#NEXUS [MacClade 4.08 registered to Kelly Craven, Noble] BEGIN DATA; DIMENSIONS NTAX=84 NCHAR=1267; FORMAT DATATYPE=DNA MISSING=? GAP=- INTERLEAVE ; CHARSTATELABELS 1 tef, 733 tub, ; MATRIX [ 10 20 30 40 50] [ . . . . .] P2C2_typhina GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] P3C1_typhina GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] P4C2_typhina GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] P6_typhina GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] P7_typhina GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] P10C2_typhina GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] P15C2_typhina GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] P2C1_elymi ATTCGATGTATCGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] P3C2_amarillans ATTCGATGTATTGGATAACAGTTGCTAACTTGACTGCTAACAGGGGTACG [50] P4C1_amarillans ATTCGATGTATTGGATAACAGTTGCTAACTTGACTGCTAACAGGGGTACG [50] P5C1_amarillans ATTCGATGTATTGGATAACAGTTGCTAACTTGACTGCTAACAGGGGTACG [50] P9C2_amarillans ATTCGATGTATTGGATAACAGTTGCTAACTTGACTGCTAACAGGGGTACG [50] P10C1_elymi ATTCGATGTATCGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] P12C1_amarillans ATTCGATGTATTGGATAACAGTTGCTAACTTGACTGCTAACAGGGGTACG [50] P15C1_elymi ATTCGATGTATCGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF231231_Epichloe_typhina__Pp GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF231222_Epichloe_typhina__Ao GCTCGATGTATTGGATAACAGCTGCTAACTTGTCTGCCAACAGGGGTACG [50] AF231227_Epichloe_typhina__Php GCTCGATGTATTGGATAACAGCTGCTAACTTGTCTGCCAACAGGGGTACG [50] AF231226_Epichloe_typhina__Php GCTCGATGTATTGGATAACAGCTGCTAACTTGTCTGCCAACAGGGGTACG [50] AF231221_Epichloe_typhina__Lp GCTCGATGTATTGGATAACAGCTGCTAACTTGTCTGCCAACAGGGGTACG [50] AF231223_Epichloe_typhina__Bp GCTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCCAACAGGGGTACG [50] AF231230_Epichloe_typhina__Pn GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF231228_Epichloe_typhina__Ps GCTCGATGTATTGGATAACAGCTGCTAACTTGTCTGCCAACAGGGGTACG [50] HM138506_Neotyphodium_schardlii__Ca GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] HM138507_Neotyphodium_schardlii__Ca GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF231207_Epichloe_clarkii__Hl GCTCGATGTATTGGATAACAGCTGCTAACTTGTCTGCCAACAGGGGTACG [50] AF231218_Epichloe_sylvatica__Bs GCTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCCAACAGGGGTACG [50] AF231201_Epichloe_brachyelytri__Bee ATTCGATGTATTGGAAAACAGTTGCTAACTTGTCTTCTAACAGGGGTACG [50] AF231200_Epichloe_brachyelytri__Bee ATTCGATGTATTGGAAAACAGTTGCTAACTTGTCTTCTAACAGGGGTACG [50] AF231195_Epichloe_baconii__At ATTTGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF231193_Epichloe_baconii__As ATTTGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF231196_Epichloe_baconii__Cv ATTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF457504_Epichloe_amarillans__So ATTCGATGTATTGGATAACAGTTGCTAACTTGTTTGCTAACAGGGGTACG [50] AF457505_Epichloe_amarillans__Ah ATTCGATGTATTGGATAACAGTTGCTAACTTGTTTGCTAACAGGGGTACG [50] AF457506_Epichloe_amarillans__Ap ATTCGATGTAT-GGATAACAGTTGCTAACTTGTTTGCTAACAGGGGTACG [49] AF231213_Epichloe_festucae__Fl ATTCGATGTATTGGATAACAGTTGCTGACTTGTCTGCCAACAGGGGTACG [50] AF231210¬_Epichloe_festucae__Frr ATTCGATGTATTGGATAACAGTTGCTGACTTGTCTGCCAACAGGGGTACG [50] AF457498_E._elymi__Ev ATTCGATGTATCGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF231202_Epichloe_bromicola__Be ATTCGATGTATTGGATAACAGTCGCTAACTTAACTGCTAACAGGGGTACG [50] AF231217_Epichloe_glyceriae__Gs ATTCGATGTATTGGATACCAGTTGCTAACTTGTCTGCTAACAGGGGTGCG [50] AF231216_Epichloe_glyceriae__Gs ATTCGATGTATTGGATACCAGTTGCTAACTTGTCTGCTAACAGGGGTGCG [50] DQ134034_Epichloe_yangzii__Rk ATTCGATGTATTGGATAACAGTCGCTAACTTAACTGCTAACAGGGGTATG [50] DQ134030_Epichloe_yangzii__Rk ATTCGATGTATTGGATAACAGTCGCTAACTTAACTGCTAACAGGGGTATG [50] JQ756452_Epichloe_poae__Psj GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF457509_N_chisosum__Se ATTCGATGTATTGGATAACAGTCGCTAACTTGTCTGCTAACAGGGGTACG [50] AF457508_N_chisosum__Se ATTCGATGTATTGGATAACAGTTGCTAACTTGTTTGCTAACAGGGGTACG [50] AF457510_N_chisosum__Se GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF457541_N_occultans__Lrr ATTCGATGTATTGGATTACAGTTGCTAAGTTGTCTGCTAACAGGGGTACG [50] AF457542_N_occultans__Lrr ATTCGATGTATTGGATAACAGTCGCTAACTTAACTGCTAACAGGGGTACG [50] AY707673_N_tembladerae__Ph GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AY707691_N_tembladerae__Ph ATTCGATGTATTGGATAACAGTTGCTGACTTGTCTGCCAACAGGGGTACG [50] AY707677_N_tembladerae__Bs GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AY707658_N_tembladerae__Bs ATTCGATGTATTGGATAACAGTTGCTGACTTGTCTGCCAACAGGGGTACG [50] FJ190584_N_tembladerae__Ba GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] FJ190576_N_tembladerae__Ba ATTCGATGTATTGGATAACAGTTGCTGACTTGTCTGCCAACAGGGGTACG [50] AY707675_N_tembladerae__Fh GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AY707661_N_tembladerae__Fh ATTCGATGTATTGGATAACAGTTGCTGACTTGTCTGCCAACAGGGGTACG [50] AF457518_Neotyphodium__Evi ATTCGATGTATTGGATAACAGTTGCTAACTTGTTTGCTAACAGGGGTACG [50] AF457517_Neotyphodium__Bp ATTCGATGTATCGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] FJ190572_N_pampeanum__Ba ATTCGATGTATTGGAAAACAGTTGCTGACTTGTCTGCCAACAGGGGTACG [50] FJ190580_N_pampeanum__Ba GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] FJ190570_N_pampeanum__Ba ATTCGATGTATTGGAAAACAGTTGCTGACTTGTCTGCCAACAGGGGTACG [50] FJ190578_N_pampeanum__Ba GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF457513_Neotyphodium_Pau ATTCGATGTATCGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF457514_Neotyphodium_Pau GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF457515_Neotyphodium__Fpa GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF457516_Neotyphodium__Fpa ATTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF532924_Neotyphodiun__Hbo ATTCGATGTATTGGATAACAGTTGCTAACTTGTTTGCTAACAGGGGTACG [50] AF532923_Neotyphodium__Hbo ATTCGATGTATCGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AY163833_Neotyphodium__Hbo TCGCGATGTATTGGATAACAGCTGCTAACTTGTCTGCCAACAGGGGTACG [50] AF457524_Neotyphodium__Hbo ATTCGATGTATTGGATAACAGTCGCTAACTTGTCTGCTAACAGGGGTACG [50] AF457534_Neotyphodium__Sro ATTCGATGTATCGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF457533_Neotyphodium__Sro ATTCGATGTATTGGATAACAGTTGCTGACTTGTCTGCCAACAGGGGTACG [50] AY707683_Neotyphodium__Phc GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AY707672_Neotyphodium__Phc ATTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] JX028260_N_coenophialum__La GTTCGATGTATTGGATAACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] JX028261_N_coenophialum__La ATTCGATGTATTGGATAACAGTTGCTGACTTGTCTGCCAACAGGGGTACG [50] JX028262_N_coenophialum__La ATTCGATGTATTGGATTACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] JX028266_Neotyphodium__Fa2 ATTCGATGTATTGGATAACAGTTGCTGACTTGTCTGCCAACAGGGGTACG [50] JX028267_Neotyphodium__Fa2 ATTCGATGTATTGGATTACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF457529_Neotyphodium_Fa3 GCTCGATGTATTGGATAACAGCTGCTAACTTGTCTGCCAACAGGGGTACG [50] AF457530_Neotyphodium_Fa3 ATTCGATGTATTGGATTACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] AF457532_Neotyphodium_Fa2 ATTCGATGTATTGGATAACAGTTGCTGACTTGTCTGCCAACAGGGGTACG [50] AF457531_Neotyphodium_Fa2 ATTCGATGTATTGGATTACAGTTGCTAACTTGTCTGCTAACAGGGGTACG [50] [ 60 70 80 90 100] [ . . . . .] P2C2_typhina TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAAAAG [99] P3C1_typhina TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] P4C2_typhina TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] P6_typhina TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] P7_typhina TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] P10C2_typhina TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAAAAG [99] P15C2_typhina TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] P2C1_elymi TACTGCGAAATATTCACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [100] P3C2_amarillans TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] P4C1_amarillans TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] P5C1_amarillans TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] P9C2_amarillans TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] P10C1_elymi TACTGCGAAATATTCACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [100] P12C1_amarillans TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] P15C1_elymi TACTGCGAAATATTCACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [100] AF231231_Epichloe_typhina__Pp TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] AF231222_Epichloe_typhina__Ao TACTGCGAAGTAA-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF231227_Epichloe_typhina__Php TACTGCGAAGTAA-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF231226_Epichloe_typhina__Php TACTGCGAAGTAA-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF231221_Epichloe_typhina__Lp TACTGCGAAGTAA-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF231223_Epichloe_typhina__Bp TACTGCGAAGTAA-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF231230_Epichloe_typhina__Pn TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] AF231228_Epichloe_typhina__Ps TACTGCGAAGTAA-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] HM138506_Neotyphodium_schardlii__Ca TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] HM138507_Neotyphodium_schardlii__Ca TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] AF231207_Epichloe_clarkii__Hl TACTGCGAAGTAA-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF231218_Epichloe_sylvatica__Bs TACTGCGAAGTAA-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF231201_Epichloe_brachyelytri__Bee TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF231200_Epichloe_brachyelytri__Bee TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF231195_Epichloe_baconii__At TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF231193_Epichloe_baconii__As TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF231196_Epichloe_baconii__Cv TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF457504_Epichloe_amarillans__So TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF457505_Epichloe_amarillans__Ah TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF457506_Epichloe_amarillans__Ap TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [98] AF231213_Epichloe_festucae__Fl TACTGCAAAATAT-CACTCGCCGCTGCCGAAATTCACGTACTGACTGAAG [99] AF231210¬_Epichloe_festucae__Frr TACTGCAAAATAT-CACTCGCCGCTGCCGAAATTCACGTACTGACTGAAG [99] AF457498_E._elymi__Ev TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTGACGTACTGACTGAAG [99] AF231202_Epichloe_bromicola__Be TACTGCGAAATAT-CACTCGCCGTCGCCGAAATTCACGTACTGACTGAAG [99] AF231217_Epichloe_glyceriae__Gs TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF231216_Epichloe_glyceriae__Gs TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] DQ134034_Epichloe_yangzii__Rk TACTGCGAAATAT-CACTCGCCGTCGCCGAAATTCACGTACTGACTGAAG [99] DQ134030_Epichloe_yangzii__Rk TACTGCGAAATTT-CACTCGCCGTCGCCGAAATTCACGTACTGACTGAAG [99] JQ756452_Epichloe_poae__Psj TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] AF457509_N_chisosum__Se TACTGCGAAATAT-CACTCGCCGTCGCCGAAATTCACGTACTGACTGAAG [99] AF457508_N_chisosum__Se TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF457510_N_chisosum__Se TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] AF457541_N_occultans__Lrr TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF457542_N_occultans__Lrr TACTGCGAAATAT-CACTCGCCGTCGCCGAAATTCACGTACTGACTGAAG [99] AY707673_N_tembladerae__Ph TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] AY707691_N_tembladerae__Ph TACTGCAAAATAT-CACTCGCCGCTGCCGAAATTCACGTACTGACTGAAG [99] AY707677_N_tembladerae__Bs TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] AY707658_N_tembladerae__Bs TACTGCAAAATAT-CACTCGCCGCTGCCGAAATTCACGTACTGACTGAAG [99] FJ190584_N_tembladerae__Ba TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] FJ190576_N_tembladerae__Ba TACTGCAAAATAT-CACTCGCCGCTGCCGAAATTCACGTACTGACTGAAG [99] AY707675_N_tembladerae__Fh TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] AY707661_N_tembladerae__Fh TACTGCAAAATAT-CACTCGCCGCTGCCGAAATTCACGTACTGACTGAAG [99] AF457518_Neotyphodium__Evi TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF457517_Neotyphodium__Bp TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] FJ190572_N_pampeanum__Ba TACTGCAAAATAT-CACTCGCCGCTGCCGAAATTCACGTACTGACTGAAG [99] FJ190580_N_pampeanum__Ba TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] FJ190570_N_pampeanum__Ba TACTGCAAAATAT-CACTCGCCGCTGCCGAAATTCACGTACTGACTGAAG [99] FJ190578_N_pampeanum__Ba TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] AF457513_Neotyphodium_Pau TGCTGCGAAATGT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF457514_Neotyphodium_Pau TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] AF457515_Neotyphodium__Fpa TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] AF457516_Neotyphodium__Fpa TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF532924_Neotyphodiun__Hbo TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF532923_Neotyphodium__Hbo TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTGACGTACTGACTGAAG [99] AY163833_Neotyphodium__Hbo TACTGCGAAGTAA-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF457524_Neotyphodium__Hbo TACTGCGAAATAT-CACTCGCCGTCGCCGAAATTCACGTACTGACTGAAG [99] AF457534_Neotyphodium__Sro TACTGCGAAATAT-CACTCACCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF457533_Neotyphodium__Sro TACTGCAAAATAT-CACTCGCCGCTGCCGAAATTCACGTACTGACTGAAG [99] AY707683_Neotyphodium__Phc TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] AY707672_Neotyphodium__Phc TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] JX028260_N_coenophialum__La TACTGCGAAATAA-CACTCGCCGTTGCCGAAATTCACGTACTGACAGAAG [99] JX028261_N_coenophialum__La TACTGCAAAATAT-CACTCGCCGCTGCCGAAATTCACGTACTGACTGAAG [99] JX028262_N_coenophialum__La TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTACTGACTGGAG [99] JX028266_Neotyphodium__Fa2 TACTGCAAAATAT-CACTCGCCGCTGCCGAAATTCACGTACTGACTGAAG [99] JX028267_Neotyphodium__Fa2 TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTGCTGACTGAAG [99] AF457529_Neotyphodium_Fa3 TACTGCGAAGTAA-CACTCGCCGTTGCCGAAATTCACGTACTGACTGAAG [99] AF457530_Neotyphodium_Fa3 TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTGCTGACTGAAG [99] AF457532_Neotyphodium_Fa2 TACTGCAAAATAT-CACTCGCCGCTGCCGAAATTCACGTACTGACTGAAG [99] AF457531_Neotyphodium_Fa2 TACTGCGAAATAT-CACTCGCCGTTGCCGAAATTCACGTGCTGACTGAAG [99] [ 110 120 130 140 150] [ . . . . .] P2C2_typhina -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] P3C1_typhina -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] P4C2_typhina -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] P6_typhina -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] P7_typhina -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] P10C2_typhina -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] P15C2_typhina -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] P2C1_elymi -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTT [149] P3C2_amarillans -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] P4C1_amarillans -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] P5C1_amarillans -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] P9C2_amarillans -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] P10C1_elymi -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTT [149] P12C1_amarillans -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] P15C1_elymi -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTT [149] AF231231_Epichloe_typhina__Pp -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231222_Epichloe_typhina__Ao -CGCAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231227_Epichloe_typhina__Php -CGCAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231226_Epichloe_typhina__Php -CGCAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231221_Epichloe_typhina__Lp -CGCAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231223_Epichloe_typhina__Bp -CGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231230_Epichloe_typhina__Pn -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231228_Epichloe_typhina__Ps -CGCAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] HM138506_Neotyphodium_schardlii__Ca -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] HM138507_Neotyphodium_schardlii__Ca -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231207_Epichloe_clarkii__Hl -CGCAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231218_Epichloe_sylvatica__Bs -CGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231201_Epichloe_brachyelytri__Bee -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231200_Epichloe_brachyelytri__Bee -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231195_Epichloe_baconii__At -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231193_Epichloe_baconii__As -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231196_Epichloe_baconii__Cv -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457504_Epichloe_amarillans__So -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457505_Epichloe_amarillans__Ah -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457506_Epichloe_amarillans__Ap -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [147] AF231213_Epichloe_festucae__Fl -CGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231210¬_Epichloe_festucae__Frr -CGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457498_E._elymi__Ev -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTT [148] AF231202_Epichloe_bromicola__Be -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTT [148] AF231217_Epichloe_glyceriae__Gs -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF231216_Epichloe_glyceriae__Gs -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] DQ134034_Epichloe_yangzii__Rk -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTT [148] DQ134030_Epichloe_yangzii__Rk -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTT [148] JQ756452_Epichloe_poae__Psj -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457509_N_chisosum__Se -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTT [148] AF457508_N_chisosum__Se -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457510_N_chisosum__Se -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457541_N_occultans__Lrr -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457542_N_occultans__Lrr -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTT [148] AY707673_N_tembladerae__Ph -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AY707691_N_tembladerae__Ph -CGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AY707677_N_tembladerae__Bs -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AY707658_N_tembladerae__Bs -CGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] FJ190584_N_tembladerae__Ba -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] FJ190576_N_tembladerae__Ba -CGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AY707675_N_tembladerae__Fh -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AY707661_N_tembladerae__Fh -CGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457518_Neotyphodium__Evi -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457517_Neotyphodium__Bp -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTT [148] FJ190572_N_pampeanum__Ba -CGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] FJ190580_N_pampeanum__Ba -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] FJ190570_N_pampeanum__Ba -CGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] FJ190578_N_pampeanum__Ba -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457513_Neotyphodium_Pau -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTT [148] AF457514_Neotyphodium_Pau -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457515_Neotyphodium__Fpa -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACTGGTCACTTGATCT [148] AF457516_Neotyphodium__Fpa -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF532924_Neotyphodiun__Hbo -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF532923_Neotyphodium__Hbo -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTT [148] AY163833_Neotyphodium__Hbo -CGCAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457524_Neotyphodium__Hbo -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTT [148] AF457534_Neotyphodium__Sro -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTT [148] AF457533_Neotyphodium__Sro -CGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AY707683_Neotyphodium__Phc -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AY707672_Neotyphodium__Phc TCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [149] JX028260_N_coenophialum__La -TGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] JX028261_N_coenophialum__La -CGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] JX028262_N_coenophialum__La -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] JX028266_Neotyphodium__Fa2 -CGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] JX028267_Neotyphodium__Fa2 -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457529_Neotyphodium_Fa3 -CGCAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457530_Neotyphodium_Fa3 -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457532_Neotyphodium_Fa2 -CGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] AF457531_Neotyphodium_Fa2 -CGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCT [148] [ 160 170 180 190 200] [ . . . . .] P2C2_typhina ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] P3C1_typhina ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] P4C2_typhina ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] P6_typhina ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] P7_typhina ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] P10C2_typhina ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] P15C2_typhina ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] P2C1_elymi ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [199] P3C2_amarillans ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] P4C1_amarillans ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] P5C1_amarillans ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] P9C2_amarillans ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] P10C1_elymi ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [199] P12C1_amarillans ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] P15C1_elymi ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [199] AF231231_Epichloe_typhina__Pp ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF231222_Epichloe_typhina__Ao ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF231227_Epichloe_typhina__Php ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF231226_Epichloe_typhina__Php ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF231221_Epichloe_typhina__Lp ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF231223_Epichloe_typhina__Bp ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF231230_Epichloe_typhina__Pn ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF231228_Epichloe_typhina__Ps ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] HM138506_Neotyphodium_schardlii__Ca ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] HM138507_Neotyphodium_schardlii__Ca ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF231207_Epichloe_clarkii__Hl ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF231218_Epichloe_sylvatica__Bs ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF231201_Epichloe_brachyelytri__Bee ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF231200_Epichloe_brachyelytri__Bee ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF231195_Epichloe_baconii__At ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF231193_Epichloe_baconii__As ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF231196_Epichloe_baconii__Cv ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457504_Epichloe_amarillans__So ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457505_Epichloe_amarillans__Ah ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457506_Epichloe_amarillans__Ap ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [197] AF231213_Epichloe_festucae__Fl ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF231210¬_Epichloe_festucae__Frr ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457498_E._elymi__Ev ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF231202_Epichloe_bromicola__Be ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF231217_Epichloe_glyceriae__Gs ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTTGAGAAGGTA [198] AF231216_Epichloe_glyceriae__Gs ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTTGAGAAGGTA [198] DQ134034_Epichloe_yangzii__Rk ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] DQ134030_Epichloe_yangzii__Rk ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] JQ756452_Epichloe_poae__Psj ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF457509_N_chisosum__Se ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457508_N_chisosum__Se ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457510_N_chisosum__Se ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF457541_N_occultans__Lrr ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457542_N_occultans__Lrr ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AY707673_N_tembladerae__Ph ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AY707691_N_tembladerae__Ph ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AY707677_N_tembladerae__Bs ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AY707658_N_tembladerae__Bs ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] FJ190584_N_tembladerae__Ba ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] FJ190576_N_tembladerae__Ba ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AY707675_N_tembladerae__Fh ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AY707661_N_tembladerae__Fh ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457518_Neotyphodium__Evi ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457517_Neotyphodium__Bp ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] FJ190572_N_pampeanum__Ba ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] FJ190580_N_pampeanum__Ba ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] FJ190570_N_pampeanum__Ba ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] FJ190578_N_pampeanum__Ba ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF457513_Neotyphodium_Pau ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457514_Neotyphodium_Pau ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF457515_Neotyphodium__Fpa ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF457516_Neotyphodium__Fpa ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF532924_Neotyphodiun__Hbo ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF532923_Neotyphodium__Hbo ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AY163833_Neotyphodium__Hbo ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457524_Neotyphodium__Hbo ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457534_Neotyphodium__Sro ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457533_Neotyphodium__Sro ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AY707683_Neotyphodium__Phc ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AY707672_Neotyphodium__Phc ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [199] JX028260_N_coenophialum__La ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] JX028261_N_coenophialum__La ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] JX028262_N_coenophialum__La ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGATA [198] JX028266_Neotyphodium__Fa2 ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] JX028267_Neotyphodium__Fa2 ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457529_Neotyphodium_Fa3 ACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTG [198] AF457530_Neotyphodium_Fa3 ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457532_Neotyphodium_Fa2 ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] AF457531_Neotyphodium_Fa2 ACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTA [198] [ 210 220 230 240 250] [ . . . . .] P2C2_typhina AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] P3C1_typhina AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] P4C2_typhina AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] P6_typhina AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] P7_typhina AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] P10C2_typhina AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] P15C2_typhina AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] P2C1_elymi AGATATTCTTCTTTCACTT-----CACGCATAATATGTCATGTTCACTCG [244] P3C2_amarillans AGATATTCT------ACCCC-T--CACGCATAATATCTGATGTTCACTCG [239] P4C1_amarillans AGATATTCT------ACCCC-T--CACGC------------GTTCACTCG [227] P5C1_amarillans AGATATTCT------ACCCC-T--CACGC------------GTTCACTCG [227] P9C2_amarillans AGATATTCT------ACCCC-T--CACGCATAATATCTGATGTTCACTCG [239] P10C1_elymi AGATATTCTTCTTTCACTT-----CACGCATAATATGTCATGTTCACTCG [244] P12C1_amarillans AGATATTCT------ACCCC-T--CACGC------------GTTCACTCG [227] P15C1_elymi AGATATTCTTCTTTCACTT-----CACGCATAATATGTCATGTTCACTCG [244] AF231231_Epichloe_typhina__Pp AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF231222_Epichloe_typhina__Ao AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF231227_Epichloe_typhina__Php AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF231226_Epichloe_typhina__Php AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF231221_Epichloe_typhina__Lp AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF231223_Epichloe_typhina__Bp AGATATATCTCTTTCACTT-----CACGCATAATATGTGACGTTCAATCG [243] AF231230_Epichloe_typhina__Pn AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF231228_Epichloe_typhina__Ps AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] HM138506_Neotyphodium_schardlii__Ca AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] HM138507_Neotyphodium_schardlii__Ca AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF231207_Epichloe_clarkii__Hl AGATATATCTTTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF231218_Epichloe_sylvatica__Bs AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF231201_Epichloe_brachyelytri__Bee AGATATTCTTCTTTCACTT-----CACGCATAATATGTGATGTTCACTCG [243] AF231200_Epichloe_brachyelytri__Bee AGATATTCTTCTTTCACTT-----CACGCATAATATGTGATGTTCACTCG [243] AF231195_Epichloe_baconii__At AGATATTCT------ACCCC-TCTCACGCATAATATCTGATGTTCACTCG [241] AF231193_Epichloe_baconii__As AGATATTCT------ACCCC-TCTCACGCATAATATCTGATGTTCACTCG [241] AF231196_Epichloe_baconii__Cv AGATATTCT------ACCCC-TCTCACGCATAATATCTGATGTTCACTCG [241] AF457504_Epichloe_amarillans__So ATATATTCT------ACTCC-TCTCACGCATAATATCTGATGTTCACTCG [241] AF457505_Epichloe_amarillans__Ah ATATATTCT------ACTCC-TCTCACGCATAATATCTGATGTTCACTCG [241] AF457506_Epichloe_amarillans__Ap ATATATTCT------ACTCC-TCTCACGCATAATATCTGATGTTCACTCG [240] AF231213_Epichloe_festucae__Fl AGATATT-TT-----ACCCC-TCTCACGCATAATATCCGATGTTCACTCG [241] AF231210¬_Epichloe_festucae__Frr AGATATT-TT-----ACCCC-TCTCACGCATAATATCCGATGTTCACTCG [241] AF457498_E._elymi__Ev AGATATTCTTCTTTCACTT-----CACGCATAATATGTGATGTTCACTCG [243] AF231202_Epichloe_bromicola__Be AGACATTCTTCTTTCACTT-----CACGCATAATATGTGATGTTCACTCG [243] AF231217_Epichloe_glyceriae__Gs AGATACTCTTCTTTCACGT-----CGCGCATAATATGTGATGTTCAGTCG [243] AF231216_Epichloe_glyceriae__Gs AGATACTCTTCTTTCACGT-----CGCGCATAATATGTGATGTTCACTCG [243] DQ134034_Epichloe_yangzii__Rk AGACATTCTTCTCTCACTT-----CACGCATAATATGTGATGTTCACTCG [243] DQ134030_Epichloe_yangzii__Rk AGACATTCTTCTTTCACTT-----CACGCATAATATGTGATGTTCACTCG [243] JQ756452_Epichloe_poae__Psj AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF457509_N_chisosum__Se AGACATTCTTCTTTCACTT-----CACGCATAATATGTGATGTTCACTCG [243] AF457508_N_chisosum__Se ATATATTCT------ACCCC-TCTCACGCATAATATCTGATGTTCACTCG [241] AF457510_N_chisosum__Se AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF457541_N_occultans__Lrr AGATATTCT------ACCCC-T--CACGCATAATATCTGATGTTCACTCG [239] AF457542_N_occultans__Lrr AGACGTTCTTCTTTCACTT-----CACGCATAATATGTGATGTTCACTCG [243] AY707673_N_tembladerae__Ph AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AY707691_N_tembladerae__Ph AGATATT-TT-----ACCCC-TCTCACGCATAATATCCGATGTTCACTCG [241] AY707677_N_tembladerae__Bs AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AY707658_N_tembladerae__Bs AGATATT-TT-----ACCCC-TCTCACGCATAATATCCGATGTTCACTCG [241] FJ190584_N_tembladerae__Ba AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] FJ190576_N_tembladerae__Ba AGATATT-TT-----ACCCC-TCTCACGCATAATATCCGATGTTCACTCG [241] AY707675_N_tembladerae__Fh AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AY707661_N_tembladerae__Fh AGATATT-TT-----ACCCC-TCTCACGCATAATATCCGATGTTCACTCG [241] AF457518_Neotyphodium__Evi ATATATTCT------ACTCC-TCTCACGCATAATATCTGATGTTCACTCG [241] AF457517_Neotyphodium__Bp AGATATTCCTCTTTCACTT-----CGAGCATAATATGTGATGTTCACTCG [243] FJ190572_N_pampeanum__Ba AGATATT-TT-----ACCCC-TCTCACGCATAATATCCGATGTTCACTCG [241] FJ190580_N_pampeanum__Ba AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] FJ190570_N_pampeanum__Ba AGATATT-TT-----ACCCC-TCTCACGCATAATATCCGATGTTCACTCG [241] FJ190578_N_pampeanum__Ba AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF457513_Neotyphodium_Pau AGATATTCTTCTTTCACTT-----CACGCATAATATGTGATGTTCACTCG [243] AF457514_Neotyphodium_Pau AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF457515_Neotyphodium__Fpa AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF457516_Neotyphodium__Fpa AGATATTCT------ACCCCCTCTCACGCATAATATCTGATGTTCACTCG [242] AF532924_Neotyphodiun__Hbo ATATATTCT------ACTCC-TCTCACGCATAATATCTGATGTTCACTCG [241] AF532923_Neotyphodium__Hbo AGATATTCTTCTTTCACTT-----CACGCATAATATGTGATGTTCACTCG [243] AY163833_Neotyphodium__Hbo AGATATATCTCTTTCACTC-----CACGCACAACATGTGACGTTCAGTCG [243] AF457524_Neotyphodium__Hbo AGACATTCTTCTTTCAATT-----CACGCATAATATGTGATGTTCACTCG [243] AF457534_Neotyphodium__Sro AGATATTCTTCTTTCACTT-----CACGCATAATATGTGATGTTCACTCG [243] AF457533_Neotyphodium__Sro AGATATT-TT-----ACCCC-TCTCACGCATAATATCCGATGTTCACTCG [241] AY707683_Neotyphodium__Phc AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AY707672_Neotyphodium__Phc AGATATTCT------ACCCC-T--CACGCATAATATCTGATGTTCACTCG [240] JX028260_N_coenophialum__La AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] JX028261_N_coenophialum__La AGATATT-TT-----ACCCC-TCTCACGCATGATATCCGATGTTCACTCG [241] JX028262_N_coenophialum__La AGATATTCT------ACCCC-TCTCACGCATAATATCTGATGTTCACTCG [241] JX028266_Neotyphodium__Fa2 AGATATT-TT-----ACCCC-TCTCACGCATAATATCCGATGTTCACTCG [241] JX028267_Neotyphodium__Fa2 AGATAATCTT------CCCC-TCTCACGCATAATATCTGATGTTCACTCG [241] AF457529_Neotyphodium_Fa3 AGATATATCTCTTTCACTC-----CACGCATAATATGTGACGTTCAGTCG [243] AF457530_Neotyphodium_Fa3 AGATAATCTT------CCCC-TCTCACGCATAATATCTGATGTTCACTCG [241] AF457532_Neotyphodium_Fa2 AGATATT-TT-----ACCCC-TCTCACGCATAATATCCGATGTTCACTCG [241] AF457531_Neotyphodium_Fa2 AGATAATCTT------CCCC-TCTCACGCATAATATCTGATGTTCACTCG [241] [ 260 270 280 290 300] [ . . . . .] P2C2_typhina TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] P3C1_typhina TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] P4C2_typhina TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] P6_typhina TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] P7_typhina TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] P10C2_typhina TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] P15C2_typhina TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] P2C1_elymi TTGCAATGCGAGCCTGCCTTGTGTGTCGCCTTGTAACCT---TGG-TGGG [290] P3C2_amarillans TTGCAATGCGAACCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [285] P4C1_amarillans TTGCAATGCGAACCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [273] P5C1_amarillans TTGCAATGCGAACCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [273] P9C2_amarillans TTGCAATGCGAACCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [285] P10C1_elymi TTGCAATGCGAGCCTGCCTTGTGTGTCGCCTTGTAACCT---TGG-TGGG [290] P12C1_amarillans TTGCAATGCGAACCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [273] P15C1_elymi TTGCAATGCGAGCCTGCCTTGTGTGTCGCCTTGTAACCT---TGG-TGGG [290] AF231231_Epichloe_typhina__Pp TTGCAATGTGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF231222_Epichloe_typhina__Ao TTGCAATGTGAGCCTGCCTTGCGTGTCGCTTTGCAACCTCAA-GG-TGGG [291] AF231227_Epichloe_typhina__Php TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCTCAA-GG-TGGG [291] AF231226_Epichloe_typhina__Php TTGCAACGCGAGCCTGCCTTGCGTGTCGCTTTGCAACTTCAA-GG-TGGG [291] AF231221_Epichloe_typhina__Lp TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCTCAA-GG-TGGG [291] AF231223_Epichloe_typhina__Bp TTGCAATGTGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF231230_Epichloe_typhina__Pn TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF231228_Epichloe_typhina__Ps TTGCAACGCGAGCCTGCCTTGCGTGTCGCTTTGCAACTTCAA-GG-TGGG [291] HM138506_Neotyphodium_schardlii__Ca TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] HM138507_Neotyphodium_schardlii__Ca TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF231207_Epichloe_clarkii__Hl TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCTCAA-GG-TGGG [291] AF231218_Epichloe_sylvatica__Bs TTGCAATGTGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF231201_Epichloe_brachyelytri__Bee TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF231200_Epichloe_brachyelytri__Bee TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF231195_Epichloe_baconii__At TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AF231193_Epichloe_baconii__As TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AF231196_Epichloe_baconii__Cv TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AF457504_Epichloe_amarillans__So TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGGGTGGG [288] AF457505_Epichloe_amarillans__Ah TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AF457506_Epichloe_amarillans__Ap TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [286] AF231213_Epichloe_festucae__Fl CTGCATTGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AF231210¬_Epichloe_festucae__Frr CTGCATTGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AF457498_E._elymi__Ev TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF231202_Epichloe_bromicola__Be TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF231217_Epichloe_glyceriae__Gs TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF231216_Epichloe_glyceriae__Gs TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] DQ134034_Epichloe_yangzii__Rk TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] DQ134030_Epichloe_yangzii__Rk TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] JQ756452_Epichloe_poae__Psj TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF457509_N_chisosum__Se TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF457508_N_chisosum__Se TTGCAATGCGAGCCTGCTTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AF457510_N_chisosum__Se TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF457541_N_occultans__Lrr TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [285] AF457542_N_occultans__Lrr TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] AY707673_N_tembladerae__Ph TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] AY707691_N_tembladerae__Ph CTGCATTGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AY707677_N_tembladerae__Bs TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] AY707658_N_tembladerae__Bs CTGCATTGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] FJ190584_N_tembladerae__Ba TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] FJ190576_N_tembladerae__Ba CTGCATTGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AY707675_N_tembladerae__Fh TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] AY707661_N_tembladerae__Fh CTGCATTGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AF457518_Neotyphodium__Evi TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AF457517_Neotyphodium__Bp TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] FJ190572_N_pampeanum__Ba CTGCATTGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] FJ190580_N_pampeanum__Ba TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] FJ190570_N_pampeanum__Ba CTGCATTGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] FJ190578_N_pampeanum__Ba TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF457513_Neotyphodium_Pau TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF457514_Neotyphodium_Pau TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF457515_Neotyphodium__Fpa TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF457516_Neotyphodium__Fpa TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [288] AF532924_Neotyphodiun__Hbo TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AF532923_Neotyphodium__Hbo TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] AY163833_Neotyphodium__Hbo TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCCTACTCAATGG-TGGG [292] AF457524_Neotyphodium__Hbo TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF457534_Neotyphodium__Sro TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [289] AF457533_Neotyphodium__Sro CTGCATTGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AY707683_Neotyphodium__Phc TTGCAATGCGAGCCTGCCTTGGGTGTCGCTTTGCAACCT---TGG-TGGG [289] AY707672_Neotyphodium__Phc TTGCAATGCGAACCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [286] JX028260_N_coenophialum__La TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCT---TGG-TGGG [289] JX028261_N_coenophialum__La CTGCATTGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] JX028262_N_coenophialum__La TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] JX028266_Neotyphodium__Fa2 CTGCATTGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] JX028267_Neotyphodium__Fa2 TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AF457529_Neotyphodium_Fa3 TTGCAATGCGAGCCTGCCTTGCGTGTCGCTTTGCAACCTCAATGG-TGGG [292] AF457530_Neotyphodium_Fa3 TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] AF457532_Neotyphodium_Fa2 CTGCATTGCGAGCCTGCCTTGTGTGTCGCTTTGCAGCCT---TGG-TGGG [287] AF457531_Neotyphodium_Fa2 TTGCAATGCGAGCCTGCCTTGTGTGTCGCTTTGCAACCT---TGG-TGGG [287] [ 310 320 330 340 350] [ . . . . .] P2C2_typhina CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] P3C1_typhina CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] P4C2_typhina CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] P6_typhina CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] P7_typhina CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] P10C2_typhina CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] P15C2_typhina CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] P2C1_elymi CAAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [318] P3C2_amarillans CAAGCAAACGA----CTT--GCCC--------------CTCTTTTTCGCC [315] P4C1_amarillans CAAGCAAACGA----CTT--GCCC--------------CTCTTTTTCGCC [303] P5C1_amarillans CAAGCAAACGA----CTT--GCCC--------------CTCTTTTTCGCC [303] P9C2_amarillans CAAGCAAACGA----CTT--GCCC--------------CTCTTTTTCGCC [315] P10C1_elymi CAAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [318] P12C1_amarillans CAAGCAAACGA----CTT--GCCC--------------CTCTTTTTCGCC [303] P15C1_elymi CAAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [318] AF231231_Epichloe_typhina__Pp CAAGCAAGCGA----CT---GCTC--------------CTC-TTTTCGCC [317] AF231222_Epichloe_typhina__Ao CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [319] AF231227_Epichloe_typhina__Php CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [319] AF231226_Epichloe_typhina__Php CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [319] AF231221_Epichloe_typhina__Lp CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [319] AF231223_Epichloe_typhina__Bp CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGAC [317] AF231230_Epichloe_typhina__Pn CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] AF231228_Epichloe_typhina__Ps CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [319] HM138506_Neotyphodium_schardlii__Ca CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] HM138507_Neotyphodium_schardlii__Ca CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] AF231207_Epichloe_clarkii__Hl CAAGCAAGCGA----CT---GCCC--------------CTC-TCTTCGCC [319] AF231218_Epichloe_sylvatica__Bs CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] AF231201_Epichloe_brachyelytri__Bee CAAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [317] AF231200_Epichloe_brachyelytri__Bee CAAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [317] AF231195_Epichloe_baconii__At CAAGCAAGCGA----CTTTTGCCC--------------CTC-TTTTCGCC [318] AF231193_Epichloe_baconii__As CAAGCAAGCGA----CTTT-GCCC--------------CTC-TTTTCGCC [317] AF231196_Epichloe_baconii__Cv CAAGCAAGCGA----CTT--GCCC--------------CTCTTTTTCGCC [317] AF457504_Epichloe_amarillans__So CAAGCAAGCGA----CTT--GCCCGCCCACCAAAGCCCCTCTTTTTCGCC [332] AF457505_Epichloe_amarillans__Ah CAAGCAAGCGA----CTT--GCCCGCCCACCAAAGCCCCTCTTTTTCGCC [331] AF457506_Epichloe_amarillans__Ap CAAGCAAGCGA----CTT--GCCCGCCCACCAAAGCCCCTCTTTTTCGCC [330] AF231213_Epichloe_festucae__Fl CAAGCAAGCGA----CTT--GCCC--------------CTC-TTTTCGCC [316] AF231210¬_Epichloe_festucae__Frr CAAGCAAGCGA----CTT--GCCC--------------CTC-TTTTCGCC [316] AF457498_E._elymi__Ev CAAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [317] AF231202_Epichloe_bromicola__Be CGAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [317] AF231217_Epichloe_glyceriae__Gs CAAGCAAGCAAGCAACT---GCCC--------------CTC-TTTTCGCC [321] AF231216_Epichloe_glyceriae__Gs CAAGCAAGCAAGCAACT---GCCC--------------CTC-TTTTCGCC [321] DQ134034_Epichloe_yangzii__Rk CGAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [317] DQ134030_Epichloe_yangzii__Rk CGAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [317] JQ756452_Epichloe_poae__Psj CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] AF457509_N_chisosum__Se CGAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [317] AF457508_N_chisosum__Se CAAGTAAGCGA----CTT--GCCCGCCCACCAAAGCCCCTCTTTTTCGCC [331] AF457510_N_chisosum__Se CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] AF457541_N_occultans__Lrr CAAGCAAGCGA----CTTT-GCCC--------------CTC-TTTTCGCC [315] AF457542_N_occultans__Lrr CGAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [317] AY707673_N_tembladerae__Ph CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] AY707691_N_tembladerae__Ph CAAGCAAGCGA----CTT--GCCC--------------CTC-TTTTCGCC [316] AY707677_N_tembladerae__Bs CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] AY707658_N_tembladerae__Bs CAAGCAAGCGA----CTT--GCCC--------------CTC-TTTTCGCC [316] FJ190584_N_tembladerae__Ba CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] FJ190576_N_tembladerae__Ba CAAGCAAGCGA----CTT--GCCC--------------CTC-TTTTCGCC [316] AY707675_N_tembladerae__Fh CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] AY707661_N_tembladerae__Fh CAAGCAAGCGA----CTT--GCCC--------------CTC-TTTTCGCC [316] AF457518_Neotyphodium__Evi CAAGCAAGCGA----CTT--GCCCGCCCACCAAAGCCCCTCTTTTTCGCC [331] AF457517_Neotyphodium__Bp CAAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [317] FJ190572_N_pampeanum__Ba CAAGCAAGCGA----CTT--GCCC--------------CTC-TTTTCGCC [316] FJ190580_N_pampeanum__Ba CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] FJ190570_N_pampeanum__Ba CAAGCAAGCGA----CTT--GCCC--------------CTC-TTTTCGCC [316] FJ190578_N_pampeanum__Ba CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] AF457513_Neotyphodium_Pau CAAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [317] AF457514_Neotyphodium_Pau CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] AF457515_Neotyphodium__Fpa CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] AF457516_Neotyphodium__Fpa CAAGCAAGCGA----CTT--GCCCGCCCACCAATGCCCCTCTTTTTCGCC [332] AF532924_Neotyphodiun__Hbo CAAGCAAGCGA----CTT--GCCCGCCCACCAAAGCCCCTCTTTTTCGCC [331] AF532923_Neotyphodium__Hbo CAAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [317] AY163833_Neotyphodium__Hbo CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [320] AF457524_Neotyphodium__Hbo CGAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [317] AF457534_Neotyphodium__Sro CAAGCAAGCAT----CT---GCCC--------------CTC-TTTTCGCC [317] AF457533_Neotyphodium__Sro CAAGCAAGCGA----CTT--GCCC--------------CTC-TTTTCGCC [316] AY707683_Neotyphodium__Phc CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] AY707672_Neotyphodium__Phc CAAGCAAACGA----CTT--GCCC--------------CTCTTTTTCGCC [316] JX028260_N_coenophialum__La CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [317] JX028261_N_coenophialum__La CAAGCAAGCGA----CTT--GCCC--------------CTC-TTTTCGCC [316] JX028262_N_coenophialum__La CAAGCAAGCGA----CTTT-GCCC--------------CTC-TTTTCGCC [317] JX028266_Neotyphodium__Fa2 CAAGCAAGCGA----CTT--GCCC--------------CTC-TTTTCGCC [316] JX028267_Neotyphodium__Fa2 CAAGCAAGCGA----CTTT-GCCC--------------CTC-TTTTCGCC [317] AF457529_Neotyphodium_Fa3 CAAGCAAGCGA----CT---GCCC--------------CTC-TTTTCGCC [320] AF457530_Neotyphodium_Fa3 CAAGCAAGCGA----CTTT-GCCC--------------CTC-TTTTCGCC [317] AF457532_Neotyphodium_Fa2 CAAGCAAGCGA----CTT--GCCC--------------CTC-TTTTCGCC [316] AF457531_Neotyphodium_Fa2 CAAGCAAGCGA----CTTT-GCCC--------------CTC-TTTTCGCC [317] [ 360 370 380 390 400] [ . . . . .] P2C2_typhina CGCGATA-CGAA----TTTTTTTTTTTTTTT--CGGTCGCGGGGCTCAGT [360] P3C1_typhina CGCGATA-CGAA----TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [357] P4C2_typhina CGCGATA-CGAA----TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [357] P6_typhina CGCGATA-CGA-----TTTTTTTTTTTTTTTT-CGGTCGCGGGGCTCAGT [360] P7_typhina CGCGATA-CGA-----TTTTTTTTTTTTTTTT-CGGTCGCGGGGCTCAGT [360] P10C2_typhina CGCGATA-CGAA----TTTTTTTTTTTTTTT--CGGTCGCGGGGCTCAGT [360] P15C2_typhina CGCGATA-CGAAA---TTTTTTTTTTTTTT---CGGTCGCGGGGCTCAGT [360] P2C1_elymi CGCGATA-CGAA----TTTTTTT-CTT------CGGTCGCGGGGCTCAGT [356] P3C2_amarillans CGCGATA-CGAA----TTTTTTTTTT-------CGGTCGCGGGGCTCAGT [353] P4C1_amarillans CGCGATA-CGAA----TTTTTTTTTT-------CGGTCGCGGGGCTCAGT [341] P5C1_amarillans CGCGATA-CGAA----TTTTTTTTTT-------CGGTCGCGGGGCTCAGT [341] P9C2_amarillans CGCGATA-CGAA----TTTTTTTTTT-------CGGTCGCGGGGCTCAGT [353] P10C1_elymi CGCGATA-CGAA----TTTTTTT-CTT------CGGTCGCGGGGCTCAGT [356] P12C1_amarillans CGCGATA-CGAA----TTTTTTTTTT-------CGGTCGCGGGGCTCAGT [341] P15C1_elymi CGCGATA-CGAA----TTTTTTTTCTT------CGGTCGCGGGGCTCAGT [357] AF231231_Epichloe_typhina__Pp CGCGATA-CGAG----TTTTTTTTTTTTTTT--CGGTCGCGGGGCTCAGT [360] AF231222_Epichloe_typhina__Ao CGCGATA-CGAA----TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [359] AF231227_Epichloe_typhina__Php CGCGATA-CGA-----TTTTTTTTTTTTTT---CGGTCGCGGGGCTCAGT [360] AF231226_Epichloe_typhina__Php CGCGATA-CGAA----TTTTTTTTTTTTTTTT--GGTCGCGGGGCTCAGT [362] AF231221_Epichloe_typhina__Lp CGCGATA-CGA-----TTTTTTTTTTTTTTT--CGGTCGCGGGGCTCAGT [361] AF231223_Epichloe_typhina__Bp CGCGATA-CGAA----TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [357] AF231230_Epichloe_typhina__Pn CGCGATA-CGAAA---TTTTTTTTTTT------CGGTCGCGGGGCTCAGT [357] AF231228_Epichloe_typhina__Ps CGCGATA-CGAA----TTTTTTTTTTTTTTTT--GGTCGCGGGGCTCAGT [362] HM138506_Neotyphodium_schardlii__Ca CGCGATA-CGAGG---TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [358] HM138507_Neotyphodium_schardlii__Ca CGCGATA-CGAA----TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [357] AF231207_Epichloe_clarkii__Hl CGCGATA-CGAA----TTTTTTTTTTT------CGGTCGCGGGGCTCAGT [358] AF231218_Epichloe_sylvatica__Bs CGCGATA-CGAAA---TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [359] AF231201_Epichloe_brachyelytri__Bee CGCGATA-CGAA----TTTTTTTTTTT------CGGTCGCGGGGCTCAGT [356] AF231200_Epichloe_brachyelytri__Bee CGCGATA-CGAA----TTTTTTTTTTT------CGGTCGCGGGGCTCAGT [356] AF231195_Epichloe_baconii__At CGCGATA-CGAA----TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [359] AF231193_Epichloe_baconii__As CGCGATA-CGAA----TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [358] AF231196_Epichloe_baconii__Cv CGCGATA-CGAAA---TTTTTTTTT--------CGGTCGCGGGGCTCAGT [355] AF457504_Epichloe_amarillans__So CGCGATAACGAA----TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [373] AF457505_Epichloe_amarillans__Ah CGCGATA-CTAA----TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [372] AF457506_Epichloe_amarillans__Ap CGCGATA-CGAA----TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [370] AF231213_Epichloe_festucae__Fl CGCGATA-CGAA----TTTTTTTTTTTTTTT--CGGTCGCGGGGCTCAGT [359] AF231210¬_Epichloe_festucae__Frr CGCGATA-CGAA----TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [357] AF457498_E._elymi__Ev CGCGATA-CGAA----TTTTTTTTTTTTTTTT-CGGTCGCGGGGCTCAGT [361] AF231202_Epichloe_bromicola__Be CGCGATA-CGAAC---TTTTTTTTTTTTTT---CGGTCGCGGGGCTCAGT [360] AF231217_Epichloe_glyceriae__Gs CGCGATT-CGAA----TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [362] AF231216_Epichloe_glyceriae__Gs CGCGATT-CGAA----TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [362] DQ134034_Epichloe_yangzii__Rk CGCGATA-CGAAC---TTTTTTTTCTTT-----CGGTCGCGGGGCTCAGT [358] DQ134030_Epichloe_yangzii__Rk CGCGATA-CGAAC---TTTTTTTTTTTTTTT--CGGCCGCGGGGCTCAGT [361] JQ756452_Epichloe_poae__Psj CGCGATA-CGAAA---TTTTTTTTTTTTTTT--CGGTCGCGGGGCTCAGT [361] AF457509_N_chisosum__Se CGCGATA-CGAATA--TTTTTTTTT--------CGGTCGCGGGGCTCAGT [356] AF457508_N_chisosum__Se CGCGATA-CGAAA---TTTTTTTTTT-------CGGTCGCGGGGCTCAGT [370] AF457510_N_chisosum__Se CGCGATA-CGAG----TTTTTTTTTTTTTTTTTCGGTCGCGGGGCTCAGT [362] AF457541_N_occultans__Lrr CGCGATA-CGAAA---TTTTTTTTT--------CGGTCGCGGGGCTCAGT [353] AF457542_N_occultans__Lrr CGCGATA-CGAAC---TTTTTTTTTTT------CGGTCGCGGGGCTCAGT [357] AY707673_N_tembladerae__Ph CGCGATA-CGAAA---TTTTTTTTTTTTTTT--CGGTCGCGGGGCTCAGT [361] AY707691_N_tembladerae__Ph CGCGATA-CGAA----TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [357] AY707677_N_tembladerae__Bs CGCGATA-CGAAA---TTTTTTTTTTTTTT---CGGTCGCGGGGCTCAGT [360] AY707658_N_tembladerae__Bs CGCGATA-CGAA----TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [357] FJ190584_N_tembladerae__Ba CGCGATA-CGAAA---TTTTTTTTTTTTTTT--CGGTCGCGGGGCTCAGT [361] FJ190576_N_tembladerae__Ba CGCGATA-CGAA----TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [357] AY707675_N_tembladerae__Fh CGCGATA-CGAAA---TTTTTTTTTTTTTTT--CGGTCGCGGGGCTCAGT [361] AY707661_N_tembladerae__Fh CGCGATA-CGAA----TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [357] AF457518_Neotyphodium__Evi CGCGATA-CGAA----TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [371] AF457517_Neotyphodium__Bp CGCGATA-CGAA----TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [357] FJ190572_N_pampeanum__Ba CGCGATA-CGAA----TTTTTTTTTT-------CGGTCGCGGGGCTCAGT [354] FJ190580_N_pampeanum__Ba CGCGATA-CGAAAAAATTTTTTTTTTT------CTGTCGCGGGGCTCAGT [360] FJ190570_N_pampeanum__Ba CGCGATA-CGAA----TTTTTTTTTT-------CGGTCGCGGGGCTCAGT [354] FJ190578_N_pampeanum__Ba CGCGATA-CGAAAAAATTTTTTTTTTT------CTGTCGCGGGGCTCAGT [360] AF457513_Neotyphodium_Pau CGCGATA-CGAA----TTTTTTTTTTT------CGGTCGCGGGGCTCAGT [356] AF457514_Neotyphodium_Pau CGCGATA-CGAAA---TTTTTTTTTTTT-----AGGTCGCGGGGCTCAGT [358] AF457515_Neotyphodium__Fpa CGCGATA-CGAAA---TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [359] AF457516_Neotyphodium__Fpa CGCGATA-CGAAA---TTTTTTTTTT-------CGGTCGCGGGGCTCAGT [371] AF532924_Neotyphodiun__Hbo CGCGATA-CGAA----TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [371] AF532923_Neotyphodium__Hbo CGCGATA-CGAA----TTTTTTTTTTTTTTT--CGGTCGCGGGGCTCAGT [360] AY163833_Neotyphodium__Hbo CGCGATA-CGAAA---TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [361] AF457524_Neotyphodium__Hbo CGCGATA-CGAA----TTTTTTTTT-TT-----CGGTCGCGGGGCTCAGT [356] AF457534_Neotyphodium__Sro CGCGACA-CGAA----TTTTTTTTTTTTTTT--CGGTCGCGGGGCTCAGT [360] AF457533_Neotyphodium__Sro CGCGATA-CGAA----TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [357] AY707683_Neotyphodium__Phc CGCGATA-CGAA----TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [357] AY707672_Neotyphodium__Phc CGCGATA-CGAA----TTTTTTTTTT-------CGGTCGCGGGGCTCAGT [354] JX028260_N_coenophialum__La CGCGATA-CGAATA--TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [360] JX028261_N_coenophialum__La CGCGATA-CGAA----TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [356] JX028262_N_coenophialum__La CGCGATA-CGAA----TTTTTTTTTTTT-----CGGTCGCGGGGCTCAGT [357] JX028266_Neotyphodium__Fa2 CGCGATA-CGAA----TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [357] JX028267_Neotyphodium__Fa2 CGCGATA-CGAAA---TTTTTTTTTT-------CGGTCGCGGGGCTCAG- [355] AF457529_Neotyphodium_Fa3 CGCGATA-CGAA----TTTTTTTTTTTTT----CGGTCGCGGGGCTCAGT [361] AF457530_Neotyphodium_Fa3 CGCGATA-CGAAA---TTTTTTTTTT-------CGGTCGCGGGGCTCAG- [355] AF457532_Neotyphodium_Fa2 CGCGATA-CGAA----TTTTTTTTTTT------CGGTCGCGGGGCTCAGT [355] AF457531_Neotyphodium_Fa2 CGCGATA-CGAA----TTTTTTTTTTT------CGGTCGCGGGGCTCAG- [355] [ 410 420 430 440 450] [ . . . . .] P2C2_typhina CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [404] P3C1_typhina CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTTACT-GGTCT-GTGC [401] P4C2_typhina CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTTACT-GGTCT-GTGC [401] P6_typhina CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [404] P7_typhina CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [404] P10C2_typhina CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [404] P15C2_typhina CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [404] P2C1_elymi CTGACTTTTGGTGGGG-CACCTCTCTACC---CGTCACT-GGTCT-AAGC [400] P3C2_amarillans CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [398] P4C1_amarillans CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [386] P5C1_amarillans CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [386] P9C2_amarillans CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [398] P10C1_elymi CTGACTTTTGGTGGGG-CACCTCTCTACC---CGTCACT-GGTCT-AAGC [400] P12C1_amarillans CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [386] P15C1_elymi CTGACTTTTGGTGGGG-CACCTCTCTACC---CGTCACT-GGTCT-AAGC [401] AF231231_Epichloe_typhina__Pp CTGACTTTTGGTGGGG-CATCTCTCAACC---CGTCACT-GGTCT-GTGC [404] AF231222_Epichloe_typhina__Ao CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [403] AF231227_Epichloe_typhina__Php CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [404] AF231226_Epichloe_typhina__Php CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [406] AF231221_Epichloe_typhina__Lp TTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [405] AF231223_Epichloe_typhina__Bp CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [401] AF231230_Epichloe_typhina__Pn CTGACTTTTGGTGGGG-CACCTCTTAACC---CGTCACT-GGTCT-GTGC [401] AF231228_Epichloe_typhina__Ps CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [406] HM138506_Neotyphodium_schardlii__Ca CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [402] HM138507_Neotyphodium_schardlii__Ca CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTTACT-GGTCT-GTGC [401] AF231207_Epichloe_clarkii__Hl CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [402] AF231218_Epichloe_sylvatica__Bs CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [403] AF231201_Epichloe_brachyelytri__Bee CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACTTGGTCT-GAGC [401] AF231200_Epichloe_brachyelytri__Bee CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACTTGGTCT-GAGC [401] AF231195_Epichloe_baconii__At CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [404] AF231193_Epichloe_baconii__As CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [403] AF231196_Epichloe_baconii__Cv CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-AAGC [399] AF457504_Epichloe_amarillans__So CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [418] AF457505_Epichloe_amarillans__Ah CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [417] AF457506_Epichloe_amarillans__Ap CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGGGC [415] AF231213_Epichloe_festucae__Fl ATGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [404] AF231210¬_Epichloe_festucae__Frr ATGACTTTTGGTGGGG-CACCT-TCAACC---CGTCACT-GGTCTTGAGC [401] AF457498_E._elymi__Ev CTGACTTTTGGTGGGG-CACCTCTCTACC---CGTCACT-GGTCT-AAGC [405] AF231202_Epichloe_bromicola__Be CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-AAGC [404] AF231217_Epichloe_glyceriae__Gs CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GTTAT-GAGC [406] AF231216_Epichloe_glyceriae__Gs CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GTTAT-GAGC [406] DQ134034_Epichloe_yangzii__Rk CTGACTTTTGGTGGGGGCACCTCTCAACC---CGTCACT-GGTCT-AAGC [403] DQ134030_Epichloe_yangzii__Rk CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-AAGC [405] JQ756452_Epichloe_poae__Psj CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [405] AF457509_N_chisosum__Se CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-AAGC [400] AF457508_N_chisosum__Se CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [415] AF457510_N_chisosum__Se CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [406] AF457541_N_occultans__Lrr CTGACTCTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [398] AF457542_N_occultans__Lrr CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-AAGC [401] AY707673_N_tembladerae__Ph CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [405] AY707691_N_tembladerae__Ph ATGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [402] AY707677_N_tembladerae__Bs CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [404] AY707658_N_tembladerae__Bs ATGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [402] FJ190584_N_tembladerae__Ba CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [405] FJ190576_N_tembladerae__Ba ATGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [402] AY707675_N_tembladerae__Fh CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [405] AY707661_N_tembladerae__Fh ATGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [402] AF457518_Neotyphodium__Evi CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGGGC [416] AF457517_Neotyphodium__Bp CTGACTTTTGGTGGGG-CACCTCTCTACC---CGTCACT-GGTCT-AAGC [401] FJ190572_N_pampeanum__Ba ATGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [399] FJ190580_N_pampeanum__Ba CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [404] FJ190570_N_pampeanum__Ba ATGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [399] FJ190578_N_pampeanum__Ba CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [404] AF457513_Neotyphodium_Pau CTGACTTTTGGTGGGG-CACCTCTCTACC---CGTCACT-GGTCT-AAGC [400] AF457514_Neotyphodium_Pau CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [402] AF457515_Neotyphodium__Fpa CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [403] AF457516_Neotyphodium__Fpa CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [416] AF532924_Neotyphodiun__Hbo CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGGGC [416] AF532923_Neotyphodium__Hbo CTGACTTTTGGTGGGG-CACCTCTCTACC---CGTCACT-GGTCT-AAGC [404] AY163833_Neotyphodium__Hbo CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [405] AF457524_Neotyphodium__Hbo CTGACTTTTGGTGGGG-CTCCTCTCAACC---CGTCACT-GGTCT-AAGC [400] AF457534_Neotyphodium__Sro CTGACTTTTGGTGGGG-CACCTCTCTACC---CGTCACT-GGTCT-AAGC [404] AF457533_Neotyphodium__Sro ATGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [402] AY707683_Neotyphodium__Phc CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTTACT-GGTCT-GTGC [401] AY707672_Neotyphodium__Phc CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [399] JX028260_N_coenophialum__La CTGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCT-GTGC [404] JX028261_N_coenophialum__La ATGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [401] JX028262_N_coenophialum__La CTGACTCTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [402] JX028266_Neotyphodium__Fa2 ATGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [402] JX028267_Neotyphodium__Fa2 ---ACTATTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [397] AF457529_Neotyphodium_Fa3 CTGACTTTTGGTGGGG-CACCTCTCAACCACCCGTCACT-GGTCT-GTGC [408] AF457530_Neotyphodium_Fa3 ---ACTATTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [397] AF457532_Neotyphodium_Fa2 ATGACTTTTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [400] AF457531_Neotyphodium_Fa2 ---ACTATTGGTGGGG-CACCTCTCAACC---CGTCACT-GGTCTTGAGC [397] [ 460 470 480 490 500] [ . . . . .] P2C2_typhina TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [445] P3C1_typhina TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [442] P4C2_typhina TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [442] P6_typhina TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [445] P7_typhina TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [445] P10C2_typhina TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [445] P15C2_typhina TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [445] P2C1_elymi CAGA-GACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGG-C [443] P3C2_amarillans TAGAAGACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [443] P4C1_amarillans TAGAAGACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [431] P5C1_amarillans TAGAAGACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [431] P9C2_amarillans TAGAAGACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [443] P10C1_elymi CAGA-GACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGG-C [443] P12C1_amarillans TAGAAGACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [431] P15C1_elymi CAGA-GACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGG-C [444] AF231231_Epichloe_typhina__Pp TAGA-GACGCAAACGAGAGA-------AATAACATGACATTCGCGTGA-C [445] AF231222_Epichloe_typhina__Ao TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-T [444] AF231227_Epichloe_typhina__Php TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [445] AF231226_Epichloe_typhina__Php TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [447] AF231221_Epichloe_typhina__Lp TAGA-GACGCAAACGAGAGA-------TACAACATGACATTCGCGTGA-T [446] AF231223_Epichloe_typhina__Bp TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [442] AF231230_Epichloe_typhina__Pn TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [442] AF231228_Epichloe_typhina__Ps TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [447] HM138506_Neotyphodium_schardlii__Ca TAGA-GACGCAAACGAGAGA-------AATAACATGACATTCGCGTGA-C [443] HM138507_Neotyphodium_schardlii__Ca TAGA-GACGCAAACGAGAGA-------TATAACATGATATTCGCGTGA-C [442] AF231207_Epichloe_clarkii__Hl TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [443] AF231218_Epichloe_sylvatica__Bs TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [444] AF231201_Epichloe_brachyelytri__Bee TAGA-GACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [445] AF231200_Epichloe_brachyelytri__Bee TAGA-GACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [445] AF231195_Epichloe_baconii__At TTGAAGACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [449] AF231193_Epichloe_baconii__As TTGAAGACGCAAACGAGAGAGA-----CAGAACATGACATTCGCGTGGCC [448] AF231196_Epichloe_baconii__Cv TAGAAGACGCAAACGAGAGA-------CATGACATGACATTCGCGTGGCC [442] AF457504_Epichloe_amarillans__So TAGAAGACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [463] AF457505_Epichloe_amarillans__Ah TAGAAGACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [462] AF457506_Epichloe_amarillans__Ap TAGAAGACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [460] AF231213_Epichloe_festucae__Fl TAAAAAACGCAAACGAGAAAGA-----CATGACATGACATTCGCGTGGCC [449] AF231210¬_Epichloe_festucae__Frr TAAAAAACGCAAACGAGAAAGA-----CATGACATGACATTCGCGTGGCC [446] AF457498_E._elymi__Ev TAGA-GACGCAAACGAGAGAGA-----CATGACATGGGATTCGCGTGG-C [448] AF231202_Epichloe_bromicola__Be TAGA-GACGCAAACGAGAGAGT-----CATGACATGACATTCGCGTG-CC [447] AF231217_Epichloe_glyceriae__Gs TAGA-GACGCAAACGAGAGAGACATGACATGGCATGACATTCGCGTGGCC [455] AF231216_Epichloe_glyceriae__Gs TAGA-GACGCAAACGAGAGAGACATGACATGGCATGACATTCGCGTGGCC [455] DQ134034_Epichloe_yangzii__Rk TAGA-GACGCAAACGAGAGAGTCATGACATGACATGACATTCGCGTG-CC [451] DQ134030_Epichloe_yangzii__Rk TAGA-GACGCAAACGAGAGAGT-----CATGACATGACATTCGCGTG-CC [448] JQ756452_Epichloe_poae__Psj TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [446] AF457509_N_chisosum__Se TAGA-GACGCAAACGAGAGAGG-----CATGACATGACATTCGCGTG-CC [443] AF457508_N_chisosum__Se TAGAAGACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [460] AF457510_N_chisosum__Se TAGA-GACGCAAACGAGAGA-------AATAACATGACATTCGCGTGA-C [447] AF457541_N_occultans__Lrr TAGAAGACGCAAACAAGAGAGA-----CATGACATGACATTCGCGGGGGC [443] AF457542_N_occultans__Lrr TAGA-GACGCAAACGAGAGT-------CATGACATGACATTCGCGTG-CC [442] AY707673_N_tembladerae__Ph TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [446] AY707691_N_tembladerae__Ph TAAAAAACGCAAACGAGAAAGA-----CATGACATGACATTCGCGTGGCC [447] AY707677_N_tembladerae__Bs TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [445] AY707658_N_tembladerae__Bs TAAAAAACGCAAACGAGAAAGA-----CATGACATGACATTCGCGTGGCC [447] FJ190584_N_tembladerae__Ba TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [446] FJ190576_N_tembladerae__Ba TAAAAAACGCAAACGAGAAAGA-----CATGACATGACATTCGCGTGGCC [447] AY707675_N_tembladerae__Fh TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [446] AY707661_N_tembladerae__Fh TAAAAAACGCAAACGAGAAAGA-----CATGACAT-------GCGTGGCC [440] AF457518_Neotyphodium__Evi TAGAAGACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [461] AF457517_Neotyphodium__Bp TAGA-GACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGG-C [444] FJ190572_N_pampeanum__Ba TAAAAAACGCAAACGAGAAAGA-----CATGACATGACATTCGCGTGGCC [444] FJ190580_N_pampeanum__Ba TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [445] FJ190570_N_pampeanum__Ba TAAAAAACGCAAACGAGAAAGA-----CATGACATGACATTCGCGTGGCC [444] FJ190578_N_pampeanum__Ba TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [445] AF457513_Neotyphodium_Pau TAGA-GACGCAAACGAGAGAGA-----CATGACATGGGATTCGCGTG--- [441] AF457514_Neotyphodium_Pau TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [443] AF457515_Neotyphodium__Fpa TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [444] AF457516_Neotyphodium__Fpa TAGAAGACGCAAACGAGAGAGAGA---CATGACATGACATTCGCGTAGCC [463] AF532924_Neotyphodiun__Hbo TAGAAGACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [461] AF532923_Neotyphodium__Hbo TAGA-GACGCAAACGAGAGAGA-----CATGACATGGGATTCGCGTGG-C [447] AY163833_Neotyphodium__Hbo TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [446] AF457524_Neotyphodium__Hbo TAGA-GACGCAAACGAGAGAGG-----CATGACATGACATTCGCGTG-CC [443] AF457534_Neotyphodium__Sro TAGA-GACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGG-C [447] AF457533_Neotyphodium__Sro TAAAAAACGCAAACGAGAAAGA-----CATGACATGACATTNGCGTGGCC [447] AY707683_Neotyphodium__Phc TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [442] AY707672_Neotyphodium__Phc TAGAAGACGCAAACGAGAGAGA-----CATGACATGACATTCGCGTGGCC [444] JX028260_N_coenophialum__La TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [445] JX028261_N_coenophialum__La TAAAAAACGCAAACGAGAAAGA-----CATGACATGACATTCGCGTGGCC [446] JX028262_N_coenophialum__La TAGAAGACGCAAACAAGAGAGA-----CATGACATGACATTCGCGGGGCC [447] JX028266_Neotyphodium__Fa2 TAAAAAACGCAAACGAGAAAGA-----CATGA-------TTCGCGTGGCC [440] JX028267_Neotyphodium__Fa2 TAGAAGACGCAAACAAGAGAGA-----CATGACATGACATTCGCGGGGCC [442] AF457529_Neotyphodium_Fa3 TAGA-GACGCAAACGAGAGA-------TATAACATGACATTCGCGTGA-C [449] AF457530_Neotyphodium_Fa3 TAGAAGACGCAAACAAGAGAGA-----CATGACATGACATTCGCGGGGCC [442] AF457532_Neotyphodium_Fa2 TAAAAAACGCAAACGAGAAAGA-----CATGACATGACATTCGCGTGGCC [445] AF457531_Neotyphodium_Fa2 TAGAAGACGCAAACAAGAGAGA-----CATGACATGACATTCGCGGGGCC [442] [ 510 520 530 540 550] [ . . . . .] P2C2_typhina CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [471] P3C1_typhina CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [468] P4C2_typhina CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [468] P6_typhina CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [471] P7_typhina CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [471] P10C2_typhina CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [471] P15C2_typhina CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [471] P2C1_elymi CTCCC----------------AAAAAAAA---TTGTGATGACAAA---TC [471] P3C2_amarillans CCCC-----------------AAAAATTT---TTTTGAT---AAAAAACC [470] P4C1_amarillans CCCC-----------------AAAAATTT---TTTTGAT---AAAAAACC [458] P5C1_amarillans CCCC-----------------AAAAATTT---TTTTGAT---AAAAAACC [458] P9C2_amarillans CCCC-----------------AAAAATTT---TTTTGAT---AAAAAACC [470] P10C1_elymi CTCCC----------------AAAAAAAA---TTGTGATGACAAA---TC [471] P12C1_amarillans CCCC-----------------AAAAATTT---TTTTGAT---AAAAAACC [458] P15C1_elymi CTCCC----------------AAAAAAAA---TTGTGATGACAAA---TC [472] AF231231_Epichloe_typhina__Pp CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [471] AF231222_Epichloe_typhina__Ao CTCCC----------------AAAAAAAAA---TGTGATGACAAA---TC [472] AF231227_Epichloe_typhina__Php CTCCC----------------AAAAAAA----TTGTGATGACAAA---TC [472] AF231226_Epichloe_typhina__Php CTCCC----------------AAAAAAA----TTGTGATGACAAA---TC [474] AF231221_Epichloe_typhina__Lp CTCCC----------------AAAAAAAA----TGTGATGACAAA---TC [473] AF231223_Epichloe_typhina__Bp GTCCC----------------AAAAAAA----TTGTGATGACAAA---TC [469] AF231230_Epichloe_typhina__Pn CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [468] AF231228_Epichloe_typhina__Ps CTCCC----------------AAAAAAA----TTGTGATGACAAA---TC [474] HM138506_Neotyphodium_schardlii__Ca CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [469] HM138507_Neotyphodium_schardlii__Ca CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [468] AF231207_Epichloe_clarkii__Hl CTCCC----------------AAAAAAA----TTGTGATGACAAA---TC [470] AF231218_Epichloe_sylvatica__Bs CTCCC----------------AAAAAAAA---TTGTGATGACAAA---TC [472] AF231201_Epichloe_brachyelytri__Bee -TCCC----------------AAAAAAAA---TTGTGATGACAAA---TC [472] AF231200_Epichloe_brachyelytri__Bee -TCCC----------------AAAAAAAA---TTGTGATGACAAA---TC [472] AF231195_Epichloe_baconii__At CCCC-----------------AAAAAAAA---TTGCGAT---AAAAAATC [476] AF231193_Epichloe_baconii__As CCCC-----------------AAAAAAAA---TTGCGAT---AAAAAATC [475] AF231196_Epichloe_baconii__Cv -TCCC----------------AAAAAAAAA--TTGTGATGACAAA---TT [470] AF457504_Epichloe_amarillans__So CCCC-----------------AAAAAAAA---TTGTGATT--AAAAA-TC [490] AF457505_Epichloe_amarillans__Ah CCCC-----------------AAAAAAAA---TTGTGATT--AAAAA-TC [489] AF457506_Epichloe_amarillans__Ap CCCC-----------------AAAAAAAA---TTGTGATT--AAAAA-TC [487] AF231213_Epichloe_festucae__Fl CACCTCTCCCCCCCCCCCCCCAA-CAAA----TTGTGAT---AAAAAATC [491] AF231210¬_Epichloe_festucae__Frr CACCTCTCCCCCCCCCCCCC-AA-CAAA----TTGTGAT---AAAAAATC [487] AF457498_E._elymi__Ev CTCCC----------------AAAAAAAA---CTGTGATGACAAA---TC [476] AF231202_Epichloe_bromicola__Be CTCCC----------------AAAAAAAAA--CTGTGATGACAAA---TC [476] AF231217_Epichloe_glyceriae__Gs -TCCC----------------AAAAAAAAA--CTGTGATGACAAA---TC [483] AF231216_Epichloe_glyceriae__Gs -TCCC----------------AAAAAAAAA--CTGTGATGACAAA---TC [483] DQ134034_Epichloe_yangzii__Rk CTCCCC---------------AAAAAAAAAAACTGTGATGACAAA---TC [483] DQ134030_Epichloe_yangzii__Rk CTCCC----------------AAAAAAAAAA-CTGTGATGACAAA---TC [478] JQ756452_Epichloe_poae__Psj CTCCC----------------AA-AAA-----TTGTGATGACAAA---TC [471] AF457509_N_chisosum__Se CTCCC----------------AAAAAAAA---TTGTGATGACAAA---TC [471] AF457508_N_chisosum__Se CCCC-----------------AAAAAAAA---TTGTGATT--AAAAA-TC [487] AF457510_N_chisosum__Se CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [473] AF457541_N_occultans__Lrr CCCCC----------------AAAAAAAA---TTGTGAT---AAAAAATC [471] AF457542_N_occultans__Lrr CTCCC----------------AAAAAAAAA--CTGTGATGACAAA---TC [471] AY707673_N_tembladerae__Ph CTCCC----------------AATAAA-----TTGTGATGACAAA---TC [472] AY707691_N_tembladerae__Ph CACCTCTCCCCCCCCCCC---AA-CAAA----TTGTGAT---AAAAAATC [486] AY707677_N_tembladerae__Bs CTCCC----------------AATAAA-----TTGTGATGACAAA---TC [471] AY707658_N_tembladerae__Bs CACCTCTCCCCCCCCCCC---AA-CAAA----TTGTGAT---AAAAAATC [486] FJ190584_N_tembladerae__Ba CTCCC----------------AATAAA-----TTGTGATGACAAA---TC [472] FJ190576_N_tembladerae__Ba CACCTCTCCCCCCCCC-----AA-CAAA----TTGTGAT---AAAAAATC [484] AY707675_N_tembladerae__Fh CTCCC----------------AATAAA-----TTGTGATGACAAA---TC [472] AY707661_N_tembladerae__Fh CACCTCTCCCCCCCCCCC---AA-CAAA----TTGTGAT---AAAAAATC [479] AF457518_Neotyphodium__Evi CCCC-----------------AAAAAAAA---TTGTGATT--AAAAA-TC [488] AF457517_Neotyphodium__Bp CTCCC----------------AAAAAAAA---CCGTGATGACAAA---TC [472] FJ190572_N_pampeanum__Ba CACCTCTCCCCCCCCCCCT--AA-CAAA----TTGTGAT---AAAAAATC [484] FJ190580_N_pampeanum__Ba CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [471] FJ190570_N_pampeanum__Ba CACCTCTCCCCCCCCCCCT--AA-CAAA----TTGTGAT---AAAAAATC [484] FJ190578_N_pampeanum__Ba CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [471] AF457513_Neotyphodium_Pau --CCC----------------AAAAAAAA---CTGTGATGACAAA---TC [467] AF457514_Neotyphodium_Pau CTCCC----------------AAAAAA-----TTGTGACGACAAA---TC [469] AF457515_Neotyphodium__Fpa CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [470] AF457516_Neotyphodium__Fpa CCCC-----------------AAAAAAA----TTGTGATT--AAAAA-TC [489] AF532924_Neotyphodiun__Hbo CCCC-----------------AAAAAAAA---TTGTGATT--AAAAA-TC [488] AF532923_Neotyphodium__Hbo CTCCC----------------AAAAAAAA---CTGTGATGACAAA---TC [475] AY163833_Neotyphodium__Hbo CTCCC----------------AAAAAAA----TTGTGATGACAAA---TC [473] AF457524_Neotyphodium__Hbo CTCCC----------------AAAAAAAAA--TTGTGATGACAAA---TC [472] AF457534_Neotyphodium__Sro CTCCC----------------AAAAAAAA---CTGTGATGACAAA---TC [475] AF457533_Neotyphodium__Sro CACCTNTCCCCCCCCCCC---AA-CAAA----TTGTGAT---AAAAAATC [486] AY707683_Neotyphodium__Phc CTCCC----------------AAAAAA-----TTGTGATGACAAA---TC [468] AY707672_Neotyphodium__Phc CCCC-----------------AAAAAATT---TTTTGAT---AAAAAACC [471] JX028260_N_coenophialum__La CTAAC----------------AAAAAA-----TTGTGATGACAAA---TC [471] JX028261_N_coenophialum__La CACCTCTCCCCCCCCCCCC--AA-CAAA----TTGTGAT---AAAAAATC [486] JX028262_N_coenophialum__La CCCCC----------------AAAAAAAAA--TTGTGAT---AAAAAATC [476] JX028266_Neotyphodium__Fa2 CACCTCTCCCCCCCCCCCCC-AA-CAAA----TTGTGAT---AAAAAATC [481] JX028267_Neotyphodium__Fa2 CCCCC----------------AAAAAAAA---TTGAGAT---AAAAAATC [470] AF457529_Neotyphodium_Fa3 CTCCC----------------AAAAAAA----TTGTGATGACATA---TC [476] AF457530_Neotyphodium_Fa3 CCCCC----------------AAAAAAAA---TTGAGAT---AAAAAATC [470] AF457532_Neotyphodium_Fa2 CACCTCTCCCCCCCCCCCCC-AAACAAA----TTGTGAT---AAAAAATC [487] AF457531_Neotyphodium_Fa2 CCCCC----------------AAAAAAAA---TTGAGAT---AAAAAATC [470] [ 560 570 580 590 600] [ . . . . .] P2C2_typhina ACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] P3C1_typhina ACTGACTTGCGTTTTCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [518] P4C2_typhina ACTGACTTGCGTTTTCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [518] P6_typhina ACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] P7_typhina ACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] P10C2_typhina ACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] P15C2_typhina ACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] P2C1_elymi ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] P3C2_amarillans ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [520] P4C1_amarillans ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [508] P5C1_amarillans ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [508] P9C2_amarillans ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [520] P10C1_elymi ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] P12C1_amarillans ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [508] P15C1_elymi ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [522] AF231231_Epichloe_typhina__Pp ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] AF231222_Epichloe_typhina__Ao ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [522] AF231227_Epichloe_typhina__Php ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [522] AF231226_Epichloe_typhina__Php ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [524] AF231221_Epichloe_typhina__Lp ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [523] AF231223_Epichloe_typhina__Bp ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [519] AF231230_Epichloe_typhina__Pn ACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [518] AF231228_Epichloe_typhina__Ps ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [524] HM138506_Neotyphodium_schardlii__Ca ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [519] HM138507_Neotyphodium_schardlii__Ca ACTGACTTGCGTTTTCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [518] AF231207_Epichloe_clarkii__Hl ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [520] AF231218_Epichloe_sylvatica__Bs ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [522] AF231201_Epichloe_brachyelytri__Bee ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [522] AF231200_Epichloe_brachyelytri__Bee ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [522] AF231195_Epichloe_baconii__At ACTGACTTGCCTTCGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [526] AF231193_Epichloe_baconii__As ACTGACTTGCCTTCGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [525] AF231196_Epichloe_baconii__Cv ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [520] AF457504_Epichloe_amarillans__So ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [540] AF457505_Epichloe_amarillans__Ah ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [539] AF457506_Epichloe_amarillans__Ap ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [537] AF231213_Epichloe_festucae__Fl ACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [541] AF231210¬_Epichloe_festucae__Frr ACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [537] AF457498_E._elymi__Ev ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [526] AF231202_Epichloe_bromicola__Be ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [526] AF231217_Epichloe_glyceriae__Gs ACTGACTTGCCTTCGCTCTACAGGAAGCCGCCGAACTCGGAAAGGCTTCT [533] AF231216_Epichloe_glyceriae__Gs ACTGACTTGCCTTCGCTCTACAGGAAGCCGCCGAACTCGGAAAGGCTTCT [533] DQ134034_Epichloe_yangzii__Rk ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [533] DQ134030_Epichloe_yangzii__Rk ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [528] JQ756452_Epichloe_poae__Psj ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] AF457509_N_chisosum__Se ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] AF457508_N_chisosum__Se ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [537] AF457510_N_chisosum__Se ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [523] AF457541_N_occultans__Lrr ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] AF457542_N_occultans__Lrr ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTTGGAAAGGGTTCT [521] AY707673_N_tembladerae__Ph ACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [522] AY707691_N_tembladerae__Ph ACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [536] AY707677_N_tembladerae__Bs ACTGACTTGCGTGTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] AY707658_N_tembladerae__Bs ACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [536] FJ190584_N_tembladerae__Ba ACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [522] FJ190576_N_tembladerae__Ba ACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [534] AY707675_N_tembladerae__Fh ACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [522] AY707661_N_tembladerae__Fh ACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [529] AF457518_Neotyphodium__Evi ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [538] AF457517_Neotyphodium__Bp ACTGACTCGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [522] FJ190572_N_pampeanum__Ba ACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [534] FJ190580_N_pampeanum__Ba ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] FJ190570_N_pampeanum__Ba ACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [534] FJ190578_N_pampeanum__Ba ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] AF457513_Neotyphodium_Pau ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [517] AF457514_Neotyphodium_Pau ACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [519] AF457515_Neotyphodium__Fpa ACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [520] AF457516_Neotyphodium__Fpa ACTGACTTGTCTTGGCTCTGTAGGAAGCCGCCGAACTCGGAAAAGGTTCT [539] AF532924_Neotyphodiun__Hbo ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [538] AF532923_Neotyphodium__Hbo ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [525] AY163833_Neotyphodium__Hbo ACTTACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [523] AF457524_Neotyphodium__Hbo ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [522] AF457534_Neotyphodium__Sro ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [525] AF457533_Neotyphodium__Sro ACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [536] AY707683_Neotyphodium__Phc ACTGACTTGCGTTTTCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [518] AY707672_Neotyphodium__Phc ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] JX028260_N_coenophialum__La ACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [521] JX028261_N_coenophialum__La ACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [536] JX028262_N_coenophialum__La ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [526] JX028266_Neotyphodium__Fa2 ACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [531] JX028267_Neotyphodium__Fa2 ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [520] AF457529_Neotyphodium_Fa3 ACTGACTTGCCTTTACTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCT [526] AF457530_Neotyphodium_Fa3 ACTGACTTGCCTTCGCTCTCTAGGAAGCCGCCGAACTCGGAAAGGGTTCT [520] AF457532_Neotyphodium_Fa2 ACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [537] AF457531_Neotyphodium_Fa2 ACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCT [520] [ 610 620 630 640 650] [ . . . . .] P2C2_typhina TTCAAAT-----------------------------------------GG [530] P3C1_typhina TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [568] P4C2_typhina TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [568] P6_typhina TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] P7_typhina TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] P10C2_typhina TTCAAAT-----------------------------------------GG [530] P15C2_typhina TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] P2C1_elymi TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] P3C2_amarillans TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [570] P4C1_amarillans TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [558] P5C1_amarillans TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [558] P9C2_amarillans TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [570] P10C1_elymi TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] P12C1_amarillans TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [558] P15C1_elymi TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [572] AF231231_Epichloe_typhina__Pp TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] AF231222_Epichloe_typhina__Ao TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [572] AF231227_Epichloe_typhina__Php TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [572] AF231226_Epichloe_typhina__Php TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [574] AF231221_Epichloe_typhina__Lp TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [573] AF231223_Epichloe_typhina__Bp TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [569] AF231230_Epichloe_typhina__Pn TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [568] AF231228_Epichloe_typhina__Ps TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [574] HM138506_Neotyphodium_schardlii__Ca TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [569] HM138507_Neotyphodium_schardlii__Ca TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [568] AF231207_Epichloe_clarkii__Hl TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [570] AF231218_Epichloe_sylvatica__Bs TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [572] AF231201_Epichloe_brachyelytri__Bee TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [572] AF231200_Epichloe_brachyelytri__Bee TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [572] AF231195_Epichloe_baconii__At TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [576] AF231193_Epichloe_baconii__As TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [575] AF231196_Epichloe_baconii__Cv TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [570] AF457504_Epichloe_amarillans__So TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [590] AF457505_Epichloe_amarillans__Ah TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [589] AF457506_Epichloe_amarillans__Ap TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [587] AF231213_Epichloe_festucae__Fl TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [591] AF231210¬_Epichloe_festucae__Frr TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [587] AF457498_E._elymi__Ev TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [576] AF231202_Epichloe_bromicola__Be TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [576] AF231217_Epichloe_glyceriae__Gs TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [583] AF231216_Epichloe_glyceriae__Gs TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [583] DQ134034_Epichloe_yangzii__Rk TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [583] DQ134030_Epichloe_yangzii__Rk TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [578] JQ756452_Epichloe_poae__Psj TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] AF457509_N_chisosum__Se TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] AF457508_N_chisosum__Se TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [587] AF457510_N_chisosum__Se TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [573] AF457541_N_occultans__Lrr TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] AF457542_N_occultans__Lrr TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] AY707673_N_tembladerae__Ph TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [572] AY707691_N_tembladerae__Ph TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [586] AY707677_N_tembladerae__Bs TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] AY707658_N_tembladerae__Bs TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [586] FJ190584_N_tembladerae__Ba TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [572] FJ190576_N_tembladerae__Ba TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [584] AY707675_N_tembladerae__Fh TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [572] AY707661_N_tembladerae__Fh TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [579] AF457518_Neotyphodium__Evi TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [588] AF457517_Neotyphodium__Bp TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [572] FJ190572_N_pampeanum__Ba TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [584] FJ190580_N_pampeanum__Ba TTCAAATATGCATGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] FJ190570_N_pampeanum__Ba TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [584] FJ190578_N_pampeanum__Ba TTCAAATATGCATGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] AF457513_Neotyphodium_Pau TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [567] AF457514_Neotyphodium_Pau TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [569] AF457515_Neotyphodium__Fpa TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [570] AF457516_Neotyphodium__Fpa TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [589] AF532924_Neotyphodiun__Hbo TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [588] AF532923_Neotyphodium__Hbo TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [575] AY163833_Neotyphodium__Hbo TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [573] AF457524_Neotyphodium__Hbo TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [572] AF457534_Neotyphodium__Sro TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [575] AF457533_Neotyphodium__Sro TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [586] AY707683_Neotyphodium__Phc TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [568] AY707672_Neotyphodium__Phc TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] JX028260_N_coenophialum__La TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [571] JX028261_N_coenophialum__La TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [586] JX028262_N_coenophialum__La TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [576] JX028266_Neotyphodium__Fa2 TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [581] JX028267_Neotyphodium__Fa2 TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [570] AF457529_Neotyphodium_Fa3 TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [576] AF457530_Neotyphodium_Fa3 TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [570] AF457532_Neotyphodium_Fa2 TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [587] AF457531_Neotyphodium_Fa2 TTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGG [570] [ 660 670 680 690 700] [ . . . . .] P2C2_typhina TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [580] P3C1_typhina TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [618] P4C2_typhina TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [618] P6_typhina TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] P7_typhina TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] P10C2_typhina TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [580] P15C2_typhina TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] P2C1_elymi TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] P3C2_amarillans TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [620] P4C1_amarillans TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [608] P5C1_amarillans TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [608] P9C2_amarillans TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [620] P10C1_elymi TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] P12C1_amarillans TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [608] P15C1_elymi TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [622] AF231231_Epichloe_typhina__Pp TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] AF231222_Epichloe_typhina__Ao TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [622] AF231227_Epichloe_typhina__Php TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [622] AF231226_Epichloe_typhina__Php TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [624] AF231221_Epichloe_typhina__Lp TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [623] AF231223_Epichloe_typhina__Bp TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [619] AF231230_Epichloe_typhina__Pn TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [618] AF231228_Epichloe_typhina__Ps TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [624] HM138506_Neotyphodium_schardlii__Ca TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [619] HM138507_Neotyphodium_schardlii__Ca TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [618] AF231207_Epichloe_clarkii__Hl TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [620] AF231218_Epichloe_sylvatica__Bs TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [622] AF231201_Epichloe_brachyelytri__Bee TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [622] AF231200_Epichloe_brachyelytri__Bee TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [622] AF231195_Epichloe_baconii__At TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [626] AF231193_Epichloe_baconii__As TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [625] AF231196_Epichloe_baconii__Cv TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [620] AF457504_Epichloe_amarillans__So TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [640] AF457505_Epichloe_amarillans__Ah TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [639] AF457506_Epichloe_amarillans__Ap TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [637] AF231213_Epichloe_festucae__Fl TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [641] AF231210¬_Epichloe_festucae__Frr TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [637] AF457498_E._elymi__Ev TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [626] AF231202_Epichloe_bromicola__Be TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [626] AF231217_Epichloe_glyceriae__Gs TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTTTG [633] AF231216_Epichloe_glyceriae__Gs TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTTTG [633] DQ134034_Epichloe_yangzii__Rk TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [633] DQ134030_Epichloe_yangzii__Rk TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [628] JQ756452_Epichloe_poae__Psj TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] AF457509_N_chisosum__Se TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] AF457508_N_chisosum__Se TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCTCAAGTACTATG [637] AF457510_N_chisosum__Se TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [623] AF457541_N_occultans__Lrr TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] AF457542_N_occultans__Lrr TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] AY707673_N_tembladerae__Ph TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [622] AY707691_N_tembladerae__Ph TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [636] AY707677_N_tembladerae__Bs TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] AY707658_N_tembladerae__Bs TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [636] FJ190584_N_tembladerae__Ba TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [622] FJ190576_N_tembladerae__Ba TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [634] AY707675_N_tembladerae__Fh TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [622] AY707661_N_tembladerae__Fh TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [629] AF457518_Neotyphodium__Evi TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [638] AF457517_Neotyphodium__Bp TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [622] FJ190572_N_pampeanum__Ba TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [634] FJ190580_N_pampeanum__Ba TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] FJ190570_N_pampeanum__Ba TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [634] FJ190578_N_pampeanum__Ba TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] AF457513_Neotyphodium_Pau TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [617] AF457514_Neotyphodium_Pau TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [619] AF457515_Neotyphodium__Fpa TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [620] AF457516_Neotyphodium__Fpa TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [639] AF532924_Neotyphodiun__Hbo TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [638] AF532923_Neotyphodium__Hbo TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [625] AY163833_Neotyphodium__Hbo TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [623] AF457524_Neotyphodium__Hbo TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [622] AF457534_Neotyphodium__Sro TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [625] AF457533_Neotyphodium__Sro TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [636] AY707683_Neotyphodium__Phc TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [618] AY707672_Neotyphodium__Phc TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] JX028260_N_coenophialum__La TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [621] JX028261_N_coenophialum__La TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [636] JX028262_N_coenophialum__La TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [626] JX028266_Neotyphodium__Fa2 TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [631] JX028267_Neotyphodium__Fa2 TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [620] AF457529_Neotyphodium_Fa3 TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [626] AF457530_Neotyphodium_Fa3 TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [620] AF457532_Neotyphodium_Fa2 TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [637] AF457531_Neotyphodium_Fa2 TATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATG [620] [ 710 720 730 740 750] [ . . . . .] P2C2_typhina TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [629] P3C1_typhina TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [667] P4C2_typhina TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [667] P6_typhina TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [670] P7_typhina TCACCGTCATTGGTAAGCCTTGATCGACATATCC-TCGACGCGTTCCGGT [670] P10C2_typhina TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [629] P15C2_typhina TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [670] P2C1_elymi TCACCGTCATTGGTAAGCCTCGGTCGACACACCC-TCGACGCGTTCCGGT [670] P3C2_amarillans TCACCGTCATTGGTAAGCCTTGGTCGATGCATCC-TCGACGCGTTCCGGT [669] P4C1_amarillans TCACCGTCATTGGTAAGCCTTGGTCGATGCATCC-TCGACGCGTTCCGGT [657] P5C1_amarillans TCACCGTCATTGGTAAGCCTTGGTCGATGCATCC-TCGACGCGTTCCGGT [657] P9C2_amarillans TCACCGTCATTGGTAAGCCTTGGTCGATGCATCC-TCGACGCGTTCCGGT [669] P10C1_elymi TCACCGTCATTGGTAAGCCTCGGTCGACACACCC-TCGACGCGTTCCGGT [670] P12C1_amarillans TCACCGTCATTGGTAAGCCTTGGTCGATGCATCC-TCGACGCGTTCCGGT [657] P15C1_elymi TCACCGTCATTGGTAAGCCTCGGTCGACACACCC-TCGACGCGTTCCGGT [671] AF231231_Epichloe_typhina__Pp TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGATGCGTTCCGGT [670] AF231222_Epichloe_typhina__Ao TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [671] AF231227_Epichloe_typhina__Php TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCCGT [671] AF231226_Epichloe_typhina__Php TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCCGT [673] AF231221_Epichloe_typhina__Lp TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCCGT [672] AF231223_Epichloe_typhina__Bp TCACCGTCATTGGTAAGCCCTGGTCGACAAATCC-TCGACGCGTTCCGGT [668] AF231230_Epichloe_typhina__Pn TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [667] AF231228_Epichloe_typhina__Ps TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCCGT [673] HM138506_Neotyphodium_schardlii__Ca TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [668] HM138507_Neotyphodium_schardlii__Ca TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [667] AF231207_Epichloe_clarkii__Hl TCACCGTCATTGGTAAGCCTTGGTCGACACATCCCTCGACGCGTTCCAGT [670] AF231218_Epichloe_sylvatica__Bs TCACCGTCATTGGTAAGCCTTGGTCGACAAATCC-TCGACGCGTTCCGGT [671] AF231201_Epichloe_brachyelytri__Bee TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [671] AF231200_Epichloe_brachyelytri__Bee TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [671] AF231195_Epichloe_baconii__At TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [675] AF231193_Epichloe_baconii__As TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [674] AF231196_Epichloe_baconii__Cv TCACCGTCATTGGTAAGCCTTGGTCGATACACCC-TCGACGCGTTCCGGT [669] AF457504_Epichloe_amarillans__So TCACCGTCATTGGTAAGCCTTGGTCGACGCATCC-TCGACGCGTTCCGGT [689] AF457505_Epichloe_amarillans__Ah TCACCGTCATTGGTAAGCCTTGGTCGACGCAGCC-TCGACGCGTTCCGGT [688] AF457506_Epichloe_amarillans__Ap TCACCGTCATTGGTAAGCCTTGGTCGATGCATCC-TCGACGCGTTCCGGT [686] AF231213_Epichloe_festucae__Fl TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [690] AF231210¬_Epichloe_festucae__Frr TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [686] AF457498_E._elymi__Ev TCACCGTCATTGGTAAGCCTTGGTCGACACACCC-TCGACGCGTTCCGGT [675] AF231202_Epichloe_bromicola__Be TCACCGTCATTGGTAAGCCTTGGTCGACACAGCC-TCGACGCGTTCCGGT [675] AF231217_Epichloe_glyceriae__Gs TCACCGTCATTGGTAAGCCTTGGTCGACACAT----CGACGCGTTCCGGT [679] AF231216_Epichloe_glyceriae__Gs TCACCGTCATTGGTAAGCCTTGGTCGACACAT----CGACGCGTTCCGGT [679] DQ134034_Epichloe_yangzii__Rk TCACCGTCATTGGTAAGCCTTGGTCGACACAGCC-TCGACGCGTTCCGGT [682] DQ134030_Epichloe_yangzii__Rk TCACCGTCATTGGTAAGCCTTGGTCGACACAGCC-TCGACGCGTTCCGGT [677] JQ756452_Epichloe_poae__Psj TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [670] AF457509_N_chisosum__Se TCACCGTCATTGGTAAGCCTTGGTCGACACAGCC-TCGACGCGTTCCGGT [670] AF457508_N_chisosum__Se TCACCGTCATTGGTAAGCCTTGGTCGATGCACCC-TCGACGCGTTCCGGT [686] AF457510_N_chisosum__Se TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [672] AF457541_N_occultans__Lrr TCACTGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [670] AF457542_N_occultans__Lrr TCACCGTCATTGGTAAGCCTTGGTCGACACAGCC-TCGACGCGTTCCGGT [670] AY707673_N_tembladerae__Ph TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [671] AY707691_N_tembladerae__Ph TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [685] AY707677_N_tembladerae__Bs TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [670] AY707658_N_tembladerae__Bs TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [685] FJ190584_N_tembladerae__Ba TCACCGTCATTGGTAAGCCTTGATCGACACAT------------------ [654] FJ190576_N_tembladerae__Ba TCACCGTCATTGGTAAGCCTTGGTCGACACAT------------------ [666] AY707675_N_tembladerae__Fh TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [671] AY707661_N_tembladerae__Fh TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [678] AF457518_Neotyphodium__Evi TCACCGTCATTGGTAAGCCTTGGTCGATGCATCC-TCGACGCGTTCCGGT [687] AF457517_Neotyphodium__Bp TCACCGTCATTGGTAAGCCTTGGTCGACACACCC-TCGACGCGTTCCGGT [671] FJ190572_N_pampeanum__Ba TCACCGTCATTGGTAAGCCTTGGTCGACACAT------------------ [666] FJ190580_N_pampeanum__Ba TCACCGTCATTGGTAAGCCTTGATCGACACAT------------------ [653] FJ190570_N_pampeanum__Ba TCACCGTCATTGGTAAGCCTTGGTCGACACAT------------------ [666] FJ190578_N_pampeanum__Ba TCACCGTCATTGGTAAGCCTTGATCGACACAT------------------ [653] AF457513_Neotyphodium_Pau TCACCGTCATTGGTAAGCCTTGGTCGACACACCC-TCGACGCGTTCCGGT [666] AF457514_Neotyphodium_Pau TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [668] AF457515_Neotyphodium__Fpa TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [669] AF457516_Neotyphodium__Fpa TCACCGTCATTGGTAAGCCTTGGTCGATGCATCC-TCGACACGTTCCGGT [688] AF532924_Neotyphodiun__Hbo TCACCGTCATTGGTAAGCCTTGGTCGATGCATCC-TCGACGCGTTCCGGT [687] AF532923_Neotyphodium__Hbo TCACCGTCATTGGTAAGCCTTGGTCGACACACCC-TCGACGCGTTCCGGT [674] AY163833_Neotyphodium__Hbo TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCAGT [672] AF457524_Neotyphodium__Hbo TCACCGTCATTGGTAAGCCTTGGTCGACACAGCC-TCGACGCGTTCCAGT [671] AF457534_Neotyphodium__Sro TCACCGTCATTGGTAAGCCTTGGTCGACACACCC-TCGACGCGTTCCGGT [674] AF457533_Neotyphodium__Sro TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [685] AY707683_Neotyphodium__Phc TCACCGTCATTGGTAAGCCTTGATCGACACATGC-TCGACGCGTTCCGGT [667] AY707672_Neotyphodium__Phc TCACCGTCATTGGTAAGCCTTGGTCGATGCATCC-TCGACGCGTTCCGGT [670] JX028260_N_coenophialum__La TCACCGTCATTGGTAAGCCTTGATCGACACATCC-TCGACGCGTTCCGGT [670] JX028261_N_coenophialum__La TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [685] JX028262_N_coenophialum__La TCACTGTCATTGGTAAGCCTTGGTCGACACGTCC-TCGACGCGTTCCGGT [675] JX028266_Neotyphodium__Fa2 TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [680] JX028267_Neotyphodium__Fa2 TCACTGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [669] AF457529_Neotyphodium_Fa3 TCACCGTCATTGGTAAGCCTTTGTTGACACATCC-TCGACGCGTTCCCGT [675] AF457530_Neotyphodium_Fa3 TCACTGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [669] AF457532_Neotyphodium_Fa2 TCACCGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [686] AF457531_Neotyphodium_Fa2 TCACTGTCATTGGTAAGCCTTGGTCGACACATCC-TCGACGCGTTCCGGT [669] [ 760 770 780 790 800] [ . . . . .] P2C2_typhina GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [668] P3C1_typhina GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [706] P4C2_typhina GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [706] P6_typhina GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [709] P7_typhina GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [709] P10C2_typhina GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [668] P15C2_typhina GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [709] P2C1_elymi GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [709] P3C2_amarillans GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [708] P4C1_amarillans GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [696] P5C1_amarillans GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [696] P9C2_amarillans GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [708] P10C1_elymi GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [709] P12C1_amarillans GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [696] P15C1_elymi GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [710] AF231231_Epichloe_typhina__Pp GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [709] AF231222_Epichloe_typhina__Ao GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [710] AF231227_Epichloe_typhina__Php GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [710] AF231226_Epichloe_typhina__Php GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCCGAGCCCGGCCAC [717] AF231221_Epichloe_typhina__Lp GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [711] AF231223_Epichloe_typhina__Bp GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [707] AF231230_Epichloe_typhina__Pn GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [706] AF231228_Epichloe_typhina__Ps GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCCGAGCCCGGCCAC [717] HM138506_Neotyphodium_schardlii__Ca GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [707] HM138507_Neotyphodium_schardlii__Ca GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [706] AF231207_Epichloe_clarkii__Hl GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [709] AF231218_Epichloe_sylvatica__Bs GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [710] AF231201_Epichloe_brachyelytri__Bee GTT----GAGCCCC--TGATTTCGAACCCCGCCGAGTG-----CGGCCAC [710] AF231200_Epichloe_brachyelytri__Bee GTT----GAGCCCC--TGATTTCGAACCCCGCCGAGTG-----CGGCCAC [710] AF231195_Epichloe_baconii__At GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [714] AF231193_Epichloe_baconii__As GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [713] AF231196_Epichloe_baconii__Cv GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [708] AF457504_Epichloe_amarillans__So GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [728] AF457505_Epichloe_amarillans__Ah GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [727] AF457506_Epichloe_amarillans__Ap GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [725] AF231213_Epichloe_festucae__Fl GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [729] AF231210¬_Epichloe_festucae__Frr GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [725] AF457498_E._elymi__Ev GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [714] AF231202_Epichloe_bromicola__Be GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [714] AF231217_Epichloe_glyceriae__Gs GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [718] AF231216_Epichloe_glyceriae__Gs GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [718] DQ134034_Epichloe_yangzii__Rk GTTGATTGAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [725] DQ134030_Epichloe_yangzii__Rk GTTGATTGAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [720] JQ756452_Epichloe_poae__Psj GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [709] AF457509_N_chisosum__Se GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [709] AF457508_N_chisosum__Se GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [725] AF457510_N_chisosum__Se GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [711] AF457541_N_occultans__Lrr GTT----GAGCCCC--TGATTTCGTACCCCCCCGAGCC-----CGGCCAC [709] AF457542_N_occultans__Lrr GTT----GAGCCCC--TGATTTCGTACCCCGCCGAACC-----CGGCCAC [709] AY707673_N_tembladerae__Ph GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [710] AY707691_N_tembladerae__Ph GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [724] AY707677_N_tembladerae__Bs GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [709] AY707658_N_tembladerae__Bs GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [724] FJ190584_N_tembladerae__Ba -------------------------------------------------- [654] FJ190576_N_tembladerae__Ba -------------------------------------------------- [666] AY707675_N_tembladerae__Fh GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [710] AY707661_N_tembladerae__Fh GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [717] AF457518_Neotyphodium__Evi GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [726] AF457517_Neotyphodium__Bp GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [710] FJ190572_N_pampeanum__Ba -------------------------------------------------- [666] FJ190580_N_pampeanum__Ba -------------------------------------------------- [653] FJ190570_N_pampeanum__Ba -------------------------------------------------- [666] FJ190578_N_pampeanum__Ba -------------------------------------------------- [653] AF457513_Neotyphodium_Pau GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [705] AF457514_Neotyphodium_Pau GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [707] AF457515_Neotyphodium__Fpa GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [708] AF457516_Neotyphodium__Fpa GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [727] AF532924_Neotyphodiun__Hbo GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [726] AF532923_Neotyphodium__Hbo GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [713] AY163833_Neotyphodium__Hbo GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [711] AF457524_Neotyphodium__Hbo GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [710] AF457534_Neotyphodium__Sro GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [713] AF457533_Neotyphodium__Sro GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [724] AY707683_Neotyphodium__Phc GTC----GAGCCCC--TGATTTCGTACCCCGCGGAGCC-----CGGCCAC [706] AY707672_Neotyphodium__Phc GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [709] JX028260_N_coenophialum__La GTC----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [709] JX028261_N_coenophialum__La GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [724] JX028262_N_coenophialum__La GTT----GAGCCCCCCTGATTTCGTACCCCGCCGAGCC-----CGGCCAC [716] JX028266_Neotyphodium__Fa2 GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [719] JX028267_Neotyphodium__Fa2 GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [708] AF457529_Neotyphodium_Fa3 GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [714] AF457530_Neotyphodium_Fa3 GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [708] AF457532_Neotyphodium_Fa2 GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [725] AF457531_Neotyphodium_Fa2 GTT----GAGCCCC--TGATTTCGTACCCCGCCGAGCC-----CGGCCAC [708] [ 810 820 830 840 850] [ . . . . .] P2C2_typhina GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [716] P3C1_typhina GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [754] P4C2_typhina GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [754] P6_typhina GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [757] P7_typhina GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [757] P10C2_typhina GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [716] P15C2_typhina GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [757] P2C1_elymi GACGT-GCACGCCCAATGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [757] P3C2_amarillans GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [756] P4C1_amarillans GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [744] P5C1_amarillans GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [744] P9C2_amarillans GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [756] P10C1_elymi GACGT-GCACGCCCAATGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [757] P12C1_amarillans GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [744] P15C1_elymi GACGT-GCACGCCCAATGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [758] AF231231_Epichloe_typhina__Pp GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [757] AF231222_Epichloe_typhina__Ao GACGT-GCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGACAA [759] AF231227_Epichloe_typhina__Php GACGT-GCACGCCCAACGGACAAGTCGTGGTGAGAGGCGGACCGAGACAA [759] AF231226_Epichloe_typhina__Php GACGT-GCACGCCCAACGGACAAGTCGTGATGAGAGGCGGGCCGAGACAA [766] AF231221_Epichloe_typhina__Lp GACGT-GCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGACAA [760] AF231223_Epichloe_typhina__Bp GACGT-GCACGCCCAACGGACAAGTCATGATGAGAGGCGGACCGAGACAA [756] AF231230_Epichloe_typhina__Pn GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [754] AF231228_Epichloe_typhina__Ps GACGT-GCACGCCCAACGGACAAGTCGTGATGAGAGGCGGGCCGAGACAA [766] HM138506_Neotyphodium_schardlii__Ca GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [755] HM138507_Neotyphodium_schardlii__Ca GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [754] AF231207_Epichloe_clarkii__Hl GACGT-GCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGACAA [758] AF231218_Epichloe_sylvatica__Bs GACGT-GCACGCCCAACGGACA-GTAGTGATGAGAGGCGGACCGAGACAA [758] AF231201_Epichloe_brachyelytri__Bee GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [758] AF231200_Epichloe_brachyelytri__Bee GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [758] AF231195_Epichloe_baconii__At GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGATCGAGACAA [762] AF231193_Epichloe_baconii__As GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGATCGAGACAA [761] AF231196_Epichloe_baconii__Cv GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [756] AF457504_Epichloe_amarillans__So GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [776] AF457505_Epichloe_amarillans__Ah GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [775] AF457506_Epichloe_amarillans__Ap GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [773] AF231213_Epichloe_festucae__Fl GAAGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [777] AF231210¬_Epichloe_festucae__Frr GAAGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [773] AF457498_E._elymi__Ev GACGT-GCACGCCCAATGGACAAGTCGTGATGAGAGGCGGACCGAGACAA [763] AF231202_Epichloe_bromicola__Be GACGT-GCACGCCCAATGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [762] AF231217_Epichloe_glyceriae__Gs GACGT-GCACGCCCAATGGACA-GTCGTGATGAGAGGCGGATCGAGACAA [766] AF231216_Epichloe_glyceriae__Gs GACGT-GCACGCCCAATGGACA-GTCGTGATGAGAGGCGGATCGAGACAA [766] DQ134034_Epichloe_yangzii__Rk GACGT-GCACGCCCAATGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [773] DQ134030_Epichloe_yangzii__Rk GACGT-GCACGCCCAATGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [768] JQ756452_Epichloe_poae__Psj GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [757] AF457509_N_chisosum__Se GACGT-GCACGCCCAATGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [757] AF457508_N_chisosum__Se GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [773] AF457510_N_chisosum__Se GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [759] AF457541_N_occultans__Lrr GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGATCGAGACAA [757] AF457542_N_occultans__Lrr GACGT-GCACGCCCAATGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [757] AY707673_N_tembladerae__Ph GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [758] AY707691_N_tembladerae__Ph GAAGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [772] AY707677_N_tembladerae__Bs GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [757] AY707658_N_tembladerae__Bs GAAGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [772] FJ190584_N_tembladerae__Ba ---GT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [699] FJ190576_N_tembladerae__Ba ---GT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [711] AY707675_N_tembladerae__Fh GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [758] AY707661_N_tembladerae__Fh GAAGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [765] AF457518_Neotyphodium__Evi GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [774] AF457517_Neotyphodium__Bp GACGT-GCACGCCCAATGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [758] FJ190572_N_pampeanum__Ba ---GT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [711] FJ190580_N_pampeanum__Ba ---GT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [698] FJ190570_N_pampeanum__Ba ---GT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [711] FJ190578_N_pampeanum__Ba ---GT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [698] AF457513_Neotyphodium_Pau GACGTTGCACGCCCAATGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [754] AF457514_Neotyphodium_Pau GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [755] AF457515_Neotyphodium__Fpa GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [756] AF457516_Neotyphodium__Fpa GACGT-GCACGCCCAACGAACT-CTCGTGATGAGAGGCGGACCGAGACAA [775] AF532924_Neotyphodiun__Hbo GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [774] AF532923_Neotyphodium__Hbo GACGT-GCACGCCCAATGGACAAGTCGTGATGAGAGGCGGACCGAGACAA [762] AY163833_Neotyphodium__Hbo GACGT-GCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGACAA [760] AF457524_Neotyphodium__Hbo GACGT-GCACGCCCAATGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [758] AF457534_Neotyphodium__Sro GACGTTGCACGCCCAATGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [762] AF457533_Neotyphodium__Sro GAAGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [772] AY707683_Neotyphodium__Phc GACGT-GCACGCCCAACGGACA-GTCGTGATGGGAGGCGGACCGAGACAA [754] AY707672_Neotyphodium__Phc GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [757] JX028260_N_coenophialum__La GACGT-GCACGCCCAACGGACA-GTCGTGATGAGAGGCGGACCGAGACAA [757] JX028261_N_coenophialum__La GAAGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [772] JX028262_N_coenophialum__La GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGATCGAGACAA [764] JX028266_Neotyphodium__Fa2 GAAGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [767] JX028267_Neotyphodium__Fa2 GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGATCGAGACAA [756] AF457529_Neotyphodium_Fa3 GACGT-GCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGACAA [763] AF457530_Neotyphodium_Fa3 GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGATCGAGACAA [756] AF457532_Neotyphodium_Fa2 GAAGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGACCGAGACAA [773] AF457531_Neotyphodium_Fa2 GACGT-GCACGCCCAACGAACA-GTCGTGATGAGAGGCGGATCGAGACAA [756] [ 860 870 880 890 900] [ . . . . .] P2C2_typhina CA----TCATTGAATGCGGTATTCGAGAGCTGT--GCTGACCTTTTT--- [757] P3C1_typhina CA----TCATTGAATGCGGTATTCGAGAACTGT-AGCTGACCTTTTT--- [796] P4C2_typhina CA----TCATTGAATGCGGTATTCGAGAACTGT-AGCTGACCTTTTT--- [796] P6_typhina CA----TCATTGAATGCGGTATTCGAGAGCTGT--GCTGACCTTTTT--- [798] P7_typhina CA----TCATTGAATGCGGTATTCGAGAGCTGT--GCTGACCTTTTT--- [798] P10C2_typhina CA----TCATTGAATGCGGTATTCGAGAGCTGT--GCTGACCTTTTT--- [757] P15C2_typhina CA----TCATTGAATGCGGTATTCGAGAGCTGT--GCTGACCTTTTT--- [798] P2C1_elymi AAAAA-TTAATGATTGCGGTATTCGAGAACTGT-AGCTGACCTCTTT--- [802] P3C2_amarillans AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [798] P4C1_amarillans AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [786] P5C1_amarillans AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [786] P9C2_amarillans AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [798] P10C1_elymi AAAAA-TTAATGATTGCGGTATTCGAGAACTGT-AGCTGACCTCTTT--- [802] P12C1_amarillans AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [786] P15C1_elymi AAAAA-TTAACGATTGCGGTATTCGAGAACTGT-AGCTGACCTCTTT--- [803] AF231231_Epichloe_typhina__Pp CA----TCATTGAATGCGGTATTCGAGAACTGT-AGCTGACCTTTTT--- [799] AF231222_Epichloe_typhina__Ao CA----TTGATGAACGCGGTATTCGAAAACCGT-AGCTGAC-TTTTTT-- [801] AF231227_Epichloe_typhina__Php CA----TTGATGAATGCGGTATTCGAAAACCGT-AGCTGACCTTTTTT-- [802] AF231226_Epichloe_typhina__Php CA----TTGATGAATGCTGTATTCGAAAACCGT-AGCTGACCTTTTTTTT [811] AF231221_Epichloe_typhina__Lp CA----TTGATGAATGCGGTATTCGAAAACCGT-AGCTGACCTTTTTT-- [803] AF231223_Epichloe_typhina__Bp CA----TTAATGAATGCGGTATTCGAAAACCGT-AGCTGACCTTTTT--- [798] AF231230_Epichloe_typhina__Pn CA----TCATTGAATGCGGTATTCGAGAACTGT-AGCTGACCTTTTT--- [796] AF231228_Epichloe_typhina__Ps CA----TTGATGAATGCTGTATTCGAAAACCGT-AGCTGACCTTTTTTTT [811] HM138506_Neotyphodium_schardlii__Ca CA----TCATTGAATGCGGTATTCGAGAACTGT-AGCTGACCTTTTT--- [797] HM138507_Neotyphodium_schardlii__Ca CA----TCATTGAATGCGGTATTCGAGAACTGT-AGCTGACCTTTTT--- [796] AF231207_Epichloe_clarkii__Hl CA----TTGATGAATGCGGTATTCGAAAACCGT-AGCTGACCTTTTTT-- [801] AF231218_Epichloe_sylvatica__Bs CA----TTAATGAATGCGGTATTCGAAAACCGT-AGCTGACCTTTTT--- [800] AF231201_Epichloe_brachyelytri__Bee AA----TTCATGAATGCGGTATTCGAGAACTGT-AGCTGACCTTTTT--- [800] AF231200_Epichloe_brachyelytri__Bee AA----TTCATGAATGCGGTATTCGAGAACTGT-AGCTGACCTTTTT--- [800] AF231195_Epichloe_baconii__At AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [804] AF231193_Epichloe_baconii__As AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [803] AF231196_Epichloe_baconii__Cv AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [798] AF457504_Epichloe_amarillans__So AA----TGAACGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [818] AF457505_Epichloe_amarillans__Ah AA----TTAACGAATGCGGTATTCGAGAACTGT-AGCTGACC--GTTTT- [817] AF457506_Epichloe_amarillans__Ap AA----TTAACGAATGCGGTATTCGAGAACTGT-AGCTGACC--GTTTT- [815] AF231213_Epichloe_festucae__Fl AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [819] AF231210¬_Epichloe_festucae__Frr AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [815] AF457498_E._elymi__Ev AAAA--TTAATGATTGCGGTATTCGAGAACTGTTAGCTGACCTTTTT--- [808] AF231202_Epichloe_bromicola__Be AAAAAA-TAATGATTGCGGTATTCGAGAACTGT-AGCTGACCTTTTC--- [807] AF231217_Epichloe_glyceriae__Gs AA----TTAAAGATTGCGGTATTCGAGAACTGT-AGCTGACCTTTTT--- [808] AF231216_Epichloe_glyceriae__Gs AA----TTAAAGATTGCGGTATTCGAGAACTGT-AGCTGACCTTTTT--- [808] DQ134034_Epichloe_yangzii__Rk AAAAAAATGATGATTGCGGTATTCGAGAACTGT-AGCTGACCTTTTC--- [819] DQ134030_Epichloe_yangzii__Rk AAAAAAATGATGATTGCGGTATTCGAGAACTGT-AGCTGACCTTTTC--- [814] JQ756452_Epichloe_poae__Psj CA----TCATTGAATGCGGTATTCGAGAGCTGT-AGCTGACCTTTTT--- [799] AF457509_N_chisosum__Se AAAAAATTAATGATTGCGGTATTCGAGAACTGT-AGCTGACATTTTA--- [803] AF457508_N_chisosum__Se CA----TTAACGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [815] AF457510_N_chisosum__Se CA----TCATTGAATGCGGTATTCGAGA-CTGT-AGCTGACCTTTTTT-- [801] AF457541_N_occultans__Lrr AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [799] AF457542_N_occultans__Lrr AAAAAA-TAATGATTGCTGTATTCGAGAACTGT-AGCTGACCTTTTC--- [802] AY707673_N_tembladerae__Ph CA----TCATTGAATGCGGTATTCGAGAGCTGT-AGCTGACCTTTTT--- [800] AY707691_N_tembladerae__Ph AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [814] AY707677_N_tembladerae__Bs CA----TCATTGAATGCGGTATTCGAGAGCTGT-AGCTGACCTTTTT--- [799] AY707658_N_tembladerae__Bs AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [814] FJ190584_N_tembladerae__Ba CA----TCATTGAATGCGGTATTCGAGAGCTGT-AGCTGACCTTTTT--- [741] FJ190576_N_tembladerae__Ba AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [753] AY707675_N_tembladerae__Fh CA----TCATTGAATGCGGTATTCGAGAGCTGT-AGCTGACCTTTTT--- [800] AY707661_N_tembladerae__Fh AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [807] AF457518_Neotyphodium__Evi AA----TTAACGAATGCGGTATTCGAGAACTGT-AGCTGACC--GTTTT- [816] AF457517_Neotyphodium__Bp AAAA--TTAATGATTGCGGTATTCGAGAACTGT-AGCTGACCTTTTT--- [802] FJ190572_N_pampeanum__Ba AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [753] FJ190580_N_pampeanum__Ba CA----TCATTGAATGCGGTATTCGAGAACTGT-AGCTGACCTTTG---- [739] FJ190570_N_pampeanum__Ba AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [753] FJ190578_N_pampeanum__Ba CA----TCATTGAATGCGGTATTCGAGAACTGT-AGCTGACCTTTG---- [739] AF457513_Neotyphodium_Pau AAAA--TTAATGATTGCGGTATTCGAGAACTGTTAGCTGACCTTTTT--- [799] AF457514_Neotyphodium_Pau CA----TCATTGAATGCCGTATTCGAGAACTGT-AGCTGACCTTTTT--- [797] AF457515_Neotyphodium__Fpa CA----TCATTGAATGCGGTATTCGAGAGCTGT-AGCTGACCTTTTT--- [798] AF457516_Neotyphodium__Fpa AA----TTAATGAATGCGGTAGTCGAGAACTGT-GGCTGACCT-GTTT-- [817] AF532924_Neotyphodiun__Hbo AA----TGAACGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [816] AF532923_Neotyphodium__Hbo AAAA--TTAATGATTGCGGTATTCGAGAACTGTTAGCTGACCTTTTT--- [807] AY163833_Neotyphodium__Hbo CA----TTGATGAATGCGGTATTCGAAAACCGT-AGCTGACCTTTTTT-- [803] AF457524_Neotyphodium__Hbo AAAAAATTAATGATTGCGGTATTCGAGAACTGT-CGCTGACATTTTA--- [804] AF457534_Neotyphodium__Sro AAAA--TTAATGATTGCGGTATTCGAGAACTGTTAGCTGACCTTTTT--- [807] AF457533_Neotyphodium__Sro AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [814] AY707683_Neotyphodium__Phc CA----TCATTGAATGCGGTATTCGAGAACTGG-AGCTGACCTTTTT--- [796] AY707672_Neotyphodium__Phc AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [799] JX028260_N_coenophialum__La CA----TCATTGAATGCGGTATTCGAGAACTGT-AGCTGACCTTTTT--- [799] JX028261_N_coenophialum__La AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [814] JX028262_N_coenophialum__La AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [806] JX028266_Neotyphodium__Fa2 AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [809] JX028267_Neotyphodium__Fa2 AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [798] AF457529_Neotyphodium_Fa3 CA----TTGATGAATGCGGTATTCGAAAACCGT-AGCTGACCTTGTTT-- [806] AF457530_Neotyphodium_Fa3 AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [798] AF457532_Neotyphodium_Fa2 AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [815] AF457531_Neotyphodium_Fa2 AA----TTAATGAATGCGGTATTCGAGAACTGT-AGCTGACCT-GTTT-- [798] [ 910 920 930 940 950] [ . . . . .] P2C2_typhina CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [797] P3C1_typhina CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [836] P4C2_typhina CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [836] P6_typhina CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [838] P7_typhina CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [838] P10C2_typhina CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [797] P15C2_typhina CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [838] P2C1_elymi CTTCC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [842] P3C2_amarillans CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [848] P4C1_amarillans CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [836] P5C1_amarillans CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [836] P9C2_amarillans CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [848] P10C1_elymi CTTCC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [842] P12C1_amarillans CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [836] P15C1_elymi CTTCC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [843] AF231231_Epichloe_typhina__Pp CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [839] AF231222_Epichloe_typhina__Ao ATTTC----------CCTCTAGGTTCATCTTCAAACCGGCCAGTGCGTAA [841] AF231227_Epichloe_typhina__Php CTTTG----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [842] AF231226_Epichloe_typhina__Php CTTTG----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [851] AF231221_Epichloe_typhina__Lp CTTTG----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [843] AF231223_Epichloe_typhina__Bp CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [838] AF231230_Epichloe_typhina__Pn CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [836] AF231228_Epichloe_typhina__Ps CTTTG----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [851] HM138506_Neotyphodium_schardlii__Ca CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [837] HM138507_Neotyphodium_schardlii__Ca CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [836] AF231207_Epichloe_clarkii__Hl CTTTG----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [841] AF231218_Epichloe_sylvatica__Bs CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [840] AF231201_Epichloe_brachyelytri__Bee CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [840] AF231200_Epichloe_brachyelytri__Bee CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [840] AF231195_Epichloe_baconii__At CTTTCCCTCTTTTCTCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [854] AF231193_Epichloe_baconii__As CTTTCCCTCTTTTCACCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [853] AF231196_Epichloe_baconii__Cv CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [848] AF457504_Epichloe_amarillans__So CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [868] AF457505_Epichloe_amarillans__Ah CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [867] AF457506_Epichloe_amarillans__Ap CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [865] AF231213_Epichloe_festucae__Fl CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [869] AF231210¬_Epichloe_festucae__Frr CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [865] AF457498_E._elymi__Ev CTTCC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [848] AF231202_Epichloe_bromicola__Be CTTCC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [847] AF231217_Epichloe_glyceriae__Gs CTTCCCCTCTTCTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [858] AF231216_Epichloe_glyceriae__Gs CTTCCTCTCTTCTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [858] DQ134034_Epichloe_yangzii__Rk CTTCC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [859] DQ134030_Epichloe_yangzii__Rk CTTCC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [854] JQ756452_Epichloe_poae__Psj CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [839] AF457509_N_chisosum__Se CTTCC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [843] AF457508_N_chisosum__Se CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [865] AF457510_N_chisosum__Se CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [841] AF457541_N_occultans__Lrr CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [849] AF457542_N_occultans__Lrr CTTTT----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [842] AY707673_N_tembladerae__Ph CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [840] AY707691_N_tembladerae__Ph CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [864] AY707677_N_tembladerae__Bs CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [839] AY707658_N_tembladerae__Bs CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [864] FJ190584_N_tembladerae__Ba CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [781] FJ190576_N_tembladerae__Ba CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [803] AY707675_N_tembladerae__Fh CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [840] AY707661_N_tembladerae__Fh CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [857] AF457518_Neotyphodium__Evi CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [866] AF457517_Neotyphodium__Bp CTTCC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [842] FJ190572_N_pampeanum__Ba CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [803] FJ190580_N_pampeanum__Ba CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [779] FJ190570_N_pampeanum__Ba CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [803] FJ190578_N_pampeanum__Ba CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [779] AF457513_Neotyphodium_Pau CTTCC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [839] AF457514_Neotyphodium_Pau CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [837] AF457515_Neotyphodium__Fpa CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [838] AF457516_Neotyphodium__Fpa CTTTTCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [867] AF532924_Neotyphodiun__Hbo CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [866] AF532923_Neotyphodium__Hbo CTTCC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [847] AY163833_Neotyphodium__Hbo CTTTG----------CCTCTAGGTTCATCTTCAAACCGGCCAGTGCGTAA [843] AF457524_Neotyphodium__Hbo CTTCC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [844] AF457534_Neotyphodium__Sro CTTCC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [847] AF457533_Neotyphodium__Sro CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [864] AY707683_Neotyphodium__Phc CTTTC----------CCTCTAGGTTCATCTTCGAACCGGTCAGTGCGTAA [836] AY707672_Neotyphodium__Phc CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [849] JX028260_N_coenophialum__La CTTTC----------CCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [839] JX028261_N_coenophialum__La CTTCCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [864] JX028262_N_coenophialum__La CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [856] JX028266_Neotyphodium__Fa2 CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [859] JX028267_Neotyphodium__Fa2 CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [848] AF457529_Neotyphodium_Fa3 CTTTG----------CCTCCAGGTTCATCTTCAAACCGGTCAGTGCGTAA [846] AF457530_Neotyphodium_Fa3 CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [848] AF457532_Neotyphodium_Fa2 CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [865] AF457531_Neotyphodium_Fa2 CTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAA [848] [ 960 970 980 990 1000] [ . . . . .] P2C2_typhina GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [839] P3C1_typhina GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [878] P4C2_typhina GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [878] P6_typhina GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [880] P7_typhina GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [880] P10C2_typhina GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [839] P15C2_typhina GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [880] P2C1_elymi GTG--ACAAATCCGCCGACCTAGAACGACA----GGCACAAATAACA--T [884] P3C2_amarillans GTG--ACAAATCCGCCGACCTCGAACGAC----GGGCACAAACAGCA--T [890] P4C1_amarillans GTG--ACAAATCCGCCGACCTCGAACGAC----GGGCACAAACAGCA--T [878] P5C1_amarillans GTG--ACAAATCCGCCGACCTCGAACGAC----GGGCACAAACAGCA--T [878] P9C2_amarillans GTG--ACAAATCCGCCGACCTCGAACGAC----GGGCACAAACAGCA--T [890] P10C1_elymi GTG--ACAAATCCGCCGACCTAGAACGACA----GGCACAAATAACA--T [884] P12C1_amarillans GTG--ACAAATCCGCCGACCTCGAACGAC----GGGCACAAACAGCA--T [878] P15C1_elymi TTG--ACAAATCCGCCGACCTAGAACGACA----GGCACAAATAACA--T [885] AF231231_Epichloe_typhina__Pp GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAATAACA--T [881] AF231222_Epichloe_typhina__Ao GTG--ACAAATCCGCCGACCTCGAACGACAA---GGCACAGATAACA--T [884] AF231227_Epichloe_typhina__Php GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAATAACA--T [884] AF231226_Epichloe_typhina__Php GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAATAACA--T [893] AF231221_Epichloe_typhina__Lp GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAATAACA--T [885] AF231223_Epichloe_typhina__Bp GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAATAACA--T [880] AF231230_Epichloe_typhina__Pn GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [878] AF231228_Epichloe_typhina__Ps GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAATAACA--T [893] HM138506_Neotyphodium_schardlii__Ca GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAATAACA--T [879] HM138507_Neotyphodium_schardlii__Ca GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [878] AF231207_Epichloe_clarkii__Hl GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAATAACA--T [883] AF231218_Epichloe_sylvatica__Bs GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAATAACA--T [882] AF231201_Epichloe_brachyelytri__Bee GTG--ACAAATCCGCCGACCTCGGACGACA----GGCACAAATAACA--T [882] AF231200_Epichloe_brachyelytri__Bee GTG--ACAAATCCGCCGACCTCGGACGACA----GGCACAAATAACA--T [882] AF231195_Epichloe_baconii__At GTG--ACAAAT-CGCCGACCTCGAACGACA----GGCACAAACAGCA--T [895] AF231193_Epichloe_baconii__As GTG--ACAAAT-CGCCGACCTCGAACGACA----GGCACAAACAGCA--T [894] AF231196_Epichloe_baconii__Cv GTG--ACAAATCCGCCGACCTCAAACGAC----GGGCACAAACAGCA--T [890] AF457504_Epichloe_amarillans__So GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [910] AF457505_Epichloe_amarillans__Ah GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAACAACA--T [909] AF457506_Epichloe_amarillans__Ap GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAACAACA--T [907] AF231213_Epichloe_festucae__Fl GTG--ACAAATTCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [911] AF231210¬_Epichloe_festucae__Frr GTG--ACAAATTCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [907] AF457498_E._elymi__Ev GTG--ACAAATCCGCCGACCTAGAACGAC----GGGCACAAATAACA--T [890] AF231202_Epichloe_bromicola__Be GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAATAACACAT [891] AF231217_Epichloe_glyceriae__Gs GTG--ACAAATTCGCCGACCTCGAGCGACA----GGCACCAATAACA--T [900] AF231216_Epichloe_glyceriae__Gs GTG--ACAAATTCGCCGACCTCGAGCGACA----GGCACCAATAACA--T [900] DQ134034_Epichloe_yangzii__Rk GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAACAACACAT [903] DQ134030_Epichloe_yangzii__Rk GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAACAACACAT [898] JQ756452_Epichloe_poae__Psj GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [881] AF457509_N_chisosum__Se GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAATAACA--T [885] AF457508_N_chisosum__Se GTG--ACAAATCCGCCGACCTCGAACGACAGACAGGCACAAACAGCA--T [911] AF457510_N_chisosum__Se GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAATAACA--T [883] AF457541_N_occultans__Lrr GTG--ACAAAT-CGCCGACCTCGAACAACA----GGCACAAACAGCA--T [890] AF457542_N_occultans__Lrr GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAACAACACAT [886] AY707673_N_tembladerae__Ph GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [882] AY707691_N_tembladerae__Ph GTG--ACAAATTCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [906] AY707677_N_tembladerae__Bs GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [881] AY707658_N_tembladerae__Bs GTG--ACAAATTCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [906] FJ190584_N_tembladerae__Ba GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [823] FJ190576_N_tembladerae__Ba GTG--ACAAATTCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [845] AY707675_N_tembladerae__Fh GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [882] AY707661_N_tembladerae__Fh GTG--ACAAATTCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [899] AF457518_Neotyphodium__Evi GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAACAACA--T [908] AF457517_Neotyphodium__Bp GTG--ACAAATCCGCCGACCTAGAACGAC----GGGCACAAATAACA--T [884] FJ190572_N_pampeanum__Ba GTG--ACAAATTCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [845] FJ190580_N_pampeanum__Ba GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [821] FJ190570_N_pampeanum__Ba GTG--ACAAATTCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [845] FJ190578_N_pampeanum__Ba GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [821] AF457513_Neotyphodium_Pau GTG--ACAAATCCGCCGACCTAGAACGAC----GGGCACAAATAACA--T [881] AF457514_Neotyphodium_Pau GTG--ACAAATCTGCCGACCTCGA-CGACA----GGCACAAATAACA--T [878] AF457515_Neotyphodium__Fpa GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [880] AF457516_Neotyphodium__Fpa GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [909] AF532924_Neotyphodiun__Hbo GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [908] AF532923_Neotyphodium__Hbo GTG--ACAAATCCGCCGACCTAGAACGAC----GGGCACAAATAACA--T [889] AY163833_Neotyphodium__Hbo GTG--AAAAATCCGCCGACCTCGAACGACA----GGCACAGATAACA--T [885] AF457524_Neotyphodium__Hbo GTGTGACAAATCCGCCGACCTCGAACGACA----GGCACAAATAACA--T [888] AF457534_Neotyphodium__Sro GTG--ACAAATCCGCCGACCTAGAACGAC----GGGCACAAATAACA--T [889] AF457533_Neotyphodium__Sro GTG--ACAAATTCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [906] AY707683_Neotyphodium__Phc GTG--ACAAATCTGCCGACCTCGAACGACA---GGGCACAAATAACA--T [879] AY707672_Neotyphodium__Phc GTG--ACAAATCCGCCGACCTCGAACGAC----GGGCACAAACAGCA--T [891] JX028260_N_coenophialum__La GTG--ACAAATCTGCCGACCTCGAACGACA----GGCACAAATAACA--T [881] JX028261_N_coenophialum__La GTG--ACAAATTCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [906] JX028262_N_coenophialum__La GTG--ACAAAT-CGCCGACCTCGAACGACA----GGCACAAACAGCA--T [897] JX028266_Neotyphodium__Fa2 GTG--ACAAATTCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [901] JX028267_Neotyphodium__Fa2 GTG--ACAAAT-CGCCGACCTCGAACGACA----GGCACAAACAGCA--T [889] AF457529_Neotyphodium_Fa3 GTG--ACAAATCCGCCGACCTCGAACGACA----GGCACAAATAACA--T [888] AF457530_Neotyphodium_Fa3 GTG--ACAAAT-CGCCGACCTCGAACGACA----GGCACAAACAGCA--T [889] AF457532_Neotyphodium_Fa2 GTG--ACAAATTCGCCGACCTCGAACGACA----GGCACAAACAGCA--T [907] AF457531_Neotyphodium_Fa2 GTG--ACAAAT-CGCCGACCTCGAACGACAA---GGCACAAACAGCA--T [890] [ 1010 1020 1030 1040 1050] [ . . . . .] P2C2_typhina GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [888] P3C1_typhina GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [927] P4C2_typhina GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [927] P6_typhina GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [929] P7_typhina GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [929] P10C2_typhina GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [888] P15C2_typhina GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [929] P2C1_elymi GAATAA-CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [933] P3C2_amarillans GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [939] P4C1_amarillans GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [927] P5C1_amarillans GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [927] P9C2_amarillans GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [939] P10C1_elymi GAATAA-CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [933] P12C1_amarillans GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [927] P15C1_elymi GAATAA-CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [934] AF231231_Epichloe_typhina__Pp GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [930] AF231222_Epichloe_typhina__Ao GAAAAA-CTCACATTGACTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [933] AF231227_Epichloe_typhina__Php GAAAAAACTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [934] AF231226_Epichloe_typhina__Php GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [942] AF231221_Epichloe_typhina__Lp GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [934] AF231223_Epichloe_typhina__Bp GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [929] AF231230_Epichloe_typhina__Pn GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [927] AF231228_Epichloe_typhina__Ps GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [942] HM138506_Neotyphodium_schardlii__Ca GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [928] HM138507_Neotyphodium_schardlii__Ca GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [927] AF231207_Epichloe_clarkii__Hl GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [932] AF231218_Epichloe_sylvatica__Bs GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [931] AF231201_Epichloe_brachyelytri__Bee GAAAAA-CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [931] AF231200_Epichloe_brachyelytri__Bee GAAAAA-CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [931] AF231195_Epichloe_baconii__At GAAAAA-CTCACATTCTTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [944] AF231193_Epichloe_baconii__As GAAAAA-CTCACATTCTTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [943] AF231196_Epichloe_baconii__Cv GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [939] AF457504_Epichloe_amarillans__So GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [959] AF457505_Epichloe_amarillans__Ah GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [958] AF457506_Epichloe_amarillans__Ap GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [956] AF231213_Epichloe_festucae__Fl GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [960] AF231210¬_Epichloe_festucae__Frr GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [956] AF457498_E._elymi__Ev GAAAAA-CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [939] AF231202_Epichloe_bromicola__Be GGAAAA-CTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [940] AF231217_Epichloe_glyceriae__Gs GAAAAA-CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [949] AF231216_Epichloe_glyceriae__Gs GAAAAA-CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [949] DQ134034_Epichloe_yangzii__Rk GAAAAA-CTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [952] DQ134030_Epichloe_yangzii__Rk GAAAAA-CTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [947] JQ756452_Epichloe_poae__Psj GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [930] AF457509_N_chisosum__Se GAAAAA-CTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [934] AF457508_N_chisosum__Se GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [960] AF457510_N_chisosum__Se GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [932] AF457541_N_occultans__Lrr GAAAAATCTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [940] AF457542_N_occultans__Lrr GAAAAA-CTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [935] AY707673_N_tembladerae__Ph GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [931] AY707691_N_tembladerae__Ph GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [955] AY707677_N_tembladerae__Bs GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [930] AY707658_N_tembladerae__Bs GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [955] FJ190584_N_tembladerae__Ba GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [872] FJ190576_N_tembladerae__Ba GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [894] AY707675_N_tembladerae__Fh GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [931] AY707661_N_tembladerae__Fh GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [948] AF457518_Neotyphodium__Evi GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [957] AF457517_Neotyphodium__Bp GAAAAA-CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [933] FJ190572_N_pampeanum__Ba GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [894] FJ190580_N_pampeanum__Ba GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [870] FJ190570_N_pampeanum__Ba GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [894] FJ190578_N_pampeanum__Ba GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [870] AF457513_Neotyphodium_Pau GAAAAA-CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [930] AF457514_Neotyphodium_Pau GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [927] AF457515_Neotyphodium__Fpa GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [929] AF457516_Neotyphodium__Fpa GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGCGCTGCTTTC [958] AF532924_Neotyphodiun__Hbo GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [957] AF532923_Neotyphodium__Hbo GAAAAA-CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [938] AY163833_Neotyphodium__Hbo GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [934] AF457524_Neotyphodium__Hbo GAAAAA-CTCACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [937] AF457534_Neotyphodium__Sro GAAAAA-CTCACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [938] AF457533_Neotyphodium__Sro GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [955] AY707683_Neotyphodium__Phc GAAAAA-CTCACATTGATTTGGGCAGGGTAACGAAATTGGTGCTGCTTTC [928] AY707672_Neotyphodium__Phc GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [940] JX028260_N_coenophialum__La GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [930] JX028261_N_coenophialum__La GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [955] JX028262_N_coenophialum__La GAAAAAACTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [947] JX028266_Neotyphodium__Fa2 GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [950] JX028267_Neotyphodium__Fa2 GAAAAAACTCACATTCATCTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [939] AF457529_Neotyphodium_Fa3 GAAAAA-CTCACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [937] AF457530_Neotyphodium_Fa3 GAAAAAACTCACATTCATCTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [939] AF457532_Neotyphodium_Fa2 GAAAAA-CTCACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [956] AF457531_Neotyphodium_Fa2 GAAAAAACTCACATTCATCTGGGCAGGGTAACCAAATTGGTGCTGCTTTC [940] [ 1060 1070 1080 1090 1100] [ . . . . .] P2C2_typhina TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [938] P3C1_typhina TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [977] P4C2_typhina TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [977] P6_typhina TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [979] P7_typhina TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [979] P10C2_typhina TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [938] P15C2_typhina TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [979] P2C1_elymi TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [983] P3C2_amarillans TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [989] P4C1_amarillans TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [977] P5C1_amarillans TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [977] P9C2_amarillans TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [989] P10C1_elymi TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [983] P12C1_amarillans TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [977] P15C1_elymi TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [984] AF231231_Epichloe_typhina__Pp TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [980] AF231222_Epichloe_typhina__Ao TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [983] AF231227_Epichloe_typhina__Php TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [984] AF231226_Epichloe_typhina__Php TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [992] AF231221_Epichloe_typhina__Lp TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [984] AF231223_Epichloe_typhina__Bp TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [979] AF231230_Epichloe_typhina__Pn TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [977] AF231228_Epichloe_typhina__Ps TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [992] HM138506_Neotyphodium_schardlii__Ca TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [978] HM138507_Neotyphodium_schardlii__Ca TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [977] AF231207_Epichloe_clarkii__Hl TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [982] AF231218_Epichloe_sylvatica__Bs TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [981] AF231201_Epichloe_brachyelytri__Bee TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [981] AF231200_Epichloe_brachyelytri__Bee TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [981] AF231195_Epichloe_baconii__At TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [994] AF231193_Epichloe_baconii__As TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [993] AF231196_Epichloe_baconii__Cv TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [989] AF457504_Epichloe_amarillans__So TGGCAGACCATATCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1009] AF457505_Epichloe_amarillans__Ah TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1008] AF457506_Epichloe_amarillans__Ap TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1006] AF231213_Epichloe_festucae__Fl TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1010] AF231210¬_Epichloe_festucae__Frr TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1006] AF457498_E._elymi__Ev TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [989] AF231202_Epichloe_bromicola__Be TGGCAGACCATCTCTTGCGAGCACGGTCTCGACAGCAATGGTGTGTACAA [990] AF231217_Epichloe_glyceriae__Gs TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [999] AF231216_Epichloe_glyceriae__Gs TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [999] DQ134034_Epichloe_yangzii__Rk TGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAA [1002] DQ134030_Epichloe_yangzii__Rk TGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAA [997] JQ756452_Epichloe_poae__Psj TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [980] AF457509_N_chisosum__Se TGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAA [984] AF457508_N_chisosum__Se TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1010] AF457510_N_chisosum__Se TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [982] AF457541_N_occultans__Lrr TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [990] AF457542_N_occultans__Lrr TGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAA [985] AY707673_N_tembladerae__Ph TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [981] AY707691_N_tembladerae__Ph TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1005] AY707677_N_tembladerae__Bs TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [980] AY707658_N_tembladerae__Bs TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1005] FJ190584_N_tembladerae__Ba TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [922] FJ190576_N_tembladerae__Ba TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [944] AY707675_N_tembladerae__Fh TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [981] AY707661_N_tembladerae__Fh TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [998] AF457518_Neotyphodium__Evi TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1007] AF457517_Neotyphodium__Bp TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [983] FJ190572_N_pampeanum__Ba TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [944] FJ190580_N_pampeanum__Ba TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATG-TGTGTACAA [919] FJ190570_N_pampeanum__Ba TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [944] FJ190578_N_pampeanum__Ba TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATG-TGTGTACAA [919] AF457513_Neotyphodium_Pau TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [980] AF457514_Neotyphodium_Pau TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [977] AF457515_Neotyphodium__Fpa TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [979] AF457516_Neotyphodium__Fpa TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1008] AF532924_Neotyphodiun__Hbo TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1007] AF532923_Neotyphodium__Hbo TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [988] AY163833_Neotyphodium__Hbo TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [984] AF457524_Neotyphodium__Hbo TGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAA [987] AF457534_Neotyphodium__Sro TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [988] AF457533_Neotyphodium__Sro TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1005] AY707683_Neotyphodium__Phc TGGCAGACCATCTCTGGCGAGCACGGCCTCGAGAGCAATGGTGTGTACAA [978] AY707672_Neotyphodium__Phc TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [990] JX028260_N_coenophialum__La TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [980] JX028261_N_coenophialum__La TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1005] JX028262_N_coenophialum__La TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [997] JX028266_Neotyphodium__Fa2 TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1000] JX028267_Neotyphodium__Fa2 TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [989] AF457529_Neotyphodium_Fa3 TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [987] AF457530_Neotyphodium_Fa3 TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [989] AF457532_Neotyphodium_Fa2 TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [1006] AF457531_Neotyphodium_Fa2 TGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAA [990] [ 1110 1120 1130 1140 1150] [ . . . . .] P2C2_typhina TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [988] P3C1_typhina TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1027] P4C2_typhina TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1027] P6_typhina TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1029] P7_typhina TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1029] P10C2_typhina TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [988] P15C2_typhina TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1029] P2C1_elymi TGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGG [1033] P3C2_amarillans TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1039] P4C1_amarillans TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1027] P5C1_amarillans TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1027] P9C2_amarillans TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1039] P10C1_elymi TGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGG [1033] P12C1_amarillans TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1027] P15C1_elymi TGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGG [1034] AF231231_Epichloe_typhina__Pp TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1030] AF231222_Epichloe_typhina__Ao TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1033] AF231227_Epichloe_typhina__Php TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1034] AF231226_Epichloe_typhina__Php TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1042] AF231221_Epichloe_typhina__Lp TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1034] AF231223_Epichloe_typhina__Bp TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1029] AF231230_Epichloe_typhina__Pn TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1027] AF231228_Epichloe_typhina__Ps TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1042] HM138506_Neotyphodium_schardlii__Ca TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1028] HM138507_Neotyphodium_schardlii__Ca TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1027] AF231207_Epichloe_clarkii__Hl TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1032] AF231218_Epichloe_sylvatica__Bs TGGTACCTCGGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGG [1031] AF231201_Epichloe_brachyelytri__Bee TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1031] AF231200_Epichloe_brachyelytri__Bee TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1031] AF231195_Epichloe_baconii__At TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1044] AF231193_Epichloe_baconii__As TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1043] AF231196_Epichloe_baconii__Cv TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1039] AF457504_Epichloe_amarillans__So TGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGG [1059] AF457505_Epichloe_amarillans__Ah TGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGG [1058] AF457506_Epichloe_amarillans__Ap TGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGG [1056] AF231213_Epichloe_festucae__Fl TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1060] AF231210¬_Epichloe_festucae__Frr TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1056] AF457498_E._elymi__Ev TGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGG [1039] AF231202_Epichloe_bromicola__Be CGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGG [1040] AF231217_Epichloe_glyceriae__Gs TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1049] AF231216_Epichloe_glyceriae__Gs TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1049] DQ134034_Epichloe_yangzii__Rk CGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGG [1052] DQ134030_Epichloe_yangzii__Rk CGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGG [1047] JQ756452_Epichloe_poae__Psj TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1030] AF457509_N_chisosum__Se CGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGG [1034] AF457508_N_chisosum__Se TGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGG [1060] AF457510_N_chisosum__Se TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1032] AF457541_N_occultans__Lrr TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1040] AF457542_N_occultans__Lrr CGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGG [1035] AY707673_N_tembladerae__Ph TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1031] AY707691_N_tembladerae__Ph TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1055] AY707677_N_tembladerae__Bs TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1030] AY707658_N_tembladerae__Bs TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1055] FJ190584_N_tembladerae__Ba TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [972] FJ190576_N_tembladerae__Ba TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [994] AY707675_N_tembladerae__Fh TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1031] AY707661_N_tembladerae__Fh TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1048] AF457518_Neotyphodium__Evi TGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGG [1057] AF457517_Neotyphodium__Bp TGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGG [1033] FJ190572_N_pampeanum__Ba TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [994] FJ190580_N_pampeanum__Ba TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [969] FJ190570_N_pampeanum__Ba TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [994] FJ190578_N_pampeanum__Ba TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [969] AF457513_Neotyphodium_Pau TGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGG [1030] AF457514_Neotyphodium_Pau TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1027] AF457515_Neotyphodium__Fpa TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1029] AF457516_Neotyphodium__Fpa TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1058] AF532924_Neotyphodiun__Hbo TGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGG [1057] AF532923_Neotyphodium__Hbo TGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGG [1038] AY163833_Neotyphodium__Hbo TGGTACCTTCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1034] AF457524_Neotyphodium__Hbo CGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGG [1037] AF457534_Neotyphodium__Sro TGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTTAACGAGG [1038] AF457533_Neotyphodium__Sro TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1055] AY707683_Neotyphodium__Phc TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1028] AY707672_Neotyphodium__Phc TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1040] JX028260_N_coenophialum__La TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1030] JX028261_N_coenophialum__La TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1055] JX028262_N_coenophialum__La TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1047] JX028266_Neotyphodium__Fa2 TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1050] JX028267_Neotyphodium__Fa2 TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1039] AF457529_Neotyphodium_Fa3 TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1037] AF457530_Neotyphodium_Fa3 TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1039] AF457532_Neotyphodium_Fa2 TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1056] AF457531_Neotyphodium_Fa2 TGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGG [1040] [ 1160 1170 1180 1190 1200] [ . . . . .] P2C2_typhina CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1015] P3C1_typhina CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1054] P4C2_typhina CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1054] P6_typhina CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1056] P7_typhina CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1056] P10C2_typhina CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1015] P15C2_typhina CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1056] P2C1_elymi TAAGTCTTCATAATCT-C-AA-GTCTCCATTGAGC----TACATACCGCC [1076] P3C2_amarillans TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1086] P4C1_amarillans TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1074] P5C1_amarillans TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1074] P9C2_amarillans TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1086] P10C1_elymi TAAGTCTTCATAATCT-C-AA-GTCTCCATTGAGC----TACATACCGCC [1076] P12C1_amarillans TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1074] P15C1_elymi TAAGTCTTCATAATCT-C-AA-GTCTCCATTGAGC----TACATACCGCC [1077] AF231231_Epichloe_typhina__Pp CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1057] AF231222_Epichloe_typhina__Ao CAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGC----TACATACCGCC [1079] AF231227_Epichloe_typhina__Php CAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGC----TACATACCGCC [1080] AF231226_Epichloe_typhina__Php CAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGC----TACATACCGCC [1088] AF231221_Epichloe_typhina__Lp CAAGTCTTCATAATCTACAAAAGTCTCCATTGAGC----TACATACTGCC [1080] AF231223_Epichloe_typhina__Bp CAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TACATACCGCC [1072] AF231230_Epichloe_typhina__Pn CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1054] AF231228_Epichloe_typhina__Ps CAAGTCTTCATAATCTAAAAAAGTCCCCATTGAGC----TACATACCGCC [1088] HM138506_Neotyphodium_schardlii__Ca CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1055] HM138507_Neotyphodium_schardlii__Ca CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1054] AF231207_Epichloe_clarkii__Hl CAAGTCTTCATAATCTACAAAAGTCTCCATTGAGC----TACATACTGCC [1078] AF231218_Epichloe_sylvatica__Bs CAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TACATACCGCC [1074] AF231201_Epichloe_brachyelytri__Bee TAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TACATACCGCC [1074] AF231200_Epichloe_brachyelytri__Bee TAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TACACACCGCC [1074] AF231195_Epichloe_baconii__At TAAGTCTTCATAATCT---AAAGTCTCCGTTGAGCTACATACATACCGCC [1091] AF231193_Epichloe_baconii__As TAAGTCTTCATAATCT---AAAGTCTCCGTTGAGCTACATACATACCGCC [1090] AF231196_Epichloe_baconii__Cv TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1086] AF457504_Epichloe_amarillans__So TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1106] AF457505_Epichloe_amarillans__Ah TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1105] AF457506_Epichloe_amarillans__Ap TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1103] AF231213_Epichloe_festucae__Fl TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1107] AF231210¬_Epichloe_festucae__Frr TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1103] AF457498_E._elymi__Ev TAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TACATACCGCC [1082] AF231202_Epichloe_bromicola__Be TAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TGCATACCGCC [1083] AF231217_Epichloe_glyceriae__Gs TAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TATATACCGCC [1092] AF231216_Epichloe_glyceriae__Gs TAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TATATACCGCC [1092] DQ134034_Epichloe_yangzii__Rk TAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TACATACCGCC [1095] DQ134030_Epichloe_yangzii__Rk TAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TACATACCGCC [1090] JQ756452_Epichloe_poae__Psj CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1057] AF457509_N_chisosum__Se TAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TACATACCGCC [1077] AF457508_N_chisosum__Se TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1107] AF457510_N_chisosum__Se CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1059] AF457541_N_occultans__Lrr TAAGTCTTCATAATCT---AAAGTCTCCGTTGAGCTACATACATACCGCC [1087] AF457542_N_occultans__Lrr TAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TACATACCGCC [1078] AY707673_N_tembladerae__Ph CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1058] AY707691_N_tembladerae__Ph TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1102] AY707677_N_tembladerae__Bs CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1057] AY707658_N_tembladerae__Bs TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1102] FJ190584_N_tembladerae__Ba CAAGTCT-------------------CCATTGAGC----TACATACCGCC [999] FJ190576_N_tembladerae__Ba TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1041] AY707675_N_tembladerae__Fh CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1058] AY707661_N_tembladerae__Fh TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1095] AF457518_Neotyphodium__Evi TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1104] AF457517_Neotyphodium__Bp TAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TACATACCGCC [1076] FJ190572_N_pampeanum__Ba TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1041] FJ190580_N_pampeanum__Ba CAAGTCT-------------------CCATTGAGC----TACATACCGCC [996] FJ190570_N_pampeanum__Ba TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1041] FJ190578_N_pampeanum__Ba CAAGTCT-------------------CCATTGAGC----TACATACCGCC [996] AF457513_Neotyphodium_Pau TAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TACATACCGCC [1073] AF457514_Neotyphodium_Pau CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1054] AF457515_Neotyphodium__Fpa CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1056] AF457516_Neotyphodium__Fpa TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1105] AF532924_Neotyphodiun__Hbo TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1104] AF532923_Neotyphodium__Hbo TAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TACATACCGCC [1081] AY163833_Neotyphodium__Hbo CAAGTCTTCATAATCTAAAAAAGTCTCCATTGAGC----TACATACCGCC [1080] AF457524_Neotyphodium__Hbo TAAGTCTTCATAATTT---AAAGTCTCCATTGAGC----TACATACCGCC [1080] AF457534_Neotyphodium__Sro TAAGTCTTCATAATCT---AAAGTCTCCATTGAGC----TACATACCGCC [1081] AF457533_Neotyphodium__Sro TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1102] AY707683_Neotyphodium__Phc CAAGTCT-------------------CCATTGGGC----TACATACCGCC [1055] AY707672_Neotyphodium__Phc TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1087] JX028260_N_coenophialum__La CAAGTCT-------------------CCATTGAGC----TACATACCGCC [1057] JX028261_N_coenophialum__La TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1102] JX028262_N_coenophialum__La TAAGTCTTCATAATCT---AAAGTCTCCGTTGAGCTACATACATACCGCC [1094] JX028266_Neotyphodium__Fa2 TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1097] JX028267_Neotyphodium__Fa2 TAAGTCTTCATAATCT---AAAGTCTCCGTTGAGCTATATACATACCGCC [1086] AF457529_Neotyphodium_Fa3 CAAGTCTTCATAACCTAAAAAAGTCCCCATTGAGC----TACATACCGCC [1083] AF457530_Neotyphodium_Fa3 TAAGTCTTCATAATCT---AAAGTCTCCGTTGAGCTATATACATACCGCC [1086] AF457532_Neotyphodium_Fa2 TAAGTCTTCATAATCT---AAAGTCTCCATTGAGCTACATACATACCGCC [1103] AF457531_Neotyphodium_Fa2 TAAGTCTTCATAATCT---AAAGTCTCCGTTGAGCTATATACATACCGCC [1087] [ 1210 1220 1230 1240 1250] [ . . . . .] P2C2_typhina C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1059] P3C1_typhina C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1098] P4C2_typhina C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1098] P6_typhina C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1100] P7_typhina C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1100] P10C2_typhina C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1059] P15C2_typhina C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1100] P2C1_elymi C-TGGGGATGAGA---CGGAAAGAGAACGCAAGAAAAAGTGTCATCA--T [1120] P3C2_amarillans C-CGGAGATGAGA---CGGGAAGAGAACGAAAGAAAAAGTGTTATCA--T [1130] P4C1_amarillans C-CGGAGATGAGA---CGGGAAGAGAACGAAAGAAAAAGTGTTATCA--T [1118] P5C1_amarillans C-CGGAGATGAGA---CGGGAAGAGAACGAAAGAAAAAGTGTTATCA--T [1118] P9C2_amarillans C-CGGAGATGAGA---CGGGAAGAGAACGAAAGAAAAAGTGTTATCA--T [1130] P10C1_elymi C-TGGGGATGAGA---CGGAAAGAGAACGCAAGAAAAAGTGTCATCA--T [1120] P12C1_amarillans C-CGGAGATGAGA---CGGGAAGAGAACGAAAGAAAAAGTGTTATCA--T [1118] P15C1_elymi C-TGGGGATGAGA---CGGAAAGAGAACGCAAGAAAAAGTGTCATCA--T [1121] AF231231_Epichloe_typhina__Pp C-TGGAGATGAGA---CGGAAAGAGAAGGAAAGAAAAAGTGTTATCA--T [1101] AF231222_Epichloe_typhina__Ao C-TGGAGATGGGA---CGGGAAAAGAAGCGAAGAAAAAGTATTATCA--T [1123] AF231227_Epichloe_typhina__Php CCTGGAGACGGGA---CGGGAAAAGAAGCGAAGAAAAAGTATTATCA--T [1125] AF231226_Epichloe_typhina__Php C-TGGAGATTGGA---CAGGAAAAGATGGAAAGAAAAAGTGCCATCA--T [1132] AF231221_Epichloe_typhina__Lp C-TGGAGATGGGG---CGGGAGAAGATGGAAAGGAAAAGTGTTATCA--T [1124] AF231223_Epichloe_typhina__Bp C-TGGAGATGGGA---CGGAAAAAGAGGGAAAGAAAAAGTGTTATCA--T [1116] AF231230_Epichloe_typhina__Pn C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1098] AF231228_Epichloe_typhina__Ps C-TGGAGATTGGA---CAGGAAAAGATGGAAAGAAAAAGTGCCATCA--T [1132] HM138506_Neotyphodium_schardlii__Ca C-TGGAGATGAGA---CGGAAAGAGAAGGAAAGAAAAAGTGTTATCA--T [1099] HM138507_Neotyphodium_schardlii__Ca C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1098] AF231207_Epichloe_clarkii__Hl C-TGGAGATGGGG---CGGGAGAAGATGGAAAGGAAAAGTGTTATCA--T [1122] AF231218_Epichloe_sylvatica__Bs C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1118] AF231201_Epichloe_brachyelytri__Bee C-TGGAGATGAGA---CGGAAAGAGAAGGAAAGAAAAAGTGTCATCA--T [1118] AF231200_Epichloe_brachyelytri__Bee C-TGGAGATGAGA---CGGAAAGAGAAGGAAAGAAAAAGTGTCATCA--T [1118] AF231195_Epichloe_baconii__At C-CGGAGATGAGA---CGGAAAAAGAACGAAAGAAAAAGTGCTATCA--T [1135] AF231193_Epichloe_baconii__As C-CGGAGATGAGA---CGGAAAAAGAACGAAAGAAAAAGTGCTATCA--T [1134] AF231196_Epichloe_baconii__Cv C-CGGAGATGAGA---CGGGAAGAGAACGAAAGAAAAAGTGTTATCA--T [1130] AF457504_Epichloe_amarillans__So C-CGGAGATGAGA---CGGAAAGAGAACGAGAGAAAAAGTGTCATCA--T [1150] AF457505_Epichloe_amarillans__Ah C-CGGAGATGAGA---CGGAAAGAGAACGAGAGAAAAAGTGTCATCA--T [1149] AF457506_Epichloe_amarillans__Ap C-CGGAGATGAGA---CGGAAAGAGAACGAGAGAAAAAGTGTCATCA--T [1147] AF231213_Epichloe_festucae__Fl C-CGGAGATGGGA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1151] AF231210¬_Epichloe_festucae__Frr C-CGGAGATGGGA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1147] AF457498_E._elymi__Ev C-TGGAGATGAGA---CGGAAAGAGAACGAAAGAAAAAGTGTCATCATAT [1128] AF231202_Epichloe_bromicola__Be C-TGGAGATGAGA---CGGAAAGAGAACG--ATAAAAAGTGTTAACA--T [1125] AF231217_Epichloe_glyceriae__Gs C-TGGAGATGAGA---CGGAAAGAGAACGAAAGAAAAAGTGTCATAA--T [1136] AF231216_Epichloe_glyceriae__Gs C-TGGAGATGAGA---CGGAAAGAGAACGAAAGAAAAAGTGTCATAA--T [1136] DQ134034_Epichloe_yangzii__Rk C-TGGAGATGAGATTTCGGAAAGGGAACG--ATAAAAAGTGTTAACA--T [1140] DQ134030_Epichloe_yangzii__Rk C-TGGAGATGAGATTTCGGAAAGAGAACG--ATAAAAAGTGTTAACA--T [1135] JQ756452_Epichloe_poae__Psj C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1101] AF457509_N_chisosum__Se C-TGGAGATTAGA---CGGAAAGAGAACG--ATGAAAAGTGTTAACA--T [1119] AF457508_N_chisosum__Se C-CGGAGATGAGA---CGGAAAGAGAACGAGAGAAAAAGTGTCATCA--T [1151] AF457510_N_chisosum__Se C-TGGAGATGAGA---CGGAAAGAGAAGGAAAGAAAAAGTGTTATCA--T [1103] AF457541_N_occultans__Lrr C-CGGAGATGAAA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1131] AF457542_N_occultans__Lrr C-TGGAGATGAGA---CGGAAAGAGATCG--ATAAAAAGTGTGAACA--T [1120] AY707673_N_tembladerae__Ph C-TGGAGA------------------------------------------ [1065] AY707691_N_tembladerae__Ph C-CGGAGATGGGA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1146] AY707677_N_tembladerae__Bs C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGGTTTATCA--T [1101] AY707658_N_tembladerae__Bs C-CGGAGATGGGA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1146] FJ190584_N_tembladerae__Ba C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGGTTTATCA--T [1043] FJ190576_N_tembladerae__Ba C-CGGAGATGGGA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1085] AY707675_N_tembladerae__Fh C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGGTTTATCA--T [1102] AY707661_N_tembladerae__Fh C-CGGAGATGGGA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1139] AF457518_Neotyphodium__Evi C-CGGAGATGAGA---CGGAAAGAGAACGAGAGAAAAAGTGTCATCA--T [1148] AF457517_Neotyphodium__Bp C-TGGAGATGAGA---CGGAAAGAGAACGAAAGAAAAAGTGTCATCATAT [1122] FJ190572_N_pampeanum__Ba C-CGGAGATGGGA---CGGAAAGAGAACGAAAGA---------------- [1071] FJ190580_N_pampeanum__Ba C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1040] FJ190570_N_pampeanum__Ba C-CGGAGATGGGA---CGGAAAGAGAACGAAAGA---------------- [1071] FJ190578_N_pampeanum__Ba C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1040] AF457513_Neotyphodium_Pau C-TGGAGATGAGA---CGGAAAGAGAACGAAAGAAAAAGTGTCATCATAT [1119] AF457514_Neotyphodium_Pau C-TGGAGATGGGA---CGGAAAAAGTAGGAAAGAAAAAGTGTTATCA--T [1098] AF457515_Neotyphodium__Fpa C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1100] AF457516_Neotyphodium__Fpa C-CGGAGATGAGA---CGGAAAGAGAACGAGAGAAAAAGTGTTATCA-AT [1150] AF532924_Neotyphodiun__Hbo C-CGGAGATGAGA---CGGAAAGAGAACGAGAGAAAAAGTGTCATCA--T [1148] AF532923_Neotyphodium__Hbo C-TGGAGATGAGA---CGGAAAGAGAACGAAAGAAAAAGTGTCATCATAT [1127] AY163833_Neotyphodium__Hbo C-TGGAGATGGGA---CGGGAAAAGAAGCGGAGAAAAAGTATTATCA--T [1124] AF457524_Neotyphodium__Hbo C-TGGAGATGAGA---CGGAAAGAGAACG--ATGAAAAGTGTTAACA--T [1122] AF457534_Neotyphodium__Sro C-TGGAGATGAGA---CGGAAAGAGAACGAAAGAAAAAGTGTCATCATAT [1127] AF457533_Neotyphodium__Sro C-CGGAGATGGGA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1146] AY707683_Neotyphodium__Phc C-TGGAGATGGGA---CG-AAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1098] AY707672_Neotyphodium__Phc C-CGGAGATGAGA---CGGGAAGAGAACGAAAGAAAAAGTGTTATCA--T [1131] JX028260_N_coenophialum__La C-TGGAGATGGGA---CGGAAAAAGAAGGAAAGAAAAAGTGTTATCA--T [1101] JX028261_N_coenophialum__La C-CGGAGATGGGA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1146] JX028262_N_coenophialum__La C-CGGAGATGAGA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1138] JX028266_Neotyphodium__Fa2 C-CGGAGATGGGA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1141] JX028267_Neotyphodium__Fa2 C-CGGAGATGAGA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1130] AF457529_Neotyphodium_Fa3 C-TGGAGATGGGG---CGGGAAAAGATGGAAAGAAAAAGTGTTATCA--T [1127] AF457530_Neotyphodium_Fa3 C-CGGAGATGAGA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1130] AF457532_Neotyphodium_Fa2 C-CGGAGATGGGA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1147] AF457531_Neotyphodium_Fa2 C-CGGAGATGAGA---CGGAAAGAGAACGAAAGAAAAAGTGTTATCA--T [1131] [ 1260 ] [ . ] P2C2_typhina GCTAATCTATGTGACAG [1076] P3C1_typhina GCTAATCTATGTGACAG [1115] P4C2_typhina GCTAATCTATGTGACAG [1115] P6_typhina GCTAATCTATGTGACAG [1117] P7_typhina GCTAATCTATGTGACAG [1117] P10C2_typhina GCTAATCTATGTGACAG [1076] P15C2_typhina GCTAATCTATGTGACAG [1117] P2C1_elymi GCTAATCTATGTGACAG [1137] P3C2_amarillans GCTCATCCATGTGACAG [1147] P4C1_amarillans GCTCATCCATGTGACAG [1135] P5C1_amarillans GCTCATCCATGTGACAG [1135] P9C2_amarillans GCTCATCCATGTGACAG [1147] P10C1_elymi GCTAATCTATGTGACAG [1137] P12C1_amarillans GCTCATCCATGTGACAG [1135] P15C1_elymi GCTAATCTATGTGACAG [1138] AF231231_Epichloe_typhina__Pp GCTAATCTATGTGACAG [1118] AF231222_Epichloe_typhina__Ao GCTAATCTATGTGACAG [1140] AF231227_Epichloe_typhina__Php GCTAATCTATGTGACAG [1142] AF231226_Epichloe_typhina__Php GCTAATCTATGTGACAG [1149] AF231221_Epichloe_typhina__Lp GCTAATCTATGTGACAG [1141] AF231223_Epichloe_typhina__Bp GCTAATCTATGTGACAG [1133] AF231230_Epichloe_typhina__Pn GCTAATCTATGTGACAG [1115] AF231228_Epichloe_typhina__Ps GCTAATCTATGTGACAG [1149] HM138506_Neotyphodium_schardlii__Ca GCTAATCTATGTGACAG [1116] HM138507_Neotyphodium_schardlii__Ca GCTAATCTATGTGACAG [1115] AF231207_Epichloe_clarkii__Hl GCTAATCTATGTGACAG [1139] AF231218_Epichloe_sylvatica__Bs GCTAATCTATGTGACAG [1135] AF231201_Epichloe_brachyelytri__Bee GCTAATCTATGTGACAG [1135] AF231200_Epichloe_brachyelytri__Bee GCTAATCTATGTGACAG [1135] AF231195_Epichloe_baconii__At GCTCATCCATGTGACAG [1152] AF231193_Epichloe_baconii__As GCTCATCCATGTGACAG [1151] AF231196_Epichloe_baconii__Cv GCTCATCCATGTGACAG [1147] AF457504_Epichloe_amarillans__So GCTCATCCATGTGACAG [1167] AF457505_Epichloe_amarillans__Ah GCTCATCCATGTGACAG [1166] AF457506_Epichloe_amarillans__Ap GCTCATCCATGTGACAG [1164] AF231213_Epichloe_festucae__Fl GCTCATCCATGTGACAG [1168] AF231210¬_Epichloe_festucae__Frr GCTCATCCATGTGACAG [1164] AF457498_E._elymi__Ev GCTAATCTATGTGACAG [1145] AF231202_Epichloe_bromicola__Be GCTAATCTATGTGACAG [1142] AF231217_Epichloe_glyceriae__Gs GCTAATCTATGTGACAG [1153] AF231216_Epichloe_glyceriae__Gs GCTAATCTATGTGACAG [1153] DQ134034_Epichloe_yangzii__Rk GCTAATCTATGTGACAG [1157] DQ134030_Epichloe_yangzii__Rk GCTAATCTATGTGACAG [1152] JQ756452_Epichloe_poae__Psj GCTAATCTATGTGACAG [1118] AF457509_N_chisosum__Se GCTAATCTATGTGACAG [1136] AF457508_N_chisosum__Se GCTCATCCATGTGACAG [1168] AF457510_N_chisosum__Se GCTAATCTATGTGACAG [1120] AF457541_N_occultans__Lrr GCTCATCCATGTGACAG [1148] AF457542_N_occultans__Lrr GCTAATCTATGTGACAG [1137] AY707673_N_tembladerae__Ph ----------------- [1065] AY707691_N_tembladerae__Ph GCTCATCCATGTGACAG [1163] AY707677_N_tembladerae__Bs GCTAATCTATGTGACAG [1118] AY707658_N_tembladerae__Bs GCTCATCCATGTGACAG [1163] FJ190584_N_tembladerae__Ba GCT-------------- [1046] FJ190576_N_tembladerae__Ba GCT-------------- [1088] AY707675_N_tembladerae__Fh GCTAATCTATGTGACAG [1119] AY707661_N_tembladerae__Fh GCTCATCCATGTGACAG [1156] AF457518_Neotyphodium__Evi GCTCATCCATGTGACAG [1165] AF457517_Neotyphodium__Bp GCTAATCTATGTGACAG [1139] FJ190572_N_pampeanum__Ba ----------------- [1071] FJ190580_N_pampeanum__Ba GCT-------------- [1043] FJ190570_N_pampeanum__Ba ----------------- [1071] FJ190578_N_pampeanum__Ba GCT-------------- [1043] AF457513_Neotyphodium_Pau GCTAATCTATGTGACAG [1136] AF457514_Neotyphodium_Pau GCTAATCTATGTGACAG [1115] AF457515_Neotyphodium__Fpa GCTAATCCATGTGACAG [1117] AF457516_Neotyphodium__Fpa GCTCATCCATGTGACAG [1167] AF532924_Neotyphodiun__Hbo GCTCATCCATGTGACAG [1165] AF532923_Neotyphodium__Hbo GCTAATCTATGTGACAG [1144] AY163833_Neotyphodium__Hbo GCTAATCTATGTGACAG [1141] AF457524_Neotyphodium__Hbo GCTAATCTATGTGACAG [1139] AF457534_Neotyphodium__Sro GCTAATCTATGTGACAG [1144] AF457533_Neotyphodium__Sro GCTCATCCATGTGACAG [1163] AY707683_Neotyphodium__Phc GCTAATCTATGTGACAG [1115] AY707672_Neotyphodium__Phc GCTCATCCATGTGACAG [1148] JX028260_N_coenophialum__La GCTAATCTATGTGACAG [1118] JX028261_N_coenophialum__La GCTCATCCATGTGACAG [1163] JX028262_N_coenophialum__La GCTCATCCATGTGACAG [1155] JX028266_Neotyphodium__Fa2 GCTCATCCATGTGACAG [1158] JX028267_Neotyphodium__Fa2 GCTCATCCATGTGACAG [1147] AF457529_Neotyphodium_Fa3 GCTAATCTATGTGACAG [1144] AF457530_Neotyphodium_Fa3 GCTCATCCATGTGACAG [1147] AF457532_Neotyphodium_Fa2 GCTCATCCATGTGACAG [1164] AF457531_Neotyphodium_Fa2 GCTCATCCATGTGACAG [1148] ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1-1267; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; END; BEGIN MacClade; Version 4.0 87; LastModified -869424390; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010111 '1' '12' Geneva '9' '202' '1' all; EditorPosition '65' '89' '787' '885'; TreeWindowPosition '46' '6' '955' '1230'; 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