCGCC-ACCTTTCAGACACCAT---CATA-----GAAAATAGTCAAA-AA----AGAGTAACGATCACATATTATTTAACCAACATTTTAATAAT-ACACT(A G)ATTTAAAAATAAACATTTCCACTTTGAGAATTAATTGGAAACCTCCAAAAGGATAGTAGGTATAGGACTAAGTATAATTATTCGAACTGAATTAGGACAACCGGGCAGCTTTATTGGTAA(C T)GATCAAATTTATAATGTTATCGTAACAGCCCATGCATTTGTTATAATTTTCTTTATAGTTATACCTATATTAATTGGAGGATTCGGAAATTGACTAGTCCCTTTAATACTAGGAGCCCCAGATATAGCTTTCCCACGAATGAACAATATAAGATTCTGATTATTACCACCATCTCTAATCCTACTTTTGAGAAGAGGATTAGTAGAAAGAGGAGTAGGAACTGGATGAACAGTGTACCCCCCTTTAGCAGCAGCCATAGCACATTCAGGAGCTTCAGTAGATTTAGCAATTTTTTCTCTTCATCTTGCTGGAGTTTCCTCCATCCT(A G)GGAGCCGTAAACTTTATTACAACAGTAATCAATATACGAACAACTAGT------TTCGATCGAGTAACACTATTCACTTGATCAGTTTTAATTACAGCCGTACTACTTTTACTCTCTTTGCCAGTATTAGCAGGAGCAATT Eophreatoicus_karrkkanj AGA-AT(A T)CGT(A G)AATTTCTTAGAATGAGTGTCTAGGAAAAATACTCAAAATTTAACTAAATAAAATAGTGCT-ATCTTTGCA-ACCTTTAATAATATACTT----------AGAATATTTCAACAC-----AGGATAACGATTAGATATAACAATTACAACATGTGAAAAAA-ATATTAATTTAAAC(A C)GAAAAACCTATACTTTG(A C)TGGTTAATTGGACTCATCTAAAGGAATAGTAGGAATAGGCTTAAGTATAATTATTCGTACAGAATTAGGACAACCAGGGAGATTTATCGGGAACGACCAAATTTATAACGTTATCGTGACAGCACATGCATTTGTAATAATTTTCTTTATAGTAATACCAATATTAATTGGAGGATTTGGAAACTGATTAGTTCCTTTAATACTAGGAGCCCCAGATATAGCTTTCCCCCGTATAAATAATATAAGATTCTGGCTTCTACCTCCATCATTATTATTATTATTAAGAAGAGGAATGGTAGAAAGCGGAGTTGGTACTGGATGAACAGTCTATCCCCCTTTAGCAGCAGCAGTTGCACACAGTGGAGCTTCCGTAGATTTAGCAATCTTTTCTCTTCACTTAGCAGGAGTATCCTCTATTTTAGGTGCTGTAAATTTTATCACTACAGTAATTAATATACGAACAACTAGA------TTTGATCGAGTAACATTATTCACATGGTCAGTACTAATTACAGCAGTATTATTACTTCTATCTCTACCAGTTTTAGCAGGAGCAATT Eophreatoicus_ngarradj ACA-ATACATAAATCTCTTAGAGTGTACGTCTGGGAAAAACATTCAAAATTTTATTATATAAAATAGAGCT-ATACCCGCT-ACCTTTAAGATATAAATCCAGAA-----AATATAATCCCATA------AGGGAAACGATCACTTCTAACAAATTCCACATATAAA-AATAATATTACATAAAACATAAA-ATCTCAATCAAGAGGATTAATTGGAAACATCTAAA?GAATGGTTGGAATAGGATYAAGTATAATCATTCGTACCGARTTAGGTCAACCAGGAAGATTTATTGGAAATGATCAAATTTATAATGTAATTGTAACAGCACATGCATTCGTAATAATTTTCTTTATAGTAATACCTATAYTAATTGGTGGGTTTGGAAACTGATTAGTCCCTCTAATATTAGGTGCTCCAGATATAGCTTTCCCTCGTATAAATAATATAAGATTTTGACTTTTACCTCCATCATTATTATTACTATTAMGAAGAGGAATGGTAGAAAGAGGAGTAGGAACAGGATGAACAGTTTAYCCTCCTTTAGCAGCAGCAGTAGCTCATAGAGGYGGTTCTGTAGAYATAGCTATTTTTTCGCTACATCTAGCCGGTGTRTCTTCTATTTTRGGAGCTGTAAATTTTATTACAACAGTTATTAATATACGAACAACTAGC------TTTGATCGCGTAACAYTATTTACATGATCCGTATTAATCACAGCAGTCCTTCTTTTATTRTCACTRCCAGTTTTAGCAGGAGCAATC Eophreatoicus_mawoenewoene ACA-ATACATAAATCTCTTAGAGTGTACGTCTGGGAAAAACATTCAAAATTTTATTATATAAAATAGAGCT-ATACCCGCT-ACCTTTAAGATATAAATTCAGAA-----AATATAATCCCAT-A-----AGGGTAACGATCACTTCTAACAAATTCCACATTTAAA-AATAATATTACATAAAACATAAA-ATCTCAATCAAGAGGATTAATTGGAAACATCTAAAGGAATGGTGGGAATAGGATTAAGTATAATCATTCGTACCGAATTAGGTCAACCAGGAAGATTTATTGGAAATGATCAAATTTATAATGTAATTGTAACAGCACATGCATTCGTAATAATTTTCTTTATAGTAATACCTATACTAATTGGTGGGTTTGGGAACTGATTAGTCCCTCTAATATTAGGTGCTCCAGATATAGCTTTCCCTCGTATAAATAATATAAGATTTTGACTTTTACCTCCATCATTATTATTACTATTAAGAAGAGGAATGGTAGAAAGAGGAGTAGGAACAGGATGAACAGTTTATCCTCCCTTAGCAGCAGCAGTAGCTCATAGAGGCGGTTCTGTAGATATAGCTATTTTTTCGCTACATCTAGCCGGTGTGTCTTCTATTTTAGGAGCTGTAAATTTTATTACAACAGTTATTAATATACGAACAACTAGC------TTTGATCGCGTAACATTATTTACATGATCCGTATTAATCACAGCAGTCCTTCTTTTGTTGTCACTACCAGTTTTAGCAGGAGCAATC Eophreatoicus_binjdjarrang AGA-ACACGTAAATCTCCTAGAGTAAGCGTCTGGGAAAAATATTCAAAACTAAATTTTACGAACTAGAGCT-AAACCCGCT-ACCTTTATTTAATTAAATTCTGA-----GAA(A G)TATAATTTT-------AAGGTAACGATTATTATAAACAAACTTCCCATATAAA-AATAATATCTTATAAGACATTAA-ATCTCAGCCAAGAGGATTAATTGAAACCTTCTAAA???ATAGTTGGAATAGGCTTGAGTATAATTATTCGGACCGAACTAGGTCAACCAGGAAGATTTATTGGAAATGATCAAATCTATAACGTAATTGTAACAGCACATGCATTTGTAATAATTTTCTTTATAGTTATACCTATACTAATTGGCGGATTCGGTAATTGATTAGTACCACTTATATTAGGTGCACCAGATATAGCATTTCCACGAATAAATAACATAAGATTTTGATTACTACCTCCATCTTTACTCTTACTTCTAACTAGAGGAATAGTTGAAAGAGGAGTTGGAACTGGGTGAACAGTTTATCCTCCTTTAGCAGCAACAGTAGCACATAGAGGAGGTTCTGTGGATATAGCTATCTTTTCACTTCATTTAGCTGGAGTATCATCAATTCTGGGGGCCGTAAACTTTATTACAACAGTTATCAATATACGAACAACCAGA------TTTGATCGAGTAACACTCTTTACATGATCAGTTTTAATTACAGCAGTA??????????????????????????????????????? Eophreatoicus_djirrinjbal AGA-ATACGTAAATTTCTTAGAGTGAGCGTCTAGGAAAACCACTTAAATTTAAACTAAATAAAATAGCGCT-ATCCTTGCA-ACCTTTA-AT(A G)ATATA---CTTA-----GAAATATTTTAATAC-----AGGGTAACGATTACATACAACAATTATAACATATAAAAAAA-GTATTAACTTAAACAA(A G)AAAACTTATACTTTGATGGTTAATTGGACTCATCTAAA???????????????????????????????TTCGCACAGAATTAGGACAACCAGGAAGATTTATTGGAAATGACCAGATCTATAATGTTATCGTAACAGCACACGCATTTGTAATAATTTTTTTTATAGTGATGCCAATACTAATTGGAGGATTTGGCAACTGGTTAGTTCCTTTAATA(C T)TAGGAGCCCCAGATATAGCTTTTCCACGAATAAACAATATAAGATTCTGACTCCTACCGCCATCATTATTATTATTATTAAGAAGAGGTTTAGTAGAAAGTGGAGTTGGTACTGGATGAACAGTTTACCCACCTTTAGCAGCAGCAGTTGCACATAGAGGGGCTTCCGTAGACTTAGCAATCTTTTCCCTTCACTTAGCAGGAGTATCCTCCATCCTGGGTGCTGTAAATTTTATTACCACAGTAATTAATATACGAACAACTAGA------TTTGATCGAGTAACGTTATTTACATGATCAGTATTAATTACGGCAGTATTACTACTATTATCTCTCCCAGTTTTAGCAGGAGCA??? Eophreatoicus_boywek AGA-ATACGTAAATTTCTTAGAACGAGTGTCTGGGAAATACACCACAAATTA-ATTAAATAAA(A G)TAGCGCT-AATTTCACT-ACCTTTAGGTAACTA----CTTA-----GAAATAAACCAAA-------AGGGTAACGATCATCTATAACTAATATACCATATTTAAAACAATATTATATAAAACATAAACACCTTAACCTTGAAGGTTAATTGGAAACATCTAAAGGAATAGTAGGAATAGGATTAAGAATAATTATTCGAACAGAATTAGGACAGCCAGGTAGATTTATCGGAAATGATCAAATTTATAATGTAATTGTAACAGCACATGCTTTCGTTATAATCTTCTTTATAGTTATACCAATATTAATTGGAGGATTTGGAAATTGACTAGTTCCATTAATATTAGGAGCTCCAGACATAGCTTTCCCACGAATAAACAATATGAGATTTTGATTACTACCACCATCCTTACTACTACTTTTAAGAAGAGGATTAGTAGAAAGAGGAGTAGGAACAGGATGAACAGTATATCCTCCTCTAGCAGCAGCAGTAGCACATAGAGGAGCCTCTGTAGATCTTGCAATTTTTTCTCTTCATTTAGCTGGAGTTTCTTCAATTCTAGGAGCAGTAAATTTCATCACAACAGTTATTAATATACGTACAACCAGA------TTTGATCAGGTAACATTATTTACATGATCAGTTCTAATTACAGCTGTTCTCCTT????????????????????????????????? Eophreatoicus_kudjaldordo AGA-ACACGTAAATTTCTAAGAGTAAGTGTCTGGGAAATAAGCTCCAAATTTAAATAAATAAAACAGCGCT-GTTTTTGCA-ACCCTTA----CTAAAACCCTAA-----GAGACATTTTATAGACCCCAAGGGT(A C)ACGACTATATGTAGCAACCATTCCATATAAA-AATAATATTAATTTAAACATAAAAATCTCTAACTTGAGGATTAATTGGAAACCTCTAAA??????????????????????????????ATCCGAACCGAACTAGGTCAACCTGGAAGTTTCATTGGAAACGATCAAATCTATAACGTAATCGTAACAGCCCACGCATTTGTAATAATTTTCTTCATAGTTATACCAATCCTAATTGGAGGATTTGGAAATTGATTAGTCCCTTTAATATTAGGGGCACCAGATATAGCTTTCCCTCGGATAAATAATATAAGATTCTGGTTATTACCCCCATCATTACTCCTATTATTAAGAAGGGGATTAGTAGAAAGAGGAGTGGGAACCGGATGAACAGTCTACCCACCT(C T)TAGCAGCAACAATTGCACATAATGGGGCATCCGTAGACCTTGCAATCTTTTCACTACATTTAGCAGGAGTCTCTTCTATCTTAGGAGCCGTAAACTTTATTACAACAGTTATTAACATGCGAACAACCAAA------TTTGATCAAGTGACCCTATTTACATGATCCGTACTGATTACAGCGGTACTACTATTGCTATCCCTGCCAGT???????????????? Eophreatoicus_djurrukunja AGA-ATACGTAAATTTCTTAGAACGAGCGTCTGGGAAATATACTACAAATTA-ATTAAATAAAATAGCGCT-AATTTCACT-ACCTTTAGGTACATA----CTTA-----GAAAAAACCACGA-------AGGGTAACGATCATTTATAACTAATATACCATATTTAAAAC-ATATTATATAAAACATAAACACCTTTACCTTGAAGGTTAATTGGAAATATCTAAAGGAATAGTAGGAATAGGATTAAGAATAATTATTCGAACAGAATTAGGACAGCCAGGTAGATTTATTGGAAATGATCAAATCTATAATGTAATTGTTACAGCACATGCTTTCGTAATAATCTTCTTCATGGTTATACCAATATTAATTGGAGGATTTGGAAACTGACTAGTTCCATTAATATTAGGAGCTCCAGATATAGCTTTCCCACGAATAAACAATATAAGATTTTGATTACTACCACCATCCTTACT(A T)TTACTTCTAAGAAGAGGGTTAGTAGAAAGAGGAGTAGGAACAGGATGAACAGTATATCCTCCTCTGGCAGCAGCAACAGCACATAGAGGAGCTTCTGTAGATTTAGCAATTTTTTCTCTTCACCTAGCTGGAGTATCTTCAATTCTAGGAGCAGTAAATTTCATCACAACAGTTATTAATATACGTACAACCAGA------TTCGATCGTGTAACACTATTTACATGATCAGTTCTAATTACAGCTGTTCTCCTTCTTCTTTCTCTTCCAGTTTTAGCAGGAGCTATT Eophreatoicus_warnbi AGA-AC(A T)CGTAAATCTCCTAGAGTAAGCGTCTGGGAAAAATACTCAAAATTAAATTTTACGAATTAGAGCT-AAA(C T)CC(A G)CT-ACCTTTATTTTAATCAAATTCTG---ARAAAATATAATTTT-------AAGGTAACGATTATTATAAACAAACCTCCCATATAAA-AATAATATCTCATAAGACATCAA-ATCTCAACCAAGAGGATTAATTGAAACCATCTAAAGGAATAGTTGGAATAGGCTTGAGTATAATTATTCGGACCGAACTAGGTCAACCAGGAAGATTTATTGGAAATGATCAAATCTATAATGTAATTGTGACAGCACATGCATTTGTAATAATTTTCTTTATAGTTATACCTATACTAATTGGTGGATTCGGTAATTGATTAGTACCACTTATATTAGGTGCACCAGATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTACCTCCATCTCTACTTTTACTTCTAACTAGAGGAATAGTTGAAAGAGGAGTTGGAACGGGGTGAACAGTTTATCCTCCTCTAGCAGCAACAATAGCACATAGAGGAGGTTCTGTGGATATAGCTATCTTTTCACTTCATTTAGCTGGAGTATCATCAATTCTGGGGGCCGTAAACTTTATTACAACAGTTATCAATATACGAACAACTAGA------TTTGATCGAGTAACACTCTTTACATGATCAGTTTTAATTACAGCAGTACTACTTCTACTCTCATTACCAGTCCGTGCAGGAGCTATC Eophreatoicus_kurrih AGA-ATACGTAAATTTCTTAGAATGAGTGTCTGGGAAATATACTACAA(A T)T(A T)A-ATTAAATAAAATAGCGCT-AATTTCACT-ACCCTTAGGTAACATA---CTTA-----GAAATAAACCACA-A-----AGGGTAACGATCATTTATAACTAATATACCATATTTAAAAC-ATATTATATAAAACATAAACACCCTAACCTTGAAGGTTAATTGGAAACATCTAAAGGAATAGTAGGAATAGGATTAAGAATAATTATTCGAACCGAATTAGGACAGCCAGGTAGATTTATTGGAAATGATCAAATTTATAATGTAATTGTAACAGCACATGCTTTCGTAATAATCTTCTTTATGGTTATACCAATATTGATTGGAGGATTTGGAAACTGACTAGTCCCATTAATATTGGGAGCTCCAGATATAGCTTTCCCTCGAATAAACAATATAAGATTTTGACTACTACCCCCATCCTTACTATTACTCCTAAGAAGAGGACTAGTAGAAAGAGGGGTAGGAACAGGATGAACAGTATATCCTCCTTTAGCAGCAGCAGTAGCACATAGAGGAGCCTCTGTAGATCTTGCAATTTTTTCTCTTCATCTAGCTGGAGTGTCTTCAATCCTAGGAGCAGTAAATTTTATTACAACAGTTATTAATATACGTACAACCAGG------TTTGATCGAGTAACACTATTCACGTGGTCAGTTCTAATTACAGCAGTTCTTCTTCTTCTTTCTCTTCCAGTCTTAGCAGGAGCTATT Eophreatoicus_galunggul ACA-ATACATAAATCTCTTAGAGTGTATGTCTGGGAAAAACACTCAAA(A T)TTTTACTATATGAAATAGAGCT-ATATCCACT-ACCTTTAAACAACCAGTCTTAGA-----ATCACATCTTACA-------AGGGTAACGATCACTTCTTACAAATCTCCCATACAAA-AACAATATTACATAAAACATAAAAATCTCAATCAAGAGGATTAATTGGAAACATCTAAAGGAATGGTTGGGATAGGCTTGAGAATAATTATTCGTACAGAACTAGGTCAACCAGGTAGATTTATTGGAAATGATCAAATTTA(C T)AATGTAATCGTAACAGCACATGCATTTGTAATAATTTTCTTTATAGTTATACCTATACTAATTGGTGGGTTTGGAAATTGATTAGTCCCACTTATACTAGGTGCACCAGATATAGCTTTCCCACGAATAAATAATATAAGATTTTGACTCTTACCTCCTTCATTATTACTGCTGTTAAGAAGAGGGATAATTGAAAGAGGAGTAGGAACAGGATGAACAGTTTACCCTCCTTTAGCAGCAGCAACAGCACATAGAGGCGGTTCAGTAGA(C T)ATAGCTATTTTCTCACTTCATCTTGCAGGTGTATCTTCTATTCTAGGAGCAGTAAACTTCATCACAACAGTTATTAATATACGAACAACTAGC------TTTGATCGAGTAACTCTCTTTACATGATCAGTACTAATTACAGCAGTCCTCCTTTTACTGTCATTACCAGTTCTGGCAGGAGCAATC Eophreatoicus_nawurlandja AGA-ATACGTAAATTTCTTAGAATGAGTGTCTGGGAAATATACTACAAATTA-ATTAAATAAAATAGCGCT-AATTTCACT-ACCCTTAGGTAACATA---CTTA-----GAAATAAACCACA-A-----AGGGTAACGATCATTTATAACTAATATACCATATTTAAAAC-ATATTATATAAAACATAAACACCCTAACCTTGAAGGTTAATTGGAAACATCTAAAGGAATAGTAGGAATAGGATTAAGAATAATTATTCGAACCGAATTAGGACAGCCAGGTAGATTTATTGGAAATGATCAAATTTATAATGTAATTGTAACAGCACATGCTTTCGTAATAATCTTCTTTATGGTTATACCAATATTGATTGGAGGATTTGGAAACTGACTAGTCCCATTAATATTGGGAGCTCCAGATATAGCTTTCCCTCGAATAAACAATATAAGATTTTGACTACTACCCCCATCCTTACTATTACTCCTAAGAAGAGGACTAGTAGAAAGAGGGGTAGGAACAGGATGAACAGTATATCCTCCTTTAGCAGCAGCAGTAGCACATAGAGGAGCCTCTGTAGATCTTGCAATTTTTTCTCTTCATCTAGCTGGAGTGTCTTCAATCCTAGGAGCAGTAAATTTTATTACAACAGTTATTAATATACGTACAACCAGG------TTTGATCGAGTAACACTATTCACGTGGTCAGTTCTAATTACAGCAGTTCTTCTTCTTCTTTCTCTTCCAGTCTTAGCAGGAGCTATT Eophreatoicus_nawurlandja_Ga AGA-ATACGTAAATTTCTTAGAATGAGTGTCTGGGAAATATACTA(C T)AAATTA-ATTAAATAAAATAGCGCT-AATTTCACT-ACCCTTAGGTAACATA---CTTA-----GAAATAAACCACA-A-----AGGGTAACGATCATTTATAACTAATATACCATATTTAAAAC-ATATTATATAAAACATAAACACCTTAACCTTGAAGGTTAATTGGAAACATCTAAAGGAATAGTAGGAATAGGATTAAGAATAATTATTCGAACCGAATTAGGACAGCCAGGTAGATTTATTGGAAATGATCAAATTTATAATGTAATTGTAACAGCACATGCTTTCGTAATAATCTTCTTTATGGTTATACCAATA(C T)TGATTGGAGGATTTGGAAACTGACTAGTCCCATTAATATT(A G)GGAGCTCCAGATATAGCTTTCCCTCGAATAAACAATATAAGATTTTGACTACTACC(C T)CCATCCTTACTATTACTCCTAAGAAGAGGACTAGTAGAAAGAGGGGTAGG(A G)AC(A G)GG(A G)TGAACAGTATATCCTCCCTTAGCAGCAGCAGTAGCACATAGAGGAGCCTCTGTAGATCTTGCAATTTTTTCTCT(C T)CAT(C T)TAGCTGGAGTGTCTTCAATCCTAGGAGCAGTAAATTTTATTACAACAGTTATTAATATACG(C T)ACAACCAGG------TTTGATCGAGTAACACTATTCACGTGGTCAGTTCTAATTACAGCAGTTCTCCTTCTTCTTTCTCTTCCAGTCT(A T)(A T)(G T)(C G)A(C G)GAGCTGA? Eophreatoicus_korokoro AGA-ACACGTAAATCTCCTAGAGTAAGTGTCTGGGAAAAATACTCAAACCTAAATTTTATGAATTAGAGCT-AAATCCGCT-ACCTTTATTTTAACCAATTCTAA-----GAAATATAATTTT-T-----AGGGTAACGATTATTCTAAACAAACCTCCCATATAAA-AATAATATCTCATAAGACATCAA-ATCTCAACCAAGAGGATTAATTGAAAACATCTAAA????????????????????AAGTATAATCATTCGAACCGAGTTAGGTCAACCAGGAAGATTTATTGGAAATGATCAAATCTATAACGTAATTGTAACAGCACACGCATTTGTAATAATTTTCTTTATAGTTATACCTATACTAATTGGKGGATTTGGTAACTGATTAGTACCACTTATACTAGGKGCACCAGATATAGCATTCCCACGAATAA(A T)TAATATAAGATTT(G T)GATTACTACCCCCATC(C T)TTACTTCTACTTCTAACTAGAGGAATAGTTGAAAGAGGAGTTGGAACGGGGTGAACAGTCTATCCTCCTCTAGCAGCAACAATAGCACATAGAGGAGGTTCTGTAGATATAGCTATCTTTTCACTTCATTTAGCTGGAGTATCATCAATTCTTGGAGCCGTAAACTTTATTACAACAGTTATCAATATACGAACAACCAGA------TTTGATCGAGTAACACTCTTTACATGATCAGTTTTAATTACAGCAGTACTTCTTCTACTTTCATTACCAGTCCTTGCAGGAGCTATC Eophreatoicus_namarrkon ACA-ATATATAAATCTCTTAGAGTGTACGTCTGGGAAAAACATTCAAAATTTTATTATATGAAATAGAGCT-ATACCCGCT-ACCTTTAAGATATAAAACCAGAA-----AATATAATCCCACAA-----AGGGTAACGATCACTTCTAACAAATTTCCCATATAAA-AACAATATTACATAAAACATAAAAATCTCAATCAAGAGGATTAATTGGAAACATCTAAAGGAATGGTTGGAATAGGATTAAGTATAATCATTCGTACCGAATTAGGTCAACCAGGAAGATTTATTGGAAATGATCAAATTTATAATGTAATTGTAACAGCACATGCATTCGTAATAATTTTCTTTATAGTAATACCTATATTAATTGGTGGTTTTGGAAACTGATTAGTCCCTTTAAT(A G)CTAGGAGCTCCAGATATAGCTTTCCCACGTATAAATAATATAAGATTTTGACTTCTACCTCCATCATTATTATTACTATTAAGAAGAGGGATGGTAGAAAGAGGGGTAGGAACAGGATGAACAGTTTACCCTCCTCTAGCAGCAGCAGTAGCTCATAGAGGTGGTTCTGTAGATATAGCTATTTTTTCACTCCATTTAGCCGGTGTATCTTCTATTTTAGGAGCTGTAAATTTTATTACAACAGTTATTAATATACGAACAACTAGC------TTTGATCGAGTAACATTATTTACATGATCCGTATTAATCACAGCAGTCCTTCTTTTATTATCACTACCAGTTCTAGCAGGAGCAATC Eophreatoicus_namimminya ACA-ATACATAAATCTTTTGGAGTGAAAGTTTGGGAAATATACTCAAAAATTTATTATATAAAATAGAGCT-ATTACCGCT-ACCTTTAAGA---------CCAAATCCTAGAATGTTTCAAACA-----AGGGTAACAATTATTTCTAACAAAATTTCCATTCAAAAAATAATATTACATAAAACACAAAAATTTCAGTCATGAGGATTAATTGGAAACGTCTAAAGGTATGGTTGGAATAGGCTTAAGGATAATTATTCGTACTGAGTTAGGTCA(A C)CCAGGAAGATTCATTGGTAATGACCAAATTTATAATGTAATTGTAACAGCACATGCATTTGTAATAATTTTTTTTATAGTAATACCTATACTAATTGGTGGATTTGGAAACTGATTAGTTCCACTTATACTAGGTGCTCCAGATATAGCTTTCCCACGAATAAACAACATAAGATTTTGACTACTACCTCCTTCTTTACTGTTATTGTTAAGAAGAGGGATAGTAGAAAGAGGAGTAGGAACAGGGTGAACAGTCTACCCCCCACTAGCAGCAGCAACAGCTCATAGAGGTGGCTCTGTAGATATAGCTATTTTTTCACTCCACTTAGCTGGAGTATCCTCTATTTTAGGAGCTGTAAATTTCATTACAACAGTCATTAATATACGAACAACCAGC------TTTGATCGAGTTACCCTTTTTACATGATCAGTTTTAATTACAGCAGTCCTTCTCTTATTGTCATTACCAGTTCTTGCAGGAGCAATC Eophreatoicus_namarden AGA-GTACACAAATTTCCTAGAATAAGCGAAAAGGAAAAAMACTCTAAATTTTATTAAATAAAATAGAGCT-ATTTCCGCT-ACCTTTAAAATTTAA----CCAA-----GAGACTCTCCACA-ATTT--AGGGTAACGATTAGTTATAACAAACTAACCATAAAAAAAAMCATATTACMTTAAMCAAAAMCMCTTTTACCTTGAAAGTTAATTGGAATAATCTAGAGGAATAGTAGGTATAGGATTAAGAATAATTATCCGTACAGAACTAGGCCAGCCAGGTAGATTCATTGGAAATGACCAAATTTATAACGTAATTGTAACAGCTCATGCATTTGTAATAATTTTTTTTATAGTTATACCCATGTTAATTGGAGGATTTGGAAACTGACTAGTTCCTTTAATATTAGGAGCCCCAGATATAGCTTTTCCTCGAATAAATAACATAAGATTTTGACTACTACCTCCATCATTATTATTACTTCTAAGAAGAGGATTAGTAGAAAGGGGAGTTGGAACAGGATGAACAGTCTACCCTCCACTAGCAGCAACAATAGCCCACAGAGGAGCCTCAGTTGATCTTGCAATTTTTTCACTACATTTAGCGGGAGTCTCTTCCATTTTAGGAGCAGTAAACTTTATTACAACAATTATTAATATACGAACAACTGGA------TTTGATCGAATAACACTATTTACATGATCGGTATTAATTACAGCAGTACTTCTTTTATTATCTCTTCCAGTTTTAGCTGGAGCTATT Eophreatoicus_barrkmarlam ATA-ACACATAAATCTTTTGAAGTGTGTGTCTGGGAAATATGCTCAAAATTTTATTTTATAAAATAGAGCT-ATCATCGCA-ACCCTTAATTTACAGAAATTCTCAG---AAAACAAAATATAGA-----A(A G)G(G T)AAACGGTTACCTATAACAATTCCCCCATATTAAAATC-ATATTACATAAAACCTAAAAATCTCAGTTAAGAGGATTAATTGGAAATATCCAAAGGAATAGTTGGAATAGGATTAAGAATAATTATTCGCACTGAACTTGGTCAACCAGGCAGATTCATCGGGAACGACCAAATTTATAACGTAATTGTAACAGCACATGCATTTGTGATAATTTTTTTTATAGTTATACCCATACTAATTGGAGGATTTGGTAACTGATTAATACCATTAATACTAGGAGCACCAGACATAGCTTTCCCGCGAATAAACAATATAAGATTCTGACTCCTTCCTCCATCTCTACTACTACTATTAAGTAGAAGACTAGTCGAAAGAGGAGTGGGAACAGGGTGAACAGTTTACCCTCCCTTGGCAGCAGCAATAGCACATAGTGGTGGTTCTGTAGATATAACTATCTTTTCTTTACACTTAGCCGGAGTATCCTCCATTCTCGGAGCTGTAAATTTTATCTCGACAGTCATTAATATGCGAACAACCAGA------TTTGACCGAGTAACTCTCTTTACCTGATCAGTTCTAATCACAGCAGTACTCCTCCTTCTATCCCTTCCAGTCTTAGCAGGAGCTATC Eophreatoicus_balbun ATA-ACACATAAATCTTTTGAAGTGTGTGTCTGGGAAATATACTCAAAATTTTATTTTATAAAATAGAGCT-ATCATCGCA-ACCCTTAATTTACAAAAATCTCA-GAAAAAAATAAAATAAAGA-----AAGGTAACGATTATATATAACATTTCACCCATATTAAAACC-ATATTACATAAAACCTAAAAATCTCAGTCAAGAGGATTAATTGGAAATATCCAAAGGAATAGTTGGAATAGGATTAAGAATAATTATTCGTACTGAACTTGGCCAACCAGGCAGATTCATTGGAAATGACCAAATCTATAACGTAATTGTAACAGCACATGCATTTGTAATAATTTTTTTTATAGTTATACCTATACTAATTGGGGGATTTGGTAACTGATTAGTACCATTAATACTAGGAGCACCCGACATAGCTTTCCCGCGAATAAACAATTTAAGATTCTGACTCCTTCCTCCATCTCTACTTCTACTACTAAGCAGAAGACTAGTCGAAAGAGGAGTGGGAACGGGGTGAACAGTTTATCCCCCCTTGGCAGCAGCAATAGCACATAGTGGTGCTTCTGTGGATATAGCTATCTTTTCTTTACACTTAGCCGGAGTATCCTCCATTCTTGGGGCTGTAAATTTTATCTCGACAGTCATTAATATGCGAACAACCAGA------TTTGACCGAGTAACTCTATTTACATGGTCAGTTATAATTACAGCAGTACTTCTCCTTCTATCCCTTCCAGTCTTAGCAGGAGCTATC Eophreatoicus_wurrkbaba AAA-ATACATAAATCTTTTAAAGTAAGTGTCTGGGAAAAATATTCATAATTTTAAATAATAAAATAGAGCT-ATCATCGCT-ACCTCTAAATAATAAA--CCTTA-----GTAAATGTATATA-ATTT--AGGGTAACGATTACMTTTAACAAAATTACCATAATAA-AATAATATTAAATWAAACMTCAAAATCTCAATTAAGAGGATTAATTGGAAACATCTAAAGGAATAGTTGGAATAGGTTTAAGAATAATTATTCGCACAGAATTAGGTCAACCAGGAAGATTTATTGGAAATGACCAAATTTATAATGTAATTGTAACAGCACATGCATTTGTAATAATTTTCTTTATAGTTATACCAGTGTTAATTGGCGGATTTGGTAATTGATTAGTACCATTAATATTAGGAGCTCCAGATATAGCTTTCCCACGAATAAATAATATAAGATTCTGATTATTACCACCWTCTTTACTTTTATTATTAAGAAGAGGAATAGTGGAAAGAGGTGTCGGAACTGGATGAACAGTATATCCTCCTCTAGCAGCAGCAACAGCACACAGAGGAGGGTCAGTAGATATAGCTATCTTTTCCTTACATTTAGCTGGTGTATCCTCCATTCTTGGAGCAGTAAATTTTATTACAACAGTTATTAATATACGRACAACTAGT------TTTGATCGAGTAACACTATTTACATGATCAGTTTTAATTACAGCAGTACTTCTTTTACTCTCTCTTCCAGTTTAGC??????????? Eophreatoicus_sp.J1 AGA-ATACGTAAATTTCTTAGAACGAGCGTCTGGGAAATACACTATAAATTA-ATTAAATAAAATAGCGCT-AATTTCACT-ACCTTTAGGTAACATG---CTTA-----GAAATAAACCACT-A-----AGGGTAACGATCATTTATAATTAATATACCATATTTAAAAT-ATATTATATAAAACATAAACACTTTAAACTTGAAGGTTAATTGGAAACATCTAAA???????????????????????????ATTATTCGAACAGAATTAGGACAGCCAGGTAGATTTATTGGAAATGATCAAATTTATAATGTAATTGTAACAGCACATGCTTTCGTTATAATTTTCTTTATGGTTATACCGATATTAATTGGAGGGTTTGGAAATTGACTAGTTCCATTAATACTAGGAGCTCCAGATATAGCTTTCCCACGAATAAATAATATAAGATTTTGATTATTACCCCCATCCTTACTATTACTTCTAAGAAGGGGATTGGTAGAAAGAGGAGTAGGAACAGGATGAACAGTATATCCTCCCCTAGCAGCAGCAGTAGCACATAGAGGAGCCTCTGTAGACCTTGCAATTTTTTCTCTTCATTTAGCTGGAGTGTCTTCAATTCTAGGAGCAGTAAACTTCATCACAACAGTTATTAATATGCGTACAACCAGA------TTTGATCGAGTAACATTGTTCACATGATCAGTTTTAATTACAGCAGTTCTACTTCTTCTTTCCCTTCCAGTTTTAGCAGGAGCTATT Eophreatoicus_sp.J3 AGA-ACACGTAAATCTCCTAGAGTAAGTGTCTGGGAAAAATACTCAAAACTAACTTTAATGAATTAGAGCT-AAATCCGCT-ACCTTTTCATTAAAACTA----------AGAATAAAAAAAA-T-----AGGGTAACGATTATTTCTAACAACTCACCCATATAAA-AATAATTTTTCTTTAAACATCAA-ATTTCAGCCAAGAGGATTAATTAGAAACATCTAAA?????????????????????????????????????????????????????????????????????????????????????????????????????????GCATTTGTAATAATCTTTTTCATAGTTATACCTATACTAATTGGKGGGTTTGGTAATTGATTAGTTCCACTTATACTAGGTGCTCCAGATATAGCATTTCCRCGAATAAATAACATAAGATTTTGATTATTACCTCCATCTTTACTTTTACTTTTAAGTAGAGGTATAGTTGAAAGAGGAGTTGGAACAGGATGAACAGTATACCCTCCTCTAGCAGCAGCAGTAGCACATAGAGGAGGATCCGTAGATATGGCTATCTTTTCATTACATTTAGCTGGAGTATCATCAATCCTCGGAGCCGTAAATTTTATTACAACAGTTATTAATATACGAACAACTAGA------TTTGATCGAGTAACTCTTTTTACATGATCAGTTCTAATTACTGCAGTGCTGCTCCTACTCTCACTTCCAGTCCTTGCTGGAGCTATT Eophreatoicus_sp.Zi AGA-ATACGTAAATTTCTTAGAACGAGTGTCTGGGAAATATACTACAAATTA-AGTAGATAAACTAGCGCT-AATTTCACT-ACCTTTAGGTAACATA---CTTA-----GAAAAAA(A C)C(A C)(A C)(A C)AA------AGGGTAACGATCATTTATAACTAATATACCATATTTAAAAC-ATATTATATAAAACATAAACACCTTTACCTTGAAGGTTAATTGGAAATATCTAAAGGAATAGTAGGAATAGGATTAAGAATAATTATTCGAACAGAATTAGGACAGCCAGGTAGATTTATTGGAAATGATCAAATCTATAATGTAATTGTTACAGCACATGCTTTCGTAATAATTTTCTTCATGGTTATACCAATATTAATTGGAGGATTTGGAAACTGACTAGTTCCATTAATATTAGGAGCTCCAGATATAGCTTTCCCACGAATAAACAATATAAGATTTTGATTACTACCACCATCCTTATTATTACTTCTAAGAAGAGGATTAGTAGAAAGAGGAGTAGGAACAGGATGAACAGTATATCCTCCTCTAGCAGCAGCAACAGCACATAGAGGAGCCTCTGTGGATCTAGCAATTTTTTCCCTTCACCTAGCTGGAGTATCTTCAATTCTAGGAGCAGTAAATTTTATCACAACAGTTATTAATATACGTACAACTAGT------TTCGATCGGGTAACACTGTTTACATGATCAGTTCTAATTACAGCTGTTCTACTTCTTCTCTCTCTTCCAGTTCTAGCAGGAGCTATT Eophreatoicus_sp.Zu AGA?ATACGT(A G)AATTTCTTAGAACGAGTGTCTGGGAAATACACTACAAATTA-ATTAAATAAAATAGCGCT-ACTTTCACT-ACCTTTAGGTAACATA---CTTA-----GAAATAAACCACG-------AAGGTAACGATCATTTATAACTAATATACCATATTTAAAAC-ATATTATATAAAACATAAACACCTTAAACTTGAAGGTTAATTGGA(A C)ACATCTAAA?????????????????ATTAAGAATAATTATTCGAACAGAATTAGGACAGCCAGGTAGATTTATTGGAAATGATCAAATTTATAATGTAATTGTAACAGCACATGCTTTCGTAATAATCTTCTTTATGGTWWW(A C)CCAATATTAATCGGAGGATTTGGAAACTGACTAGTTCCATTAATATTAGGAGCTCCAGATATAGCTTTCCCRCGAATAAATAATATAAGATTTTGACTTCTACCACCATCCTTATTATTACTTC(A T)AA(A G)GAGAGGACTAGTAGAAAGAGGAGTAGGAACAGGATGAACAGTTTATCCTCCTCTAGCAGCAGCAACAGCACATAGAGGAGCCTCTGTAGACCTTGCAATTTTTTCTCTTCATTTAGCTGGAGT(A G)TCTTCAATTCTAGGAGCAGTAAACTTCATTACAACAGTCATTAATATACGCACAACCAGA------TTTGATCGAGTAACATTATTTACATGATCAGTTCTAATTACAGCAGTTCTCCTTCTTCTTTCACTTCCAGTTTTAGCAGGAGCTAT(C T) Eophreatoicus_sp.03DJ AGA-ATACATAAATCTCCTAGAGTAAGTGTCTGGGAAAAATACTCATAATTTTATTTTATAAAGTAGAGCT-TCTATCGCT-ACCTTTATTTTTCTAA--CCTTA-----GAATTTTTATATT-TC----AGGGTAACGATTATCCTTAACAAAATTACCATATTAAAATT-ATATTACATAAAACATCAGAATCTCAATCAAGAGGATTAATTGGACACATCTAAA???ATAGTTGGAATAGGCTTAAGAATAATTATCCGTACAGAATTAGGTCAACCAGGAAGATTTATTGGAAATGACCAAATTTATAATGTAATTGTAACAGCACATGCATTCGTAATAATTTTCTTTATAGTTATACCAATATTAATTGGTGGATTTGGTAATTGGTTAGTACCATTAATATTAGGAGCTCCAGATATAGCTTTCCCACGAATAAATAATATAAGATTTTGATTATTACCTCCATCCTTACTTTTATTACTAAGAAGAGGAATAGTGGAAAGAGGAGTAGGAACTGGGTGAACAGTGTACCCTCCTTTAGCAGCAGCAGTAGCACATARAGGTGGGTCTGTAGATATAGCTATCTTCTCTCTACATTTAGCTGGTGTATCCTCTATTCTTGGAGCAGTAAATTTTATTACAACAATTATTAATATACGAACAACTAGT------TTTGATCGAGTAACATTATTTACATGATCAGTTTTAATTACAGCAGTCCTTCTTCTTCTTTCCCTTCCAGTTTTAGCA????????? ; END; BEGIN TREES[!'Parameters: Trees obtained from file E_16S-CO1_20190224_mergedtrees.nex^n5 trees.']; Title 16S_COI_equal_wts; ID GW169a138ef0f78; LINK Taxa = 'Eophreatoicus-Kakadubeh'; TRANSLATE [0] 1 Kakadubeh_rangemyahwurd, [1] 2 Eophreatoicus_kershawi, [2] 3 Eophreatoicus_mok, [3] 4 Eophreatoicus_kudjamarndi, [4] 5 Eophreatoicus_bodmemurrngkudji, [5] 6 Eophreatoicus_kurdabeyhmay, [6] 7 Eophreatoicus_gudjangah, [7] 8 Eophreatoicus_indjangarlwurr, [8] 9 Eophreatoicus_karrkkanj, [9] 10 Eophreatoicus_ngarradj, [10] 11 Eophreatoicus_mawoenewoene, [11] 12 Eophreatoicus_binjdjarrang, [12] 13 Eophreatoicus_djirrinjbal, [13] 14 Eophreatoicus_boywek, [14] 15 Eophreatoicus_kudjaldordo, [15] 16 Eophreatoicus_djurrukunja, [16] 17 Eophreatoicus_warnbi, [17] 18 Eophreatoicus_kurrih, [18] 19 Eophreatoicus_galunggul, [19] 20 Eophreatoicus_nawurlandja, [20] 21 Eophreatoicus_nawurlandja_Ga, [21] 22 Eophreatoicus_korokoro, [22] 23 Eophreatoicus_namarrkon, [23] 24 Eophreatoicus_namimminya, [24] 25 Eophreatoicus_namarden, [25] 26 Eophreatoicus_barrkmarlam, [26] 27 Eophreatoicus_balbun, [27] 28 Eophreatoicus_wurrkbaba, [28] 29 Eophreatoicus_sp.J1, [29] 30 Eophreatoicus_sp.J3, [30] 31 Eophreatoicus_sp.Zi, [31] 32 Eophreatoicus_sp.Zu, [32] 33 Eophreatoicus_sp.03DJ; TREE '16S COI equal wts 1+' = (1,((32,((16,31),(14,(29,(21,(18,20)))))),(25,((2,((7,8),(6,(4,5)))),((15,(13,(3,9))),((24,(19,(23,(10,11)))),((28,33),((26,27),(30,(22,(12,17))))))))))); TREE '16S COI equal wts 2+' = (1,((32,(29,(14,((16,31),(21,(18,20)))))),(25,((2,((7,8),(6,(4,5)))),((15,(13,(3,9))),((24,(19,(23,(10,11)))),((28,33),((26,27),(30,(22,(12,17))))))))))); TREE '16S COI equal wts 3+' = (1,((32,((16,31),((14,29),(21,(18,20))))),(25,((2,((7,8),(6,(4,5)))),((15,(13,(3,9))),((24,(19,(23,(10,11)))),((28,33),((26,27),(30,(22,(12,17))))))))))); TREE '16S COI equal wts 4+' = (1,((32,((14,(16,31)),(29,(21,(18,20))))),(25,((2,((7,8),(6,(4,5)))),((15,(13,(3,9))),((24,(19,(23,(10,11)))),((28,33),((26,27),(30,(22,(12,17))))))))))); END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTCount = MINSTEPS; TYPESET * UNTITLED = unord: 1- 767; END; BEGIN PAUP; SET MSTAXA = POLYMORPH TCOMPRESS = YES INCREASE = AUTO TAXLABELS = FULL TORDER = RIGHT OUTROOT = PARAPHYL AUTOCLOSE = YES; OUTGROUP 1 - 4; hsearch addseq = random nchuck = 3 chuckscore = 1 nreps = 100 randomize = trees; hsearch start = current nchuck = 0 chuckscore = 0; savetrees / brlens = yes; contree; describe 1 / noplot; END; BEGIN AUTHORS; AUTHOR NAME = 'George D.F. Wilson, Saugatuck Natural History Laboratory' CODE = GW LASTSAVER; END; BEGIN TREES; Title Figure_12A_16S_COI_equal_wts_Consensus; ID GW169a1431e3a79; LINK Taxa = 'Eophreatoicus-Kakadubeh'; TRANSLATE [0] 1 Kakadubeh_rangemyahwurd, [1] 2 Eophreatoicus_kershawi, [2] 3 Eophreatoicus_mok, [3] 4 Eophreatoicus_kudjamarndi, [4] 5 Eophreatoicus_bodmemurrngkudji, [5] 6 Eophreatoicus_kurdabeyhmay, [6] 7 Eophreatoicus_gudjangah, [7] 8 Eophreatoicus_indjangarlwurr, [8] 9 Eophreatoicus_karrkkanj, [9] 10 Eophreatoicus_ngarradj, [10] 11 Eophreatoicus_mawoenewoene, [11] 12 Eophreatoicus_binjdjarrang, [12] 13 Eophreatoicus_djirrinjbal, [13] 14 Eophreatoicus_boywek, [14] 15 Eophreatoicus_kudjaldordo, [15] 16 Eophreatoicus_djurrukunja, [16] 17 Eophreatoicus_warnbi, [17] 18 Eophreatoicus_kurrih, [18] 19 Eophreatoicus_galunggul, [19] 20 Eophreatoicus_nawurlandja, [20] 21 Eophreatoicus_nawurlandja_Ga, [21] 22 Eophreatoicus_korokoro, [22] 23 Eophreatoicus_namarrkon, [23] 24 Eophreatoicus_namimminya, [24] 25 Eophreatoicus_namarden, [25] 26 Eophreatoicus_barrkmarlam, [26] 27 Eophreatoicus_balbun, [27] 28 Eophreatoicus_wurrkbaba, [28] 29 Eophreatoicus_sp.J1, [29] 30 Eophreatoicus_sp.J3, [30] 31 Eophreatoicus_sp.Zi, [31] 32 Eophreatoicus_sp.Zu, [32] 33 Eophreatoicus_sp.03DJ; TREE '16S-COI consensus =wts+' = (1,((32,(14,29,(16,31),(21,(18,20)))),(25,((2,((7,8),(6,(4,5)))),((15,(13,(3,9))),((24,(19,(23,(10,11)))),((28,33),((26,27),(30,(22,(12,17)))))))))))[% ] [%unrooted = on ]; END; BEGIN TREES[!'Parameters: Trees obtained from file 20190325_DNAjactre33_group_freq.nex^n2 trees.']; Title 'Figure 12B 16S-COI =wts jac 33% group freq'; ID GW169b518554833; LINK Taxa = 'Eophreatoicus-Kakadubeh'; TRANSLATE [0] 1 Kakadubeh_rangemyahwurd, [1] 2 Eophreatoicus_kershawi, [2] 3 Eophreatoicus_mok, [3] 4 Eophreatoicus_kudjamarndi, [4] 5 Eophreatoicus_bodmemurrngkudji, [5] 6 Eophreatoicus_kurdabeyhmay, [6] 7 Eophreatoicus_gudjangah, [7] 8 Eophreatoicus_indjangarlwurr, [8] 9 Eophreatoicus_karrkkanj, [9] 10 Eophreatoicus_ngarradj, [10] 11 Eophreatoicus_mawoenewoene, [11] 12 Eophreatoicus_binjdjarrang, [12] 13 Eophreatoicus_djirrinjbal, [13] 14 Eophreatoicus_boywek, [14] 15 Eophreatoicus_kudjaldordo, [15] 16 Eophreatoicus_djurrukunja, [16] 17 Eophreatoicus_warnbi, [17] 18 Eophreatoicus_kurrih, [18] 19 Eophreatoicus_galunggul, [19] 20 Eophreatoicus_nawurlandja, [20] 21 Eophreatoicus_nawurlandja_Ga, [21] 22 Eophreatoicus_korokoro, [22] 23 Eophreatoicus_namarrkon, [23] 24 Eophreatoicus_namimminya, [24] 25 Eophreatoicus_namarden, [25] 26 Eophreatoicus_barrkmarlam, [26] 27 Eophreatoicus_balbun, [27] 28 Eophreatoicus_wurrkbaba, [28] 29 Eophreatoicus_sp.J1, [29] 30 Eophreatoicus_sp.J3, [30] 31 Eophreatoicus_sp.Zi, [31] 32 Eophreatoicus_sp.Zu, [32] 33 Eophreatoicus_sp.03DJ; TREE 'Fig 12B16S-COI = wts jac 33% group freq+' = (1,((32,((16,31)[%bootstrapFrequency = 99 ],(14,(29,(21,(18,20)[%bootstrapFrequency = 84 ])[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 23 ])[%bootstrapFrequency = 18 ])[%bootstrapFrequency = 27 ])[%bootstrapFrequency = 100 ],(25,((2,((7,8)[%bootstrapFrequency = 100 ],(6,(4,5)[%bootstrapFrequency = 70 ])[%bootstrapFrequency = 97 ])[%bootstrapFrequency = 99 ])[%bootstrapFrequency = 93 ],((15,(13,(3,9)[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 99 ])[%bootstrapFrequency = 73 ],((24,(19,(23,(10,11)[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 77 ])[%bootstrapFrequency = 82 ],((28,33)[%bootstrapFrequency = 89 ],((26,27)[%bootstrapFrequency = 100 ],(30,(22,(12,17)[%bootstrapFrequency = 98 ])[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 99 ])[%bootstrapFrequency = 28 ])[%bootstrapFrequency = 41 ])[%bootstrapFrequency = 95 ])[%bootstrapFrequency = 49 ])[%bootstrapFrequency = 63 ])[%bootstrapFrequency = 94 ])[%bootstrapFrequency = 100 ])[%setBetweenDouble = 'string:bootstrapFrequency' ] [%unrooted = on ] [%unrooted = on ] [% setBetweenDouble = bootstrapFrequency ]; END; BEGIN TREES[!'Parameters: Trees obtained from file 20190325_DNA_K12jactre33_group_freq.nex^n2 trees.']; Title 'Figure 12C 16S-COI K=12 jac 33% group freq'; ID GW169b5315e6439; LINK Taxa = 'Eophreatoicus-Kakadubeh'; TRANSLATE [0] 1 Kakadubeh_rangemyahwurd, [1] 2 Eophreatoicus_kershawi, [2] 3 Eophreatoicus_mok, [3] 4 Eophreatoicus_kudjamarndi, [4] 5 Eophreatoicus_bodmemurrngkudji, [5] 6 Eophreatoicus_kurdabeyhmay, [6] 7 Eophreatoicus_gudjangah, [7] 8 Eophreatoicus_indjangarlwurr, [8] 9 Eophreatoicus_karrkkanj, [9] 10 Eophreatoicus_ngarradj, [10] 11 Eophreatoicus_mawoenewoene, [11] 12 Eophreatoicus_binjdjarrang, [12] 13 Eophreatoicus_djirrinjbal, [13] 14 Eophreatoicus_boywek, [14] 15 Eophreatoicus_kudjaldordo, [15] 16 Eophreatoicus_djurrukunja, [16] 17 Eophreatoicus_warnbi, [17] 18 Eophreatoicus_kurrih, [18] 19 Eophreatoicus_galunggul, [19] 20 Eophreatoicus_nawurlandja, [20] 21 Eophreatoicus_nawurlandja_Ga, [21] 22 Eophreatoicus_korokoro, [22] 23 Eophreatoicus_namarrkon, [23] 24 Eophreatoicus_namimminya, [24] 25 Eophreatoicus_namarden, [25] 26 Eophreatoicus_barrkmarlam, [26] 27 Eophreatoicus_balbun, [27] 28 Eophreatoicus_wurrkbaba, [28] 29 Eophreatoicus_sp.J1, [29] 30 Eophreatoicus_sp.J3, [30] 31 Eophreatoicus_sp.Zi, [31] 32 Eophreatoicus_sp.Zu, [32] 33 Eophreatoicus_sp.03DJ; TREE 'Fig 12C 16S-COI K=12 jac 33 group freq+' = (1,((32,((14,(16,31)[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 53 ],(29,(21,(18,20)[%bootstrapFrequency = 80 ])[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 28 ])[%bootstrapFrequency = 36 ])[%bootstrapFrequency = 99 ],(25,((2,((7,8)[%bootstrapFrequency = 100 ],(6,(4,5)[%bootstrapFrequency = 80 ])[%bootstrapFrequency = 98 ])[%bootstrapFrequency = 99 ])[%bootstrapFrequency = 95 ],((15,(13,(3,9)[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 82 ],((24,(19,(23,(10,11)[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 75 ])[%bootstrapFrequency = 90 ],((28,33)[%bootstrapFrequency = 90 ],((26,27)[%bootstrapFrequency = 100 ],(30,(22,(12,17)[%bootstrapFrequency = 99 ])[%bootstrapFrequency = 100 ])[%bootstrapFrequency = 99 ])[%bootstrapFrequency = 33 ])[%bootstrapFrequency = 54 ])[%bootstrapFrequency = 97 ])[%bootstrapFrequency = 67 ])[%bootstrapFrequency = 72 ])[%bootstrapFrequency = 88 ])[%bootstrapFrequency = 100 ])[%setBetweenDouble = 'string:bootstrapFrequency' ] [%unrooted = on ] [%unrooted = on ] [% setBetweenDouble = bootstrapFrequency ]; END; BEGIN SETS; TAXPARTITION * UNTITLED = Kakadubeh : 1, Eophreatoicus : 2- 33; CHARPARTITION * UNTITLED = 16S : 1- 227, COI : 228- 767; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 767; END; BEGIN NOTES; TAXABITS NAME = newlyAddedTaxon on = 1 - 21 23 - 25 27 - 29 33; SUT TAXON = 26 NAME = color INTEGER = 10; ALTTAXNAMES * UNTITLED = K_rangemyahwurd E_kershawi E_mok_LP E_kudjamarndi_R1 E_bodmemurrngkudji_R2 E_kurdabeyhmay_10 E_gudjangah_11 E_indjangarlwurr_12 E_karrkkanj_14 E_ngarradj_N2 E_mawoenewoene_C1 E_binjdjarrang_C2 E_djirrinjbal_S1 E_boywek_Zr E_kudjaldordo_J2 E_djurrukunja_M1 E_warnbi_M2 E_kurrih_05 E_galunggul_Gb E_nawurlandja_01 E_nawurlandja_galunggul E_korokoro_02 E_namarrkon_20 E_namimminya_08 E_namarden_09 E_balbun_4T E_barrkmarlam_4J E_wurrkbaba_13 E_spJ1 E_spJ3 E_spZi E_spZu E_sp03DJ; ALTTAXNAMES UNTITLED = 'E_sp21_E05' 'E_kershawi_E65' 'E_spLP_GW094' 'E_spR1_f3' 'E_spR2_f' 'E_sp10_E82' 'E_sp11_E84' _ 'E_sp14_E111' 'E_spN2_E89' 'E_spC1_E113' 'E_spC2_E38' 'E_spS1_E93' 'E_spZr_E86' 'E209_16s' 'E_spM1_E97' 'E_spM2_E09' 'E_sp05_E115' 'E_spGb_E104' 'E_sp01_E40' 'E_spGa_E44' 'E_sp02_E37' 'E_sp20_E109' 'E_sp08_E106' 'E_sp09_E108' 'E_sp04T_E100' 'E_sp04J_GW093' 'E_sp13_E102' 'E_spJ1_E12' 'E_spJ3_E114' 'E_spZi_E16' 'E202_16s' 'E_sp03DJ_E73'; ALTTAXNAMES 'ms names + ind' = K_rangemyahwurd_E05 E_kershawi_E65 E_mok_LP_GW094a E_kudjamarndi_R1_A07 E_bodmemurrngkudji_R2_A09 E_kurdabeyhmay_10_E82 E_gudjangah_11_E84 _ E_karrkkanj_14_E109 E_ngarradj_N2_E89 E_mawoenewoene_C1_E113 E_binjdjarrang_C2_E38 E_djirrinjbal_S1_E93 E_boywek_Zr_E86 E_sp_E209 E_djurrukunja_M1_E97 E_warnbi_M2_E09 E_spJ3_E115 E_galunggul_Gb_E104 E_nawurlandja_01_E40 E_nawurlanja_Ga_E44 E_korokoro_02_E37 E_namarrkon_20_E109 E_namimminya_08_E106 E_namarden_09_E108 _E_balbun_4T_E100 E_barrkmarlam_4J_GW093 E_wurrkbaba_13_E102 E_spJ1_E12 E_spJ3_E114 E_spZi_E16 E_sp_E202 E_sp03DJ_E73; ALTTAXNAMES original_tags_16S = 'E_sp21_E05' 'E_kershawi_E65' 'E_spLP_GW094' 'E_spR1_f3' 'E_spR2_f' 'E_sp10_E82' 'E_sp11_E84' _ 'E_sp14_E111' 'E_spN2_E89' 'E_spC1_E113' 'E_spC2_E38' 'E_spS1_E93' 'E_spZr_E86' 'E209_16s' 'E_spM1_E97' 'E_spM2_E09' 'E_sp05_E115' 'E_spGb_E104' 'E_sp01_E40' 'E_spGa_E44' 'E_sp02_E37' 'E_sp20_E109' 'E_sp08_E106' 'E_sp09_E108' 'E_sp04T_E100' 'E_sp04J_GW093' 'E_sp13_E102' 'E_spJ1_E12' 'E_spJ3_E114' 'E_spZi_E16' 'E202_16s' 'E_sp03DJ_E73'; ALTTAXNAMES species_names_no_codes = Kakadubeh_rangemyahwurd E._kershawi E._mok E._kudjamarndi E._bodmemurrngkudji E._kurdabeyhmay E._gudjangah E._Indjangarlwurr E._karrkkanj E._ngarradj E._mawoenewoene E._binjdjarrang E._djirrinjbal E._boywek E._kudjaldordo E._djurrukunja E._warnbi E._kurrih E._galunggul E._nawurlandja 'E. nawurlandja [galunggul pop.]' E._korokoro E._namarrkon E._namimminya E._namarden E._barrkmarlam E._balbun E._wurrkbaba E._sp.J1 E._sp.J3 E._sp.Zi E._sp.Zu E._sp.03DJ; END; BEGIN LABELS; TAXAGROUPLABEL Kakadubeh COLOR = (RGB 1 0.91372549 0.56862745) ; TAXAGROUPLABEL Eophreatoicus COLOR = (RGB 0.70588235 1 0.63529412) ; CHARGROUPLABEL 16S; CHARGROUPLABEL COI; CHARGROUPLABEL morph; END; BEGIN CODONS; CODONPOSSET * UNTITLED = N: 1- 227, 1: 228-765\3, 2: 229-766\3, 3: 230-767\3; CODESET * UNTITLED = mtdna.dros: 1- 767; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1588887007561; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 852100098867840665; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 299371252437408542; mqVersion 361; checksumv 0 3 3229747457 null getNumChars 767 numChars 767 getNumTaxa 33 numTaxa 33 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 576027.0 sumSquares -5.534023222112862E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 392; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 2107 924; setLocation 242 28; setFont Arial; setFontSize 18; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; getTreeBlock 0; tell It; setSelected 1; attachments ; endTell; showTrees 3 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 4; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1715 852; setLocation 242 28; setFont Arial; setFontSize 18; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; setActive; endTell; showWindow; endTell; showTreeBlocks #mesquite.lists.TreeblockList.TreeblockList; tell It; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TreeblocksListNumber.TreeblocksListNumber; newAssistant #mesquite.lists.TreeblocksListTaxa.TreeblocksListTaxa; getTable; tell It; rowNamesWidth 464; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1715 852; setLocation 242 28; setFont Arial; setFontSize 18; getToolPalette; tell It; setTool mesquite.lists.lib.ListableVectorWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #299371252437408542 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1715 852; setLocation 242 28; setFont Arial; setFontSize 18; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.silk.AnnotSummary.AnnotSummary; tell It; togglePanel off; endTell; getEmployee #mesquite.silk.CellImages.CellImages; tell It; togglePanel off; toggleAnnotations off; toggleSums off; toggleHistory off; toggleLocations off; endTell; getEmployee #mesquite.silk.StateImages.StateImages; tell It; togglePanel off; toggleStateAnnotations off; toggleCharAnnotations off; toggleLocations off; endTell; getEmployee #mesquite.silk.aaManageImageIndices.aaManageImageIndices; tell It; setLocal; reset; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showDatasList #mesquite.lists.DatasetList.DatasetList; tell It; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.DatasetsListTaxa.DatasetsListTaxa; newAssistant #mesquite.lists.DatasetsListNumChars.DatasetsListNumChars; newAssistant #mesquite.lists.DatasetsListClass.DatasetsListClass; newAssistant #mesquite.lists.MatrixListVisible.MatrixListVisible; getTable; tell It; rowNamesWidth 293; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1715 852; setLocation 242 28; setFont Arial; setFontSize 18; getToolPalette; tell It; setTool mesquite.lists.lib.CharMatricesListWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; endTell; end;