NEXUS
[File created by TreeBASE:  7/26/07  20:58:10]
[Matrix accession#: M749]

BEGIN TAXA;
	TITLE M749;
	DIMENSIONS  NTAX=26;
	TAXLABELS
		Phytophthora_infestans	Phytophthora_cactorum	Peronospora_rubi	Phytophthora_palmivora	Phytophthora_cryptogea	Phytophthora_sojae	Phytophthora_cambivora	Phytophthora_insolita	Phytophthora_richardiae	Phytophthora_macrochlamydospora	Halophytophthora_batemanensis	Pythium_vexans	Pythium_undulatum	Pythium_aphanidermatum	Pythium_graminicola	Pythium_dissotocum	Pythium_ultimum	Pythium_irregulare	Albugo_candida	Dictyuchus_sterilis	Achlya_bisexualis	Thraustotheca_clavata	Achlya_intricata	Saprolegnia_ferax	Phytophthora_capsici	Phytophthora_megasperma
	;
END;

BEGIN CHARACTERS;
	TITLE M749;
	DIMENSIONS NCHAR=722;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Phytophthora_infestans                TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAACAAACTTGGCTTTCTCCCTTCCGTGTAGTCGGTGGA-GG--AGATGC-CAGA-TGTGAAGT-GTCTTGCG----GTTGG---------TTTCCGGACC-G-----ACT-GCGAGTCCTTTGAAAT--GTACTAAAC--TGTACT-TCTCTTTGCTCCAAAAGTGG---TGGC--ATTGCTGGT-TGTGGACGCTGCT--ATTGTAGCGAGTT--GGCGACCGGTTTGTCTGCTGCGGCG-TTAATGGAGAAATGCTCGATTCGTGGTATGGTTGCCTTCGGCTG-AACAATGC-GC-----TTATTGGG-TGATTTTC-CTGCTGTGGCGTGA---TGGACTGGTG---AACCATGGC-TCTTTAG-----CTTGGCATTTGAATCGGCTTTGCTGTT-GCGAAGTAGAGTGGC------------GGCTTCGGCTGC--------CGAGGG--TCGATCCAT-TTG--GGAAAT--GT---------TGTGTA-----CTTCGG-------TATG---CATCTCAA------------------------------
		Phytophthora_cactorum                 TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GG--AGATGC-CAGA-TGTGAAGT-GTCTTGCG----GCTGG---------TTTTCGGACC-G-----ACT-GCGAGTCCTTTTAAAT--GTACTGAAC--TGTACT-TCTCTTTGCTCGAAAAGCG----TGGC--GTTGCTGGT-TGTGGAGGCTGCT--ATTGTAGCAAGTT--GGCGACCGGTTTGTCTGCTGCGGCG-TTAATGGAAGAGTGTTCGATTCGCGGTATGGTTAGCTTCGGCTG-AACAATGC-GC-----TTATTGGA-TGTTTTTT-CTGCTGTGGCGTGA---TGGACCGGTG---AACCATAGC-TCAGTTG-----CTTGGCTTTTGAATCGGCTTTGCTGTT-GCGAAGTAGAGTGGC------------GGCTTCGGCTGT--------CGAGGG--TCGATCCAT-TTG--GGAAAT--GTG--------TGTGTA-----CTTCGG-------TATG---CATCTCAA------------------------------
		Peronospora_rubi                      TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGTTTTCTTCTTTCCGTGTAGTCGGTGGA-GG--ATATGC-CAGA-TGTGAAGT-GTCTTGCG----GCTGA---------TTTTCGGATC-G-----GCT-GCGAGTCCTTTGAAAT--GTACAGAAC--TGTACT-TCTCTTTGCTCGAAAAGCA----TGGC--GTTGCTGAT-TGTGGAGGCTGTC--CGCGTGGCCAGTC--GGCGATCGGTTTGTCTGCTGTGGC--TTAATGGAGGAGTGTTTGATTCGCGGTATGATTGGCTTCGGCTG-AACAG-GC-GC-----TTATTGGA-CGTTCTTT-CTGCTATGGCGGTA---TGGACTGATG---AACCGTAGC-TATGCGTTG--ACTTGGCTTTTGAATTGGCTTTGCTGTT-GCGAAGTAGAGTGGC------------AGTTTCAGCTGT--------CGAGGG--TCGACCCATATTG--GGAAAT-TGTGC-------TGTGCGG----CTTCGGT------CGTGTGGCATCTCAA------------------------------
		Phytophthora_palmivora                TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGGAGGACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTGGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGT-GG--ATGTGC-CAGA-TGTGAAGT-GTCTTGCG----GCTGG---------TCTTCGGATC-G-----GCT-GTGAGTCCTTTGAAAT--GTACTGAAC--TGTACT-TCTCTTTGCTCCAAAAGCG----TGGC--GTTGCTGAT-TGTGGAGGCTGCT--TGCGTAGCCAGTCT-GGCGACCAGTTTGTCTGCTGTGGCG-TTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTG-AACAG-AC-GC-----TTATTGAA-TATTTCTT-CAGCTGTGGTGGTA---TG-ATTGGTG---AACCGTAGC-TATGTGA----GCTTGGCTTTTGAATTGGCTTTGCTGTT-GCGAAGTAGAGTGGC------------GGCTTCGGCTGT--------CGAGGG--TCGATCCAT-TTG--GGAACT-TGTG--------TATGC-------TTCGG-------CATG---CATCTCAA------------------------------
		Phytophthora_cryptogea                TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGG--GGACGCGCAGA-TGTGAAGT-GTCTTGCG----GCTGG---------TCTTCGGTCC-G-----GCT-GCGAGTCCTTTGAAAT--GTACTACAC--TGTACT-TCTCTTTGCTCGAAAAGCG----TGAC--GTTGCTGGT-TGTGGAGGCTGCC--TGTGTGGCATGTC--GGCGACCGGTTTGTCTGCTGCGGCGTTTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTG-AACAG-AC-GC-----TTATTGGG-TGCTTTTC-CTGCTGTGGCTGGA---TGGACTGGTG---AACCGTAGC-TGTGCTAG---GCTTGGCGTTTGAACCGGCGGTG-TGGT-GCGAAGTAGGGTGTC---TG---TTCTGGCGTAAGCTGGG-GTGGA-CGAGGG--TCGATCCAT-TTG--GGAAAC-GTTG--------TGTGCG-----CTTCGG-------CGCG---CATCTCAA------------------------------
		Phytophthora_sojae                    TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGG--AGACGC-CAGA-CGTGAGGT-GTCTTGCGG---CGTGG---------CCTTCGGGCT-G-----CCT-GCGAGTCCCTTGAAAT--GTACTGAAC--TGTACT-TCTCTTTGCTCGAAAAGCG----TGAC--GTTGTTGGT-TGTGGAGGCTGCC--TGTATGGCCAGTC--GGCGACCGGTTTGTCTGCTGCGGCGTTTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTG-AACAATGC-GC-----TTATTGGA-TGCTTTTC-CTGCTGTGGCGGTA---TGGGCTGGTG---AACCGTAGC-TGTGTGAG---GCTTGGCTTTTGAACCGGCGGTGTTGTT-GCGAAGTAGGGTGGC------------GGCTTCGGCTGT--------CGAGGG--TCGATCCAT-TTG--GGAACTCTGTGTT---GTCTCTGCGGCTTGCTGCGGAG--------GTGGCATCTCAA------------------------------
		Phytophthora_cambivora                TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGG--GGACGC-CAGA-CGTGAGGT-GTCTTGCGG----GTGG---------TCTTCGGGCT-G-----CCT-GCGAGTCCCTTGAAAT--GTACTGAAC--TGTACT-TCTCTTTGCTCGAAAAGCG----TGAC--GTTGTTGGT-TGTGGAGGCTGCC--TGTGTGGCCAGTC--GGCGACCGGTTTGTCTGCTGCGGCGTTTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTG-AACAATGC-GC-----TTATTGGA-CGTTCTTC-CTGCTGTGGCGGTA---CGGATCGGTG---AACCGTAGC-TGTGCGAA---GCTTGGCCTTTGAACCGGCGGTGTTGGTCGCGAAGTAGGGTGGC------------GGCTTCGGCTGT--------CGAGGGG-TCAATCCAT-TTG--GGAACT-TGTGT------CTCTGCGGCGCGCTTCGGTGTGCTGCGGGTGGCATCTCA-------------------------------
		Phytophthora_insolita                 TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATGAAACTTGGCTTCCTTCCTTCCGTGTAGTCGGTGGC-GG--GAACGCTCAGA-CGTGAAGT-GTCTTGCCT---TGGCA---------ATTTGTAGGTTGTT---GTG-GCGAGTCCTTTGAAAT--GTA-AGACG--TGTG-T-TCTCTTTGCTGGAAAAGCGT----GTG--GCGCGTGGT-TGTGGAGGCTGCC--TGTGTGGCCAGTC--GGCGACTGATTTCG-TGCTGATGCGTGC---GGAGAGCGGTTCGATTCGCGGTATGGTTGGCTTCGGCTG-ATTTT-CT-GC-----TTATTGGGTTGCTGTTTGCTGCGTCGGCGTTT-GCGGGGTCGGTG---AACCGTAGC-TGCGTTGG---GCTTGGCTTCTGAACTGTGTGC-TGTGCTGCGAAGTATGGTGGCT-G-C---GTGTGCCTTGTGGTACG-CGCGGCCGAGAGACTGTCACCAT-TTG--GGAA------------GTTTGTGTCG------TCGGCCTCG-GCCGGTGGCATCTCAA------------------------------
		Phytophthora_richardiae               TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATGAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGG--GGACGCGCAGA-CGTGAAGT-GTCTTGCGG---CGGCG---------GCTTCT-GCCGGCT---GCT-GCGAGTCCTTTGAAAT--GTA-AGACC--TGTTCT-TCTCTTTGCCCGAAAAGCGT---TGCGT-GAGTGTGGT-TGTGGAGGCTGCCG-TTTGCGGCATGTC--GGCGACTGATTTCG-TGCTGAGGCGTGT---GGGGAGAGGCTCGATTCGCGGTATGGTTGGCTTCGGCTG-AACTT-CT-GC-----TTATTGGTCTTTTTTTCGCGGCTTTGGCGTTTTGCGGGGTCGGTG---TACCGTAGC-TGCGGGTG---GCTTGGCCTTTGAACCGTGTTCGTGCGGAGCGAAGTAAGGTGG---G-C---GTGACTGTAGTGTTATG-GCCGA--GGGGGAC-GCAACCAT-TTG--GGAAAGTAATGC----TTTTCTGCCGGC--TTTGGGGCTGG-CGGGGCTGCATCTCGA------------------------------
		Phytophthora_macrochlamydospora       TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGGAGGACCCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATGAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGG--GGACGCGCAGA-CGTGAAGT-GTCTTGCGG---CGGCG---------GCTTCG-GCCGGCT---GCT-GCGAGTCCTTTGAAAT--GTA-AGACC--TGTTCT-TCTCTTTGCCCGAAAAGCGT---TGCGT-GAGTGTGGT-TGTGGAGGCTGCCG-TTTGCGGCATGTC--GGCGACTGATTTCG-TGCTGAGGCGTGT---GGGGAGAGGCTCGATTCGCGGTATGGTTGGCTTCGGCTG-AACTT-CT-GC-----TTATTGGTCTTTTTTTCGCGGCTTTGGCGTTTTGCGGGGTCGGTG---TACCGTAGC-TGCGGGTG---GCTTGGCCTTTGAACCGTGTTCGTGCGGAGCGAAGTAAGGTGG---G-C---GTGACTGTAGTGTTATG-GCCGA--GGGGGAC-GCAACCAT-TTG--GGAAAGTAATGC----TTTTCTGCCGGC--TTTGGGGCTGG-CGGGGCTGCATCTCGA------------------------------
		Halophytophthora_batemanensis         TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGGACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGTCTGTATCAGTGTCCGTAAAGCACTGTTGCCTCTCTTCCTTCCGTGTAGTCGGTGGCGGG---GACGG-CAGA-CGTGAAGC-GTCTTGC----TGCAGC-------TGTTTTGTGTGTTGCG-------GCAAGTCCTTTGAAA-----ACTGTGT--TCTC-TCTCTGTTTGTCGAAAGCGAGC---TGGAA-GTGTGCGTTGTGTGCGTGCGTGCG-TGCGCGGCGCTGCTGGGCGAGTG--TTCC-TGCGAGGGCGTTTTGGAGAGGGCTTGTTGATTCGCGGTATGTTAGGTTTCGGCCG-GACAAGGC-GC-----TTATCGGCGGGCTGTTCTCTGTTCTTGCGGTTGA-GTGTTCGTTT---TGGCGGCGTGTGCGTGTGT--GTGCTGTGTGCGGAGCGTTGCGCTTTTG-GCGAT-TTGAATCGCGAGTA---GTGCGTTTGCGGAGGCT-GCGTTGTGTGCGTATGCATGCGTGCGG--TGTT-TGCGAGCG---AGGAGGGTGAGTGAATTTGGGAAGTTGTGTGCTGTTGCGCGATGTTGTTGTCGCGCTTGTGGCACAACTCAA
		Pythium_vexans                        TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGGATTGCAGGATTCAGTGAGTCATCGAACTTTTGAACGCATATTGCACTTTCGGGTTACGCCTGGAAGTATGTCTGTATCAGTGTCCGTACACTAAACTTGCGTCTCTTCCGTC-GTGTAGTCGTCGGTTGTTTAGATTG-CAGA-TGTGAGGTTGTCTCGCAACGTGCCCCCCCTTGTTTTTTTGGGGGGTGGATAGGTT-GCGAGTCCCTTTAAAGTCGGACGGTGT--TTTT-TTCCGTTTTGT-----GCTCGA---TGGG----GTGCGGC---TGCGGCCGTGTC-TGCTGGCGGGTCC--GGTGACCT--TTG---GCGATGGCATGA--GAGTGGATTGCTCGATTTGCGGTATGTTAGGCTTCGGCTTTGACAATGCAGC-----TTATTG--GGTGTGTTCGCT--TG--GCTGTTGCTGTATGGGGTG---AGCTGGATGGTCGGTGGGT--GCGTTGT-TGCGTGTCGTTTTCATTGTGTGCGTT-TCGGTTGTCG--TC---GC-CATTTGGGAATTTA-ATGTTTTGGGGG-ACCCCTCAATACAT--CTCA-T----------------------------------------------------------------------------------
		Pythium_undulatum                     TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTCTACCTGGAAGTATGTCTGTATCAGTGTCCGTACACTAAACTTGCCTTTCTTT-TTCTGTGTAGTCAGAGGAGGA---GA-TGGCCGA-TGTGAAGT-GTCTCGA---TCTGTGC-------TCATTTTGTGCCACACTGAT----CGAGTCCTTTTAAATGTACTCTGTTTTGTCTCTTGTTTCTATG-ATGTACTG-----CTGGAA-CGGAGTGATCT--TTGGATTGCTT--GCATGTTTGGTG---GCAAC----TTCG--GTTTAGACGCTA-G-GAGATAATGCTCGATTCGCGGTATGTTAGGCTTCGGCTG-GACAATGTTGC-----TTATTGT-GCGTTGGCT-CTGTTTTTACCTTGAGGTACCATTAT--TTGTGTGAG--ATGTGTCT----A-AGGATTGCTTGCA--AGTAAGGTGTTGCAG-CGTAGTGACGCTTTGG--TGCTGTTTTTCGGAGCGGTGTTGAGGTTGAGTGAAGCACAAT-TTG--GGAAAATTTT--------GTACACTGCTATTTTTGG-TAATTGTGTATCTCAA-----------------------------------
		Pythium_aphanidermatum                TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCACATTGCACTTTCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGCCTTTCTTT-TTCTGTGTAGTCAGGGAGAGA---GA-TGGCAGAATGTGAGGT-GTCTCGC---TGGCTCC-------CTTTTCGGAGG-AGAAGACG----CGAGTCCCTTTAAATGTACGTTCGCT-CTTTCTTGTGTCTAAG-ATGAAGTGTGATTCTCGAATCGCGGTGATCTGTTTGGATCGCTT-TGCGCATTTGG-----GCGAC----TTCG--GTTAGGACATTA-AAGGAAGCAACCTCTATTGGCGGTATGTTAGGCTTCGGCCC-GACGTTGCAGC-----TGACAGA-GTGTGGTTTTCTGTTCTTTCCTTGAGGTGTACCTGAA-TTGTGTGAGGCAATGGTCTGGGCAAATGGTTGCTGTGT--AGTAGGGTTTTGCTG-CTCTTGGACGCCCTGT--T-------TTCGGATAGG-GTAAAGG---AGGCAACACCAAT-TTG--GGAC-TGTTT--------GCA-ATT--TATTG-TGAACAACTTTCTAA----------------------------------------
		Pythium_graminicola                   TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTGGAACGCACATTGAACTTCCGGGATATCCCTGGAAGTATGCTTGTTTCAGTGTCCGTACATCAAACTTGCCTTTCTTT-TTTGGTGTAGCCAAGGAGAGA---AA-TGGAAGAATGTGAGGC-GTCTCGC---TGGCTCC-------CCCTCCGGAGG-AGAAAACG----CGAGTCCCTTTAAATGTACGTCCGC--CTTTCTTGTGTCGAAGTA-GAAGTGTGACTATCGAA-CGCAGTGGTCTGTTTGGATCGCTT-GGCGCGAGTTG-----GCGAC----TTCG--GTTAGGACATTA-AAGGAAGCAACCTCTATTGGCGGTATGTTAGGCTTCGGCCC-GACTTTGCAGC-----TGACAGT-GTGTAGTTTTCTGTTCTTTCCTTGAGGTGTACCTGT--TTGTGTGAGGCAATGGTCTAGCCAAATGGTTATTGTGT--AGTAGGTGGTTGCTG-CTCTTTGGCGCCCTC------------TCG---AGG-GTAAAGG---AGGCAACACCAAT-TTG--GGATTAGTCT--------GTGGATT--TATTCATGG-GCGCTTTTCAAT---------------------------------------
		Pythium_dissotocum                    TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCACATTGCACTTTCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGCCTTTCTTT-TTTTGTGTAGTCAAGAAGAGA---GA-TGGCAGACTGTGAGGT-GTCTCGC---TGACTCC-------CTCTTCGGAGG-AGAAGACG----CGAGTCCCTTTAAATGTACGTTCGCT-CTTTCTTGTGTTTAAAGATGAAGTGTGACTTTCGAA-CGCAGTGATCTGTTTGGATCGCTT-TGCTCGAGTGG-----GCGAC----TTCG--GTTAGGACATTA-AAGGAAGCAACCTCTATTGGCGGTATGTTAGGCTTCGGCCC-GACTTTGCAGC-----TGACTG--GAGTTGTTTTCTGTTCTTTCCTTGAGGTGTACCTGTC-TTGTGTGAGGCAATGGTCTGGGCAAATGGTTATTGTGT--AGTAGGAAGTTGCTG-CTCTTAAGCGCTCTAG--C-------TTCGGTTAGA-GTAAAGG---AGGCAACACCAAT-TTG--GGAT-AGTC---------GTTGATT--TATCAATGGCGCTCTTTCTAA----------------------------------------
		Pythium_ultimum                       TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTT-TTCTGTGTAGTCAGGGATGGA---AT-GTGCAGA-TGTGAAGT-GTCTCGCA--TGGTTGCG--TTCGTTTTTTCGATCGAGAATCTGT---CGAGTCCTTTTAAATGGACACGGTCTTTTCTATGGTTTCTATG----AAGTGTAATGGTTGGAAGGCAGTGATTT--TCGGATTGCTG--GCGGCTTTTG-----GCGAC----TTCG--GTATGAACGT---ATGGAGACTAGCTCAATTCGTGGTATGTTAGGCTTCGGCTC-GACAATGTTGCG----TAATTGT-GTGTGGTCT-TTGTTTGTGCCTTGAGGTGTACTAGAGGTTGTCGGTTTGAACCGT------AAGTGATTGTTTAGT--AGAGCATTTTCACGA-TGTATGGAGACGCTGC--A------TTTAG---TTGCGTAGAG---------AGATTGAT-TTG--GGAA-ATTTT--------GTATCATTGTCAAT-TGCAAGATTGTGTATGGTATCTCAA------------------------------
		Pythium_irregulare                    TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCGTTTCTTCCTTCCGTGTATTCGGTGGAGGA---GAGTTGCAGA-TGTGAAGT-GTCTCGCTG-TGGTTGGTGTTTGTTGTTTGCAATGAATGCACAGCTTGCGAGTCCTTTTAAATGGACACGACTT--TCTCTTTTTTGTATGTGCGCGGTGCTGTGCGTGAA-CGCGGTGGTTT--TCGGATCGCTC--GCGGCTGTCG-----GCGAC----TTCG--GTGAATGCAT-A-ATGGAGTGGACCTCGATTCGCGGTATGTTGGGCTTCGGCTG-GACAATGTTGC-----TTATTGT-GTGTCTGTT-CCGTGTTCGCCT-GAGGTGTACTGATGGCTGTGGGATTGAACTGGTTACTGTTGTTAGTAGTGTGTGTAGCACGTTGTCGTGGATGCATCTGTGTTTTTGCATACTTGTGTGTGTGCAATTGTACAGAA-GAGG-AGTCTCAAT-TTG--GGAAAAGTTTT-------GTATACTCCGGGTTGATCCTGCGTGTATATCTCAA-----------------------------------
		Albugo_candida                        --CAAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCATATCACAAACTTGCCCTTTTT------T---------TGGA------AAGGTGCAGATGCTGAGGT-GTCTTTTTG---GATCAAA-----AGATTTGAAAC----------------GTCCCTTGAAAAGCAGACGATAC--AAGGCTTTCCGTACACATGCTTTGCGTTTGTACATGCTAATCAGTGCGATCTTTCTTTTTGTGACTGGGACGTTGTACTAGTTGCTTTCCACGTTGGGTCACTC-AAATATGCAGTCTTCATTTGCGGTATGTTTTGCTTCGGCTT-GACACATTAGCTCATGAGATTGTATAGTTGGTTGTTCTTGTGGGTAGTACTTAGGATAATGGAAAGGTCATCAAGGAGACGG---AATTGCGTACTGACAAGCTGTACCGAAGTTAAATGCATGGGAAAGACTTT-ATCGTTAATTGGGAAAAGGATGCGTGTTGTTTGCTCTTCGCTCTTGAAGGATGCACTTGCTTGCAGGTACATTCTTTGAGAACGAGTTGTACATGACGCATGTCTCTCAT--------------------------
		Dictyuchus_sterilis                   ------------------------------------------------------------------------------------------------------------------------TTTCGGGTTAGTCCTGGGAGTATGTTTGT------------ATCACACACACTTGTTTCATGTATA-----------TGAA--G---------CAGAATATGAAGT-GTCTTGTA--------------------TAATAACA--------------AGTCCTTTTAAAATGAGA--TACC--TAC-CTACAAACTCGTAAGGA----------A----------GGTATGTATTGTTTGCA-TTTCATATATTGTTT-TGTATGTTACTTC---TT---AACAATGAG--GAATGGAAACAAATT-GCGGTA-GTTTTATCTGTACTTTTGTATGGATGAACAATATATTG-----CTTTTTGT-ATTCATGCCTACAGTTTGGTTGTGGATATACTTGACAAGAAGTGT---AAAATGGTATATACT--------------TGTAGTGTA--GAAGCATATTGGGAAAACCATTCCAAT-------------------------------------------------------------------------------------------------------------------------
		Achlya_bisexualis                     -ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGGAGGACGCTGCGGACTGCGATACGTAATGCGATTTGAAGAATCAGTGAGTCACCGAAATTTGGAACGCATATTGAACTTGCGGGTTAGCCCTGGGAGTATGTTTGTTCCAGTGTCCGTACCAAAC-CAATTGTTTCATGTATT-----------TGAA--G---------CAGAATGTGAAGT-GTCTTGTCC------------------AATTGAACA--------------AGTCCTTTTAAA-TGAAACGTACC--TAT-ATACAACGTAAGAAGCATACCAA---TATA-----AA-GGTGTGTATCATTTGAA-TTTCAA-TATTGTTT-TGTATGAATATAC---AT---GACGTTGA----AAGTAAAATGAATT-GCGGTA-GTTTTGCTTGTACTT--GTACGAGTGAACAATATATTG-----CTTTTTGT-TTTACTG--TAGATGTGTGTATTGAA-GTATAAGATAAGAAGTTT---ATAATGGTATGTACTG--GGTTTGTT-TCTGTAGTGTATAGAAGCAAAT-GGGAAATGTGT-CCAATTTGGACCTGATATCAG---------------------------------------------------------------------------------------------------------
		Thraustotheca_clavata                 -------------------------------------------------------------------------------------------------------------------------TTTGGGTTAGTCCTGGGAGTATGTTTGT------------ATCAAAC-CAATTGTTTCATGTATT-----------TGAA--G---------CAGAACGTGAAGT-GTCTTGCTC------------------TTTAGAACA--------------AGTC-TTTTAAA-TGAAACGTACC--TAT-ATACAACGTAAGAAGCATACCAA---TATA-----AA-GGTGTGTATCATTTGAA-TTTCAAATAATGTTT-TGTATGAATATAC---AT---GACGTTGA----AAGTAAAATGAAT--GCGGTA-GTTTTGCT-GTACTT--GTACAAGTGAACAATATATTG-----CTTTTTGT-TTTGCTG--TAGATGTGTGTATTGCA-ATATAAGATAAGGAGTTT---ATAATGGTATATACTG--GGTT-GTT-TCTGTAGTATATAGAAGCAAAT-GGGAAATATAT-CCAAT-------------------------------------------------------------------------------------------------------------------------
		Achlya_intricata                      ------------------------------------------------------------------------------------------------------TTGAAACGCATATTGCACTTTCGGGTTAGTCCTGGGAGTATGTTTGT------------ATCAAAC-CAATTGTTTCATGTATT-----------TGAA--G---------CAGAATGTGAAGT-GTCTTGTTC------------------TTTTGAACA--------------AGTCCTTTTAAA-TGAAACGTACC--TAT-ATACAACGTAAGAAGCATACCAA---TATA-----AAAGGTGTGTATCATTTGAA-TTTCAA-TATTGTTT-TGTATGAATATAC---AT---GACGTTGA----AAGTAAAATGAATT-GCGGTA-GTTTTGCTTGTACTT--GTACGAGTGAACAATATATTG-----CTTTTTGT-TTTATTG--TAGATGTGTGTATTGCA-GTATGAAATAAGGAGTTT---ATAATGGTATATACTG--GGTT-GTT-TCTTTAGTATATAGAAGCAAAT-GGGAAATATAT-CCAAT-------------------------------------------------------------------------------------------------------------------------
		Saprolegnia_ferax                     ------------------------------------------------------------------------------------------------------------------------TTCCGGGTTAGTCCTGGGAGTATGTTTGT------------ATAACACAACCTTGTTTCATTTCTTGATTGAG---ATGGA--G---------CAGAATGTGAAG--GTCTTGTA----------------------ATTACA--------------AGTCCTTTTAAA-CGACG-GTACC--TATGCGTCCTCGTGAGATGTATT---A---TTTA-----AA-GGTATGCCTGCGCTTC--TTTCGA---GAGTCT-TGTGTGGCGGCAC---AC---AGCATTTCA--AAGAGAGAGCAAATTCGCGGTA-GTTTTGCTTGTATTTCGGTACGAGTGGACAC-ATATTG-----CTTTTTGTGATTTCTG---CGA-GTCTGTTGTTTAAGCACAGGACACGTAAGG----AGAGTGAG-TATGCTG--G----------TGCATTTCTTGGCGCAAAATTGGGAATTCAAT---AAT-------------------------------------------------------------------------------------------------------------------------
		Phytophthora_capsici                  TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GG--ATGTGC-CAGA-TGTGAAGT-GTCTTGCGT---GTTGT---------CCTTCGGGTC-G-----ACT-GCGAGTCCTTTTAAAT--GTACTGAAC--TGTACT-TCTCTTTGCTCGAAAAGCG----TGGT--GTTGCTGGT-TGTGGAGGCTGCC--TGCGTGGCCAGTC--GGCGACCGGTTTGTCTGCTGCGGCGTTTAAAGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTG-AACAGGC--GC-----TTATTGAA-TGCTTTTC-CTGCTGTGGCGTGA---TGGGCTGGTG---AACCGTAGC-TGTGTTTG---GCTTGGCTTTTGAATCGGCTTTGCTGTT-GCGAAGTAGGGTGGC------------GGCTTCGGCTGT--------CGAGGG--TCGATCCATTTTG--GGAA-C-TTTG--------TGTGCAC-----TTCG---------GTGCG-CATCTCAA------------------------------
		Phytophthora_megasperma               TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGA-GG--ATATGC-CAGA-TGTGAAGT-GTCTTGCTA---GCGGT---------CTTTCGAGTCTG-----CCG-GTGAGTCCTTTTAAAT--GTACTGAAC--TGTACTCTCTCTTTGCGCGAAAAGCG----TGGC--GTTGCTGGT-TGTGGAGGCTGCC--CGTGTGGCCAGTC--GGCGACCGGTTTGTTAGCTGTGGCGTTT---GGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTA-AACAATCT-GC-----TTATTGGG-TGCTTTTC-CTGTCATGGCGGTA---TGAACTGGTG---AACCGTAGC-TGTGTGGT---GCTTGGCTTTTGAACCGGCTTTGCT-TT-GCGAAGTAGTGTGAC------------GGCTTCGGCTGT--------CGAGGGG-TCGATCCATTTTG--GGAAAC-TTTG--------TGTGTGCG--GCTTCGTGC-----TGCGCG-CATCTCAA------------------------------
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 722 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;