#NEXUS [written Mon Aug 21 19:42:30 CST 2017 by Mesquite version 3.2 (build 801) at MesemiteAir.local/10.0.1.12] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=27; TAXLABELS Ascotaiwania_hughesii_AY094189 Ascotaiwania_hughesii_AY316357 Ascotaiwania_mitriformis_AF132324 Ascotaiwania_persoonii_AY094190 Ascotaiwania_sawada_AF132323 Bactrodesmiastrum_obovatum_648 Bactrodesmiastrum_pyriforme_10 'Bactrodesmiastrum pyriforme 11931_d1_d2' Bertia_moriformis_AY695260 Canalisporium_elegans_GQ390270 Canalisporium_pallidum_GQ390279 Canalisporium_pulchrum_GQ390274 Chaetosphaeria_curvispora_GU180636 Cokeromyces_recurvatus_DQ273812 Coniochaeta_ostrea_DQ470959 Helicoon_fuscosporum_AY856901 Helicoon_gigantasporum_AY856904 Melanospora_zamiae_AY046579 Monotosporella_setosa_28s Morchella_esculenta_AY544664 Nitschkia_grevillei_AY346294 Poroconiochaeta_discoidea_AY346297 Pythomices_valpadarisiacus_EU552152 Scutellinia_scutellata_DQ247806 Thozetella_nivea_EU825200 Trichocladium_opacum_AM292052 Xylaria_hypoxylon_AY544648 ; END; BEGIN CHARACTERS; TITLE Bactrodesmiastrum_and_Bactrodesmium; DIMENSIONS NCHAR=507; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Ascotaiwania_hughesii_AY094189 TAATCTGCA-GATGAGTCTTCG-GGCAAGGCGT----C-GTCC-AA-GTT---------CCCTGGAAT-GGGACGCCGGAGAGGGTGAGAGCCCCGTAC--CGAC-----GG-CCGCCGCGCCTGTGCGAAGCTCATTCGAAGAGTCGAGTAGTTTGGAAATGCTGCTCTAATTGCGGGGTAAATCTCCCGTAAGGCTAAATACCGGCCAGAGACCG-ATAGCGCACAAGTAGCGTGAGCGA-AAGATGAAAAGAGCCTTGAATAAGGGCGTCAAAAAGTATGTGAAATTGTTGTGGGGGAAGCGCTTG-GCGCCAGACGT-GGCGGCGGTTGGTT------ACCCGG-CGTTACTCGC--CGGCGCACTCTG-CCGCCGCCAG---GCCAGCATCGGTTCGGCCT--GGGACCTACTGACGCGAGGAACGTGGCCCTTC-------GG----GGTGTTA-CAGCCTCGCG-GAGACGT---CCCGCGCCGGACCGAGGA--TC-G- Ascotaiwania_hughesii_AY316357 TAATCTGCA-GATGAGTCTTCG-GGCAAGGCGT----C-GTCC-AA-GTT---------CCCTGGAAT-GGGACGCCGGAGAGGGTGAGAGCCCCGTAC--CGAC-----GG-CCGCCGCGCCTGTGCGAAGCTCATTCGAAGAGTCGAGTAGTTTGGAAATGCTGCTCTAATTGCGGGGTAAATCTCCCGTAAGGCTAAATACCGGCCAGAGACCG-ATAGCGCACAAGTAGCGTGAGCGA-AAGATGAAAAGAGCCTTGAATA-GGGCGTCAAAAAGTATGTGAAATTGTTGTGGGG-AAGCGCTTG-GCGCCAGACGT-GGCGGCGGTTGGTT------ACCCGG-CGTT-CTCGC--CGGCGCACTCTG-CCGCCGCCAG---GCCAGCATCGGTTCGGCCT--GGGACCTACTGACGCGAGGAACGTGGCCCTTC-------GG----GGTGTTA-CAGCCTCGCG-GAGACGT---CCCGCGCCGGACCGAGGA--TC-G- Ascotaiwania_mitriformis_AF132324 TAATCTGCA-GATGGGTTTTCC-GGTGAGGCGTG---C-GTCC-AA-GTT---------CCCTGGAAT-GGGATGCCGGAGAGGGTGAGAGCCCCGTAA--AGGC-----GC-GCGCCGAGCCTCTGTGAGGCCCATTCGACGAGTCGAGTAGTTTGGAAATGCTGCTCTAATCGTGGGGTAAATCTCCCATAAGGCTAAATATCGGCCGGAGACCG-ATAGCGCACAAGTAGCGTGAGCGA-AAGATGAAAAGAGCCTTGGATAAGGCCGTCAAAAAGCATGTGAAATTGTTGTGGGGGAAGCGCTCG-TCGCCAGACGT-GGCGGCGGCTGATT------TACCGG-CGTC-CTCGC--CGGTGTCCTCTGCCCGCCGCCAG---GCCAGCACCGGCTCGGACC--GGGGCCCAAAACGCACGGGAACGTGGCTCCCC-----TCGGGG--AGTGTTA-TAGCCCGCGC--CTACGC---CCTGTTCCGGGCCGAGGA---ACG- Ascotaiwania_persoonii_AY094190 TAATCTGCA-GATGGTGTTTCCCGGGGGCGCGCGTGCC-GTCC-AA-GTC-TA-------CCTGGAAC-GGTTCGCCACAGAGGGTGAGAGCCCCGTACGGCGGC-----GCCGCGCCTC-CCCCAGCGAAGCCCATTCGGAGAGTCGAGCAGTTTGGGAATGCTGCTCTAAA-GGGAGGTAAATCCCTTCCAAGGCTAAATACCTGCCGGAGACCG-ATAGCGCAGAAGTAGCGCGAGCGA-AAGGTGAATAGAACTCTGAA-AAGAGAGTTAAA--GCATGTGAAATCGTTGAAGGGGAAGCGGTTT-CGACCAGACTC--GCGCCGGTCGGTC------ACCCAG-CGGT-CACGC--TGGGCTACTCTG-CCGGCGC-GG---GCCAGCATCGGCTGGCGGC--GGGGGTAAAGGCC-CGGGGAACGTGGCTCTTC-------GG----AGTGTTA-TAGCCCCGGGCGCAATGC---CCCGTTGCCGGCCGAGGA--TCCAG Ascotaiwania_sawada_AF132323 TAATCTGGA-GATGGGTTTTCC-AGCGACGCGTG---C-GCC--AGTATTGGAATGGGATGCCGTAGA-GGGATGCCGTAGAGGGTGAGAGCCCCGTAC--TGGC-----GC-GA--CTAGCTTCTTTGTTGCCCATTCGACGAGTCGAGTAGTTTGGAAATGCTGCTCTAATCGTGGGGTAAATCTCCCATAAGGCTAAATATCGGCCGGAGACCG-ATAGCGCACAAGTACCGTGAGCGA-AAGATGAAAAGAGCCTTGGATAAGGGCGTCAAAAAGCATGTGAAATTGTTGTGGGGGAAGCGCTCG-TCGCCAGTCGT-GTCGGCGGCTGATT------TGCCGG-CGTT-CTCGC--GGGTGCCCTCTGCCCGCCGCCAG---GCCAGCACCGGCTCGGCCT--CTGTCCCAATGCACGCGGGAACGTAGCTCCCCA-----CGGGG--AGTGTTA-TAGCCCACGT-GCGACGC---CCTGGGCCGGGCCGAGGA--TC-G- Bactrodesmiastrum_obovatum_648 TAATCTGCA-GATGGGTCTTCCCGGGGGCGCGCGCGCC-GTCC-AA-GT--GA------TCCTGGAAC-GGTCCGCCGTAGAGGGTGAGAGCCCCGTACGGCGGC-----GCCGCGTCTC-CTCCAGCGAAGCCCATTCGGAGAGTCGAGCAGTTTGGGAATGCTGCTCTAAA-GGGAGGTAAATCCCTTCCAAGGCTAAATACCTGCCGGAGACCG-ATAGCGCAGAAGTAGCGCGAGCGA-AAGGTGAATAGAACTCTGAA-AAGAGAGTTAAA--GCATGTGAAATCGTTGAAGGGGAAGCGGTTT-CGACCAGACTC--GCGCCGGTCGGTC------ACCCAG-CGGT-CACGC--TGGGGCACTCTG-CCGGCGC-GG---GCCAGCATCGGCTGGCGGC--GGGGTCAAAGGCC-CTGGGAACGTGGCTCTTC-------GG----AGTGTTA--AGCCCAGGACGCAATGC---CCCGTTGCCGGCCGAGGAA-TCTAG Bactrodesmiastrum_pyriforme_10 TAATCTGCA-GATGGGTCTTCCCGGGGGCGCGCGCGCC-GTCC-AA-GT--GA------TCCTGGAAC-GGTCTGCCGTAGAGGGTGAGAGCCCCGTACGGCGGC-----GCCGCGTCTC-CTCCAGCGAAGCCCATTCGGAGAGTCGAGCAGTTTGGGAATGCTGCTCTAAA-GGGAGGTAAATCCCTTCCAAGGCTAAATACCTGCCGGAGACCG-ATAGCGCAGAAGTAGCGCGAGCGA-AAGGTGAATAGAACTCTGAA-AAGAGAGTTAAA--GCATGTGAAATCGTTGAAGGGGAAGCGGTTT-CGACCAGACTC--GCGCCGGTCGGTC------ACCCAG-CGGT-CACGC--TGGGGCACTCTG-CCGGCGC-GG---GCCAGCATCGGCTGGCGGC--GGGGTCAAAGGCC-CTGGGAACGTGGCTCTTC-------GG----AGTGTTA-CAGCCCAGGGCGCAATGC---CCCGTCGCCGGCCGAGGAA-TCTAG 'Bactrodesmiastrum pyriforme 11931_d1_d2' TAATCTGCAAGATGGGTCTTCCCGGGGGCGCGCGCGCC-GTCC-AA-GT--GA------TCCTGGAAC-GGTCTGCCGTAGAGGGTGAGAGCCCCGTACGGCGGC-----GCCGCGTCTC-CTCCAGCGAAGCCCATTCGGAGAGTCGAGCAGTTTGGGAATGCTGCTCTAAA-GGGAGGTAAATCCCTTCCAAGGCTAAATACCTGCCGGAGACCG-ATAGCGCAGAAGTAGCGCGAGCGA-AAGGTGAATAGAACTCTGAA-AAGAGAGTTAAA--GCATGTGAAATCGTTGAAGGGGAAGCGGTTT-CGACCAGACTC--GCGCCGGTCGGTC------ACCCAG-CGGT-CACGC--TGGGGCACTCTG-CCGGCGC-GG---GCCAGCATCGGCTGGCGGC--GGGGTCAAAGGCC-CTGGGAACGTGGCTCTTC-------GG----AGTGTTA-CAGCCCAGGGCGCAATGC---CCCGTCGCCGGCCGAGGAA-TCT-- Bertia_moriformis_AY695260 TAATCTGCA-GAGGGTGCCCTG-GGTGTAGCCC--GCC-GCCG-A--GTT---------CCCTGGGAC-GGGACGCCGTAGAGGGTGAGAGCCCCGTGC---GGT-----GGTGTGGCGAGCCCATTAAGGGCCCCTTCGGAGAGTCGCGTAGCTTGGGAATGCTGCGCAAAGTGGGAGGTATACCCCTTCTAAGGCTAAATACTGGCCGGAGACCG-ATAGCGCACAAGTAGAGTGATCGA-AAGATGAAAAGCACCTTGGA-AAGGGGGTTAAACAGTACGTGAAATTGCTGAGGGGGAAGCGCCTG-CCCCCAGACTCGGGC-CCTGTGGCTTTCACCTAGCCTC-TTYG-TGGGC--TAGGGTATTCCGC-GGGCCC-GG---GCCAGCGCCGGCG-GCATCCCGGGGTGCAAAGGCGTCGGGAATGTGGCCGCCCC----TCGGGGC-GGTGTTA-TAGCCCGGCGTGTCATAC---CCTGGGGCCGGCCGAGGC---CCA- Canalisporium_elegans_GQ390270 TAATCTGCA-GATGGGTTTTCC-GGTGAGGTGCA---C-GTCC-AA-GTT---------CCCTGGAAT-GGGACGCCGTAGAGGGTGAGAGCCCCGTAC--TGGC-----GCTGCGCCGAGCCTCTGTGTGGCCCATTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAATTGCGAGGTAAATCTCTCGTAAGGCTAAATACCGGCCAGAGACCG-ATAGCGCACAAGTAGCGTGAGCGA-AAGATGAAAAGAGCCTTGGATAAGGGCGTCAAAAAGCATGTGAAATCGTTATGGGGGAAGCGCTCG-TCGCCAGACGT-GGCGGCGGCCGGTT------AGTCGG-CGTC-CTCGC--CGACGCACTCGGATCGTCGCCAG---GCCAGCAACAGCTCGGACT--GGGGCCTACTGCCGGAGGGAACGTAGCTCCTC-----TCGGGG--AGTGTTA-TAGCCCTTCG-GCGACGC---CCTGGGACGGGCTGAGGA---CCG- Canalisporium_pallidum_GQ390279 TAATCTGCA-GATGGGTTTTCC-GGTGAGGCACG---C-GTCC-AA-GTT---------CCCTGGAAT-GGGACGCCGTAGAGGGTGAGAGCCCCGTAC--TGGC-----GCCGTGCCGAGCCTCTGTGAGGCCCATTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAATTGCGAGGTAAATCTCTCGTAAGGCTAAATACCGGCCAGAGACCG-ATAGCGCACAAGTAGCGTGAGCGA-AAGATGAAAAGAGCCTTGGATAAGGGCGTCAAAAAGCATGTGAAATCGTTATGGGGGAAGCGCTCG-TCGCCAGACGT-GGCGGCGGCTGGTT------AGCCGG-CGTT-CTCGC--CGGCGCACTCGGACCGCCGCCAG---GCCAGCAACAGCTCGGGCT--GGGGCCCACTGCCGGAGGGAACGTGGCTCCTC-----TCGGGG--AGTGTTA-TAGCCCTTCG-GCGACGC---CCTGGGCCGGGCTGAGGA---CCG- Canalisporium_pulchrum_GQ390274 TAATCTGCA-GATGGGTTTTCC-GGTGAGGTGCA---C-GTCC-AA-GTT---------CCCTGGAAT-GGGACGCCGTAGAGGGTGAGAGCCCCGTAC--TGGC-----GCGGCGCCGAGCCTCTGTGTTACCCATTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAATTGCGAGGTAAATCTCTCGTAAGGCTAAATACCGGCCAGAGACCG-ATAGCGCACAAGTAGCGTGAGCGA-AAGATGAAAAGAGCCTTGGATAAGGGCGTCAAAAAGCATGTGAAATCGTTATGGGGGAAGCGCTCG-TCGCCAGACGT-GGCGGCGGCCGGTT------AGTCGG-CGTC-CTCGC--CGACGCACTCGGATCGTCGCCAG---GCCAGCAACAGCTCGGACT--GGGGCCTACTGCCGTCGGGAACGTAGCTCCTC-----TCGGGG--AGTGTTA-TAGCCCTTCG-GCGACGC---CCTGGGCCGGGCTGAGGA---CCG- Chaetosphaeria_curvispora_GU180636 TAATTTGTA-GAGGATGCTTCG-GGCGCGGCGCC------TTCCAA-GTC---------CCCTGGAAC-GGGGCGCCAGAGAGGGTGAGAGCCCCGTACTGTC-------GGCCGCCAAGCCT-GTGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAGACCCCTTCTAAAGCTAAATACCGGCCAGAGACCG-ATAGCGCACAAGTAGAGTGATCGA-AAGATGAAAAGCACTTTGAA-AAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTC-GTGACCAGACTT-GCGCCGGGCCGATC------ATCTGG-CGTT-CTCGCC-AG-TGCACTCGACCCGGCTCAG----GCCAGCGTCGGTTCGCGCG--GGGGGATAAAGGCGTCGGGCACGTGGCTCCT------CCGGG---AGTGTTA-TAGCCCGGCGCGTCATGT---CCCCGCGCGGACCGAGGT---TCGC Cokeromyces_recurvatus_DQ273812 TAGACTGGA-GAAGTGTTTTAT-GGCACGCCGAG------TGAAAAAGTC---------CCTTGGAAC-AGGGCATCATAGAGGGTGAGAATCCCGTGAATTCACTTGA-GTATATGTTGTCAACTTTAATACACTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATTGGGTGGTAAATCTCACCTAAAGCTAAATATTGGCGAGAGACCG-ATAGCGAACAAGTACCGTGAGGGA-AAGATGAAAAGAACTTTGAA-AAGAGAGTTAAACAGTACGTGAAATTGTTAAAAGGGAACCGTTT-GGAGCCAGACCG-GCTTTATCGTAATCA-----ATCTAG-GTTTCGAC-CT-GGATGCACTTGCGGTAGATTTGCCT-GCCAACGACAGTTTTTTTT--GAGGGAAAAAACTAGGAGGAATGTGGCCCTTAACTTGTTAGG---GGTGTTA-TAGCCTTTTAGAAAATAC---CTTGAATTGGACTGAGGA---ACGC Coniochaeta_ostrea_DQ470959 TAATTTGTA-GAGGATGCTTTT-GGCGAGGTGCC------TTCTGA-GTT---------CCCTGGAAC-GGGACGCCACAGAGGGTGAGAGCCCCGTATAGTC-------GGACACCTAGCCT-CTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATCTCTTCTAAAGCTAAATACTGGCCAGAGACCG-ATAGCGCACAAGTAGAGTGATCGA-AAGATGAAAAGCACTTTGAA-AAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTT-GTGACCAGACTT-GTGCCGGGCTGATC------ATCCAG-TGTT-CTCACT-GG-TGCACTCGACCCGGCTCAG----GCCAGCGTCGGTTCTCGCA--GGGGGACAAAAGCTCCGGGAACGTGGCTCCT------CCGGG---AGTGTTA-TAGCCCGCTGCTCAATAC---CCTTGCGGGGACCGAGGT---TCGC Helicoon_fuscosporum_AY856901 TAATTTGTA-GAGGATGTTTCG-GGTGAAGCCGC------GGTCCAAGTC---------CCTTGGAAC-AGGACGTCATAGAGGGTGAGAACCCCGTAC-CTGGCC----GCCGGTGCCCCCCGCTGTGAAACTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATTGGTGGTAAATTCCATCTAAAGCTAAATACCGGCCAGAGACCG-ATAGCGCACAAGTAGAGTGATCGA-AAGATGAAAAGCACTTTGAA-AAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTT-GCGGCCAGACTT-GCCTGCAGTTGCTC------AGCCCG-CCTT--TTGGC-GGGTGCACTCTTCTGCAGTCAG----GCCAGCATCGGTTTGGGCG--GTCGGATAAAGGCGTTGGGAACGTGGCCTCCCC----TCGGGG-AGGTGTTA-TAGCCCGGCGCGCAATGCG--ACCAGCCCGGACCGAGGT---TCGC Helicoon_gigantasporum_AY856904 TAATTTGTA-GAGGATGCTTCG-GCTTACGCCCC------GGTCTAAGTT---------CCTTGGAAC-AGGACGTCACAGAGGGTGAGAATCCCGTTT-GTGGCC----GGCGGCCTCCGCC-ATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGAGAATGCAGCTCTAAATGGGAGGTATATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG-ATAGCGCACAAGTAGAGTGATCGA-AAGATGAAAAGCACTTTGGA-AAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTT-GCGACCAGACTT-GCCCGCAGATGCTC------AGCCGG-TCCT-TCGGCC-GG-TGCACTCTTCTGCGGTCAG----GCCAGCATCAGTTCGGGCG--GTCGGATAAAGGCCTTGGGAATGTGGCTCCTC-----TCGGG--GAGTGTTA-TAGCCCTTGGTGCAATACG--GCCCGCCTGGACTGAGGC---CCGC Melanospora_zamiae_AY046579 TAATCTGCA-GAGGAAGCGTCT-GGTGCGGTGC----CGGCCT-A--GTT---------CCCTGGAAC-GGGACGCCGTAGAGGGTGACAGCCCCGTAC---GGT-----CGGCCACCAAACCTGTGTGTCGCTCCTTCGAAGAGTCGCGTAGTTTGGGAATGCTGCGCAAAGTGGGAGGTATGCTCCTCCTAAGGCTAAATACCGGCCAGAGACCG-ATAGCGCACAAGTAGAGTGATCGA-AAGATGAAAAGCACCTTGAA-AATGGGGTTAAAAAGTACGTGAAATTGCCAAAGGGGAAGCGCTCG-TGGCCAGACTCGTGC-CCTATGGATC------AACTGG-CTAT-TTCGC--CAATGCACTCCATTGGGCTC-GG---GCCAGCGTCGGTCGGCGCC--GGTACTAAAAGGCAGCGTGAACGTGGCTCTCT-----TCGGGG--AGTGTTA-TAGCGCGCTGTGTAATGT---GCTGGCGCCGTCCGAGGA---CCG- Monotosporella_setosa_28s TAATCTGCA-GATGAGTCTTTG-GGTTACGTGC----C-GTCT-AA-GTT---------CCCTGGAATTGGGACGCCTAGAGGGGTGAGAGCCCCGTAC--CGAC-----GT-GCGCCGCGCCTGTTTAAAGTTCATTCGAAGAGTCGAGTAGTTTGGAAATGCTGCTCTAATTGTGGGGTAAATCTCCCATAGGGCTAAATACCGGCCAGAGACCG-ATAGCGCACAAGTAGCGTGAGCGAGAAGGTGAAAAGAGCCTTGAATAAGGGTGTCAAAAAGTATGTGAAATTGTTATGGGGGAAGCGCTTAAGTGCCAGACCTTGGTGGCGGTTGGTT------ACCCGG-TGTTCTTCGC--CGGCGCACTCTT-CCGTCTCCAG---GCCAGCATCGGTTCGGCTC--GGGGCTCACTGCAGCGGGGAACGTGGCCTTC--------GG----GGTGTTA-TAGCCTCGTT-GCGACGT---CCCGAACCGGACCGAGGA--TC-G- Morchella_esculenta_AY544664 TAATTTTGT-GA-GGCATCTCCGGGTAGGGCGC----CGGTCT-AA-GTT---------CCTTGGAAC-AGGACGTCATAGAGGGTGAGAATCCCGTGCT-TGGCT----GGCTGTCCCCGCCCATGTGAGGTGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGTGGGAGACCG-ATAGCGCACAAGTAGAGTGATCGA-AAGATGAAAAGCACTTTGAA-AATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTG-AGACCAGAGTTCGGTGGGGAGTGATC------AGCCGT-CCTTCTGGG---CGGTGCACTTGCTCCCCTCC-GG---GCCAGCATCGGTTGGGACG--GCGGGATAAAGGTCCCGGGAATGTGGCTCCTT-----TTGGGG--AGTGTTA-TAGCCCGGGTGA--ATGCC--GCCAGCCCCGACCGAGGA---CCG- Nitschkia_grevillei_AY346294 TAATCTGCA-GAGGATGCCTCA-GGTATAGTTC-C-CC-GCCG-A--GTT---------CCCTGGAAC-GGGACGCCGTAGAGGGTGAGAGCCCCGTGC---GGT-----GGGTCGACGAGCCTATCAGAGGCTCCTTCGGAGAGTCGCGTAGCTTGGGAATGCTGCGCAAAGCGGGAGGTATACCCCTTCTAAAGCTAAATACCGGCTGGAGACCG-ATAGCGCACAAGTAGAGTGATCGA-AAGATGAAAAGCACCTTGGA-AAGGGGGTTAAACAGTATGTGAAATTGTTGAAAGGGAAGCGCCCG-TGGTCAGACTCGTGC-CCTGCGGATC------AGCCTG-CTC--TCCGC--CGGTGCACTCCGCAGGGCTC-GG---GCCAGCGTCGGCTTGCGTCC-GGGGTCCAAAGGCATCGGGAATGTGGCTCCCTT----CCGGGGG-AGCGTTA-TAGCCCGGCGCGTAATAC---CCTGGTGCGGGCCGAGGT---CTG- Poroconiochaeta_discoidea_AY346297 TAATTTGTA-GAGGATGCTTTT-GGTGAGGTGCC------TTCTGA-GTT---------CCCTGGAAC-GGGACGCCAGAGAGGGTGAGAGCCCCGTATAGTC-------GGCCACCGATCCT-CTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATCTCTTCTAAAGCTAAATATTGGCCAGAGACCG-ATAGCGCACAAGTAGAGTGATCGA-AAGATGAAAAGCACTTTGAA-AAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGCTT-GTGACCAGACTT-GTGCCGGGCTGATC------ATCCAG-TGTT-CTCACT-GG-TGCACTCAGCCCGGCTCAG----GCCAGCGTCGGTTCTCGCA--GGTGGACAAAAGCTCCGGGAACGTAGCTCCT------TCGGG---AGTGTTA-TAGCCCGTTGCTCAATAC---ACCTGCGGGGACCGAGGT---TCGC Pythomices_valpadarisiacus_EU552152 TAATTTGCA-GAGGGTGCTTTG-GCGTTGGCAGC------GGTCTAAGTT---------CCTTGGAAC-AGGACATCACAGAGGGTGAGAATCCCGTAC-GTGGTC----GCTGGCCTTCGCC-GTGTAAAGCCCCTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCG-ATAGCGCACAAGTAGAGTGATCGA-AAGATGAAAAGCACTTTGGA-AAGAGAGTCAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTT-GCGGCCAGACTT-GCCTGCAGTTGCTC------ATCTAG-GCGTTTTCGCC-TGGTGCACTCTTCTGCGGGCAG----GCCAGCATCAGTTTGGGCA--ACCGGATAAGGGTCTCTGTCATGTATCTTTCT-----TCGGAA-TGACCTTA-TAGGGGA-GACGTAGTACG--GTTAGCCTGGACTGAGGT---CCGC Scutellinia_scutellata_DQ247806 TAACTAGGA-GG-GACATATTCGGGGGTGGCGC----C-GTCCTAA-GTT---------CCTTGGAAC-AGGACGTCACAGAGGGTGAGAATCCCGTGCC-TGGAT----GGCTGCCCATCACCATGTGAATTGTCTCCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCG-ATAGCGCACAAGTAGAGTGATCGA-AAGATGAAAAGCACTTTGAA-AAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTG-CGACCAGA-CTCGATCTTTGGCGATC------AGCCGGACCTTCCAGGTT-CGGTGCACTTGCCACTGATC-GG---GCCAGCATCGGTTCCGAGG--GCGGGATAAAAGGTTGGGGAATGTGGCTTCCT-----CCGGGG--AGTGTTA-TAGACCCGATCATAATGCC--GCCATTTGGGACCGAGGA---CCG- Thozetella_nivea_EU825200 TAATTTGCA-GAGGATGCTTCT-GGCGCGGTGCC------TTCCAA-GTC---------CCCTGGAAC-GGGGCGCCATAGAGGGTGAGAGCCCCGTCTGGTT-------GGCCGCCAAGCCT-GTGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAGACCCCTTCTAAAGCTAAATACCGGCCAGAGACCG-ATAGCGCACAAGTAGAGTGATCGA-AAGATGAAAAGCACTTTGAA-AAGAGGGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTT-GTGACCAGACGT-GCGTCGGGGTGTTC------AGCGGG-CGTT-CTCGCC-CG-TGCACTCGCCCCGGCGCAG----GCCAGCGTCGGTTCGGGCG--GGGGGACAAAGGCGTTGGGAACGTAGCTCCT------CCGGG---AGTGTTA-TATCCCAGCGTGTCATGC---CCCCGCCTGGACCGAGGT---TCGC Trichocladium_opacum_AM292052 TAATTTGCA-GAGGGCGCTTTG-GTGTTGGCAGC------AGCCTAAGTT---------CCTTGGAAC-AGGTCATCATAGAGGGTGAGAATCCCGTAT-GTGGCT----GCTTGTCTTCGCC-GTGTAAAGCCCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCG-ATAGCGCACAAGTAGAGTGATCGA-AAGATGAAAAGCACTTTGGA-AAGAGAGTCAAAAAGCACGTGAAATTGTTGAAAGGGAAGCTCTT-GCAGCCAGACGT-GCCCGTAGTTGCTC------ATCGGG-G-GTTCTCCCC-CG-TGTACTCTTCTATGGGCAG----GCCAGCATCAGTCCGGGCG--GTTGGAGAAAGACCTGTGTCATGTAGCTGTTT-----TCGGG--CAGTGTTA-TAGGGCA-GGTGGAATGCA--ACCAGCCTGGACTGAGGT---CCGC Xylaria_hypoxylon_AY544648 TAATTTGTA-GAGGATGCTTTT-GGCGCGGTGCC------TTCCGA-GTT---------CCCTGGAAC-GGGACGCCTTACAGGGTGAGAGCCCCGTACGGTT-------GGACACCAAGCCT-CTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCG-ATAGCGCACAAGTAGAGTGATCGA-AAGATGAAAAGCACTTTGAA-AAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTT-GCGACCAGACCT--TTTCTTAGCGGATC-----ATCCGG-TGTT-ATCACC-GG-TGCACTT-CGCTAAGTTTAG---GCCAGCATCGGTTTCTGTA--GGGGGATAAAAGCCTTGGGAACGTAGCTCCT------TCGGG---AGTGTTA-TAGCCCTTTGCATAATAC---CCTTCTGGGGACCGAGGA---CCGC ; END; begin mrbayes; charset Character_Matrix = 1 -507; partition matrices = 1 : Character_Matrix; set partition = matrices; lset applyto = ( 1 ) nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.5 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; mcmc; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 507; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 507; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 507; END; BEGIN TREES; Title Bactrodesmiastrum_and_Bactrodesmium; ID 015e0498aba28; LINK Taxa = Taxa; TRANSLATE [0] 1 Ascotaiwania_hughesii_AY094189, [1] 2 Ascotaiwania_hughesii_AY316357, [2] 3 Ascotaiwania_mitriformis_AF132324, [3] 4 Ascotaiwania_persoonii_AY094190, [4] 5 Ascotaiwania_sawada_AF132323, [5] 6 Bactrodesmiastrum_obovatum_648, [6] 7 Bactrodesmiastrum_pyriforme_10, [7] 8 'Bactrodesmiastrum pyriforme 11931_d1_d2', [8] 9 Bertia_moriformis_AY695260, [9] 10 Canalisporium_elegans_GQ390270, [10] 11 Canalisporium_pallidum_GQ390279, [11] 12 Canalisporium_pulchrum_GQ390274, [12] 13 Chaetosphaeria_curvispora_GU180636, [13] 14 Cokeromyces_recurvatus_DQ273812, [14] 15 Coniochaeta_ostrea_DQ470959, [15] 16 Helicoon_fuscosporum_AY856901, [16] 17 Helicoon_gigantasporum_AY856904, [17] 18 Melanospora_zamiae_AY046579, [18] 19 Monotosporella_setosa_28s, [19] 20 Morchella_esculenta_AY544664, [20] 21 Nitschkia_grevillei_AY346294, [21] 22 Poroconiochaeta_discoidea_AY346297, [22] 23 Pythomices_valpadarisiacus_EU552152, [23] 24 Scutellinia_scutellata_DQ247806, [24] 25 Thozetella_nivea_EU825200, [25] 26 Trichocladium_opacum_AM292052, [26] 27 Xylaria_hypoxylon_AY544648; TREE 'PAUP_1' = (14:0.310685,((20:0.086497,24:0.125657):0.013677,((16:0.079306,(17:0.040588,(23:0.075363,26:0.092277):0.104493):0.046737):0.058599,(((13:0.026942,25:0.061828):0.022464,(27:0.145501,(15:0.005672,22:0.032014):0.02396):0.070723):0.043141,((18:0.150645,(9:0.167882,21:0.037417):0.083749):0.095598,((4:0.033798,(6:0.002119,(7:0.0,8:0.0):0.0058):0.013308):0.187231,((19:0.119634,(1:0.0,2:0.0):0.033304):0.071088,((3:0.042867,5:0.094957):0.061977,(11:0.003963,(10:0.002623,12:0.012253):0.033404):0.031401):0.034724):0.128587):0.099401):0.071279):0.106611):0.109286):0.310685)[% ] [% ] [% setBetweenBits = selected ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1503315750754; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8947923845896356891; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2598795397787318439; mqVersion 320; checksumv 0 3 3553982243 null getNumChars 507 numChars 507 getNumTaxa 27 numTaxa 27 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 235086.0 sumSquares -9.2233720368546089E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 209; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 968 632; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8947923845896356891 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015e0498aba28; toggleUseWeights off; endTell; setAssignedID 2389.1503315745300.3064135858451692032; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 759 560; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2598795397787318439 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 759 560; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;