#NEXUS [written Tue Sep 23 15:13:09 SAST 2014 by Mesquite version 3.01 (build 658) at Martins-MacBook-Pro.local/10.0.0.4] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=20; TAXLABELS Armillaria_tabescens_HQ285907_HAt2S5_Ukraine Armillaria_tabescens_HQ285906_HAt1S5_Ukraine Armillaria_tabescens_HQ285908_HAt5S3_Ukraine Armillaria_tabescens_JF313111_OOI210_USA_Georgia Armillaria_tabescens_JF313113_ATMUS2_USA_South Armillaria_tabescens_FJ618674_PT89_84_Italy Armillaria_tabescens_FJ618658_PT84_12_France Armillaria_tabescens_JF313112_OOI99_USA_Georgia Armillaria_tabescens_AB510805_96_3_3_Japan Armillaria_tabescens_AB510806_2002_06_03_Japan Armillaria_tabescens_AB539514_02_26_Japan Armillaria_tabescens_AB510804_96_1_8_Japan Armillaria_tabescens_JF746930_ET4_France_Gers Armillaria_tabescens_JF746929_ET3_France_Puy_de_Dome Armillaria_tabescens_CMW31118_China Armillaria_tabescens_CMW31119_Italy Armillaria_tabescens_CMW31120_Italy Armillaria_mellea_CMW31171 Armillaria_mellea_CMW31172 Armillaria_mellea_CMW31161 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1084; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Armillaria_tabescens_HQ285907_HAt2S5_Ukraine ----CGTGACTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGTGCCATCCTTATCATTGCTGGTGGTACTGGTGAATTCGAAGCCGGTATCTCCAAGGATGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTTCGACATTTATCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGACAACATGTTGGAGGAGTCCGCCAAGTAAGTCATTACCATATTATGAGCGATGCGGCGGCTTAACGTTGTTGAAAGCATGCCATGGTACAAGGGCTGGACGAAGGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCTATTGATGCCATTGAGCCCCCTGTCCGACCCTCCGACAAGCCTCTCCGTCTTCCTCTCCAGGACGTCTACAAGATCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_tabescens_HQ285906_HAt1S5_Ukraine ----CGTGACTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGTGCCATCCTTATCATTGCTGGTGGTACTGGTGAATTCGAAGCCGGTATCTCCAAGGACGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTCCGACATTTATCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGACAATATGTTGGAGGAGTCCGCCAAGTAAGTCATTACCATATTATGAGCGATGCGGCGGCTTAACGTTGTTGAAAGCATGCCATGGTACAAGGGCTGGACGAAGGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCTATTGATGCCATTGAGCCCCCTGTCCGACCCTCCGACAAGCCTCTCCGTCTTCCTCTCCAGGACGTCTACAAGATCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_tabescens_HQ285908_HAt5S3_Ukraine ----CGTGACTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGATTGTGCCATCCTTATCATTGCTGGTGGTACTGGTGAATTCGAAGCCGGTATCTCCAAGGACGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTCCGACATTTATCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGACAATATGTTGGAGGAGTCCGCCAAGTAAGTCATTACCATATTATGAGCGATGCGGCGGCTTAACGTTGTTGAAAGCATGCCATGGTACAAGGGCTGGACGAAGGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCTATTGATGCCATTGAGCCCCCTGTCCGACCCTCCGACAAGCCTCTCCGTCTTCCTCTCCAGGACGTCTACAAGATCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_tabescens_JF313111_OOI210_USA_Georgia -------------------------ATCACTGGTACCTCCCAGGCTGATTGTGCCATCCTTATCATTGCTGGTGGTACTGGTGAATTCGAAGCCGGTATCTCCAAGGATGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTCTGACATTTATCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAGTCCGTTGCTTTCGTCCCCATCTCGGGATGGCACGGTGATAACATGTTGGAGGAGTCCGTCAAGTAAGTCATTACCATATTATGAGCGATACGGCTTCTTAACGTCGTTGAAAGCATGCCATGGTACAAGGGTTGGACGAAGGAGACCAAGGCTGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCCATTGATGCCATTGAGCCCCCTGTCCGACCCTCCGACAAGCCTCTCCGTCTTCCTCTCCAGGATGTCTACAAAATCGGGGGTATTGGGACTGTGCCAGTCGGTCGTGTTGAGACTGGTATCATCAAGGCCGGAATGGTCGTCACCTTCGCTCCTTCTAACGTTACCACTGAAGTGAAGTCCGTCGAAATGCACCACGAGCAGCTCGAGCAGGGTCTTCCTGGTGACAACGTTGGATTCAACGTCAAGTGCGTTGAAAGTTATCTGCATATATGTGTTGTCTGCTGACATTGGTGCATAGGAACGTCTCGGTCAAGGATATTCGTCGTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_tabescens_JF313113_ATMUS2_USA_South -------------------------ATCACTGGTACCTCCCAGGCTGATTGTGCCATCCTTATCATTGCTGGTGGTACTGGTGAATTCGAAGCCGGTATCTCCAAGGATGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTCTGACATTTATCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTMGGCTACAACCCCAAGTCCGTTGCTTTCGTCCCCATCTCGGGATGGCACGGTGATAACATGTTGGAGGAGTCCGTCAAGTAAGTCATTACCATATTATGAGCGATACGGCTTCTTAACGTCGTTGAAAGCATGCCATGGTACAAGGGTTGGACGAAGGAGACCAAGGCTGGTGTCGTCAAGGGCAAGACTCTCCTCGAYGCCATTGATGCCATTGAGCCCCCTGTCCGACCCTCCGACAAGCCTCTCCGTCTTCCTCTCCAGGATGTCTACAAAATCGGGGGTATTGGGACTGTGCCAGTCGGTCGTGTTGAGACTGGTATCATCAAGGCCGGAATGGTCGTCACCTTCGCTCCTTCTAACGTTACCACTGAAGTGAAGTCCGTCGAAATGCACCACGAGCAGCTCGAGCAGGGTCTTCCTGGTGACAACGTTGGATTCAACGTCAAGTGCGTTGAAAGTTATCTGCATATATGTGTTGTCTGCTGACATTGGTGCATAGGAACGTCTCGGTCAAGGATATTCGTCGTGGAAACGTCGCTTCTGACTCTAAGAACGACCCTGCTAAGGAAGCCGCCTCTTTCAACGCTCAGGTCATCATTCTCAACCACCCTGGTCAAATCGGTGCTGGTTACGCTCCCGTTCTTGATTGTCACACTGCCCACATTGCCTGCAAGTTYGCYGAGCTCATTGAGAAGATTGATCGCCGAACGGGTAAATCRCTGGAAGCCAACCCCAAGTTCGTCAAGTCTGGTGATGCTTGCATTGCTAAGCTTG Armillaria_tabescens_FJ618674_PT89_84_Italy -------------------------------------------------------------------GCTGGTGGTACTGGTGAATTCGAAGCCGGTATCTCCAAGGATGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCARCAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTTCGACATTTATCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTGTTGCTTTCGTCCCCATCTCYGGATGGCACGGTGACAACATGTTGGAGGAGTCCGCCAAGTAAGTCATTACCATATTATGAGCGATGCGGCGGCTTAACGTTGTTGAAAGCATGCCATGGTACAAGGGCTGGACGAAGGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCTATTGATGCCATTGAGCCCCCTGTCCGACCCTCCGACAAGCCTCTCCGTCTTCCTCTCCAGGATGTCTACARAATCGGTGGTATTGGAACTGTGCCAGTCGGTCGTGTTGAGACTGGTATCATCAAGGCCGGGATGGTTGTCACTTTCGCTCCTTCTAACGTCACCACTGAAGTGAAGTCCGTCGAAATGCACCACGAGCAGCTCGAGCAGGGTCTTCCTGGTGACAACGTTGGATTTAACGTCAAGTGCGTTGAAAGTTATCTGCATATATGTGTTGTCTGCTGACATTGGTGCATAGGAACGTCTCGGTCAAGGATATTCGTCGTGGAAACGTCGCTTCTGACTCTAAGAACGACCCTGCTAAGGAAGCCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_tabescens_FJ618658_PT84_12_France -------------------------------------------------------------------GCTGGTGGTACTGGTGAATTCGAAGCCGGTATCTCCAAGGACGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAAMAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTYCGCGAAGTCCGACATTTATCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGACAAYATGTTGGAGGAGTCCGCCAAGTAAGTCATTACSATATTATGAGCGATGCGGCGGCTTAACGTTGTTGAAAGCATGCCATGGTACAAGGGCTGGACGAAGGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCTATTGATGCCATTGAGCCCCCTGTCCGACCCTCCGACAAGCCTCTCCGTCTTCCTCTCCAGGATGTCTACAAAATCGGTGGTATTGGAACTGTGCCAGTCGGTCGTGTTGAGACTGGTATCATCAAGGCCGGAATGGTCGTCACCTTCGCTCCTTCTAACGTTACCACTGAAGTGAAGTCCGTCGAAATGCACCACGAGCAGCTCGAGCAGGGTCTTCCTGGTGACAACGTTGGATTCAACGTCAAGTGCGTTGAAAGTTATCTGYATATATGTGTTGTCTGCTGACATTGGTGCATAGGAACGTCTCGGTCAAGGATATTCGTCGTGGAAACGTCGCTTCTGACTCTAAGAACGACCCTGCTAAGGAAGCCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_tabescens_JF313112_OOI99_USA_Georgia -----------------------------------------------ATTGTGCCATCCTTATCATTGCTGGTGGTACTGGTGAATTCGAAGCCGGTATCTCCAAGGATGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTCTGACATTTATCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTMGGCTACAACCCCAAGTCCGTTGCTTTCGTCCCCATCTCGGGATGGCACGGTGATAACATGTTGGAGGAGTCCGTCAAGTAAGTCATTACCATATTATGAGCGATACGGCTTCTTAACGTCGTTGAAAGCATGCCATGGTACAAGGGTTGGACGAAGGAGACCAAGGCTGGTGTCGTCAAGGGCAAGACTCTCCTCGAYGCCATTGATGCCATTGAGCCCCCTGTCCGACCCTCCGACAAGCCTCTCCGTCTTCCTCTCCAGGATGTCTACAAAATCGGGGGTATTGGGACTGTGCCAGTCGGTCGTGTTGAGACTGGTATCATCAAGGCCGGAATGGTCGTCACCTTCGCTCCTTCTAACGTTACCACTGAAGTGAAGTCCGTCGAAATGCACCACGAGCAGCTCGAGCAGGGTCTTCCTGGTGACAACGTTGGATTCAACGTCAAGTGCGTTGAAAGTTATCTGCATATATGTGTTGTCTGCTGACATTGGTGCATAGGAACGTCTCGGTCAAGGATATTCGTCGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_tabescens_AB510805_96_3_3_Japan -------------------------------------------------------------------------GGTACTGGTGAATTCGAAGCCGGTATCTCCAAGGATGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTCCGACATTTGTCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGACAACATGTTGGAGGAGTCCGCCAAGTAAGTCATTACCATATTATGAGCGATGCGGCGGCTTAACGTTATTGAAAGCATGCCATGGTACAAGGGCTGGACGAAGGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCTATTGATGCCATTGAGCCCCCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_tabescens_AB510806_2002_06_03_Japan -------------------------------------------------------------------------GGTACTGGTGAATTCGAAGCCGGTATCTCCAAGGATGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTCCGACATTTGTCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGACAACATGTTGGAGGAGTCCGCCAAGTAAGTCATTACCATATTATGAGCGATGCGGCGGCTTAACGTTATTGAAAGCATGCCATGGTACAAGGGCTGGACGAAGGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCTATTGATGCCATTGAGCCCCCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_tabescens_AB539514_02_26_Japan -------------------------------------------------------------------------GGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTCCGACATTTGTCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGACAACATGTTGGAGGAGTCCGCCAAGTAAGTCATTACCATATTATGAGCGATGCGGCGGCTTAACGTTATTGAAAGCATGCCATGGTACAAGGGCTGGACGAAGGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCTATTGATGCCATTGAGCCCCCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_tabescens_AB510804_96_1_8_Japan -------------------------------------------------------------------------GGTACTGGTGAATTCCAAGCCGGTATCTCCAAGGATGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTCCGACATTTGTCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGACAACATGTTGGAGGAGTCCGCCAAGTAAGTCATTACCATATTATGAGCGATGCGGCGGCTTAACGTTATTGAAAGCATGCCATGGTACAAGGGCTGGACGAAGGAGACCAAGGCCGGTGTCGTCAAGGGCACGACTCTCCTCGATGCTATTGATGCCATTGAGCCCCCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_tabescens_JF746930_ET4_France_Gers -------------------------------------------------------------------------------------TTCGAAGCCGGTATCTCCAAGGACGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTCCGACATTTATCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGACAATATGTTGGAGGAGTCCGCCAAGTAAGTCATTACCATATTATGAGCGATGCGGCGGCTTAACGTTGTTGAAAGCATGCCATGGTACAAGGGCTGGACGAAGGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCTATTGATGCCATTGAGCCCCCTGTCCGACCCTCCGACAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Armillaria_tabescens_JF746929_ET3_France_Puy_de_Dome --------------------------------------------------------------------------------------TCGAAGCCGGTATCTCCAAGGACGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTCCGACATTTATCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGACAATATGTTGGAGGAGTCCGCCAAGTAAGTCATTACCATATTATGAGCGATGCGGCGGCTTAACGTTGTTGAAAGCATGCCATGGTACAAGGGCTGGACGAAGGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCTATTGATGCCATTGAGCCCCCTGTCCGACCCTCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_tabescens_CMW31118_China ??????????????????????ATGATCACTGGTACCTCCCAAGCTGATTGTGCCATCCTTATCATTGCTGGTGGTACTGGTGAATTCGAAGCCGGTATCTCCAAGGATGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTCCGACATTTGTCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGACAACATGTTGGAGGAGTCCGCCAAGTAAGTCATTACCATATTATGAGCGATGCGGCGGCTTAACGTTATTGAAAGTATGCCATGGTACAAGGGCTGGACGAAGGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCTATTGATGCCATTGAGCCCCCTGTCCGACCCTCCGACAAGCCTCTTCGTCTTCCTCTCC????????????????????--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_tabescens_CMW31119_Italy ???????????????????????TGATCACTGGTACCTCCCAGGCTGATTGTGCCATCCTTATCATTGCTGGTGGTACTGGTGAATTCGAAGCCGGTATCTCCAAGGACGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTTCGCGAAGTCCGACATTTATCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGACAATATGTTGGAGGAGTCCGCCAAGTAAGTCATTACCATATTATGAGCGATGCGGCGGCTTAACGTTGTTGAAAGCATGCCATGGTACAAGGGCTGGACGAAGGAGACCAAGGCTGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCTATTGATGCCATTGAGCCCCCTGTCCGACCCTCCGACAAGCCTCTCCGTCTTCCTCTCC????????????????????--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_tabescens_CMW31120_Italy ??????????????????GAACATGATCACTGGTACCTCCCAGGCTGATTGTGCCATCCTTATCATTGCTGGTGGTACTGGTGAATTCGAAGCCGGTATCTCCAAGGACGGTCAGACCCGAGAGCACGCCCTTCTTGCCTTCACTCTTGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGAACCCTACCCCATCGCTTTTTCTTCCGCGAAGTCCGACATTTATCTTAGTGGAGTGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAATCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGACAATATGTTGGAGGAGTCCGCCAAGTAAGTCATTACCATATTATGAGCGATGCGGCGGCTTAACGTTGTTGAAAGCATGCCATGGTACAAGGGCTGGACGAAGGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCTATTGATGCCATTGAGCCCCCTGTCCGACCCTCCGACAAGCCTCTCCGTCTTCCTCTCC????????????????????--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_mellea_CMW31171 ???????????????????AACATGATCACCGGTACCTCCCAGGCTGATTGTGCCATTCTCATCATTGCTGGCGGAACTGGTGAGTTCGAAGCCGGTATCTCCAAGGACGGGCAGACCCGAGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTCGCCGTCAACAAGATGGACACCACCAAGGTACGGGATCTGCTGTTTCAGCTTTTCTTTAGTCAAATCTGATTGTTATCTCAGTGGAGCGAGGACCGATTCAATGAAATTGTCAAGGAAACCTCTACCTTCATCAAGAAGGTCGGCTACAACCCCAAGGCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGATAACATGTTGGAGGAGTCCGCCAAGTACGTCCTTACTCAACTCTGATCCGTACTGGGTCTGAACGTTCTCTGTAGCATGCCATGGTACAAGGGCTGGACCAAGGAGACTAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCCATTGACGCCATTGAACCCCCTGTTCGTCCCTCCGACAAGCCTCTCCGTCTTCCTCTCCAGGACGTCTACAAGATCG??--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_mellea_CMW31172 ?????????????????????CATGATCACCGGTACCTCGCAGGCTGATTGTGCCATTCTCATCATCGCTGGTGGAACTGGTGAGTTCGAAGCCGGTATCTCCAAGGACGGGCAGACCCGAGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGGGATCTGCTGTTTCAGTTT---TTTAGTCAAATATGATTGTTATCTCAGTGGAGCGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCTACCTTCATCAAGAAGGTCGGCTACAACCCCAAGGCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGATAACATGTTGGAGGAGTCCGCCAAGTACGTCCTTACTTAACTATGATCCGTACTGTAACTTAACGTTCTCTGTAGCATGCCATGGTACAAGGGTTGGACCAAGGAGACTAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCCATTGACGCCATTGAACCCCCTGTTCGTCCCTCCGACAAGCCTCTCCGCCTTCCTCTCC????????????????????--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Armillaria_mellea_CMW31161 ??????????????????????ATGATCACCGGTACCTCGCAGGCTGATTGTGCCATTCTCATCATCGCTGGTGGAACTGGTGAGTTCGAAGCCGGTATCTCCAAGGACGGGCAGACCCGAGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACCAAGGTACGGGATCTGCTGTTTCAGTTT---TTTAGTCAAATATGATTGTTATCTCAGTGGAGCGAGGACCGATTCAACGAAATCGTCAAGGAAACCTCTACCTTCATCAAGAAGGTCGGCTACAACCCCAAGGCTGTTGCTTTCGTCCCCATCTCTGGATGGCACGGTGATAACATGTTGGAGGAGTCCGCCAAGTACGTCCTTACTTAACTATGATCCGTACTGTAACTTAACGTTCTCTGTAGCATGCCATGGTACAAGGGTTGGACCAAGGAGACTAAGGCCGGTGTCGTCAAGGGCAAGACTCTCCTCGATGCCATTGACGCCATTGAACCCCCTGTTCGTCCCTCCGACAAGCCTCTCCGCCTTCCTCTCCAGGA????????????????--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN TREES; Title 'Trees from "Fig1_EF1a.nex"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Armillaria_tabescens_HQ285907_HAt2S5_Ukraine, [1] 2 Armillaria_tabescens_HQ285906_HAt1S5_Ukraine, [2] 3 Armillaria_tabescens_HQ285908_HAt5S3_Ukraine, [3] 4 Armillaria_tabescens_JF313111_OOI210_USA_Georgia, [4] 5 Armillaria_tabescens_JF313113_ATMUS2_USA_South, [5] 6 Armillaria_tabescens_FJ618674_PT89_84_Italy, [6] 7 Armillaria_tabescens_FJ618658_PT84_12_France, [7] 8 Armillaria_tabescens_JF313112_OOI99_USA_Georgia, [8] 9 Armillaria_tabescens_AB510805_96_3_3_Japan, [9] 10 Armillaria_tabescens_AB510806_2002_06_03_Japan, [10] 11 Armillaria_tabescens_AB539514_02_26_Japan, [11] 12 Armillaria_tabescens_AB510804_96_1_8_Japan, [12] 13 Armillaria_tabescens_JF746930_ET4_France_Gers, [13] 14 Armillaria_tabescens_JF746929_ET3_France_Puy_de_Dome, [14] 15 Armillaria_tabescens_CMW31118_China, [15] 16 Armillaria_tabescens_CMW31119_Italy, [16] 17 Armillaria_tabescens_CMW31120_Italy, [17] 18 Armillaria_mellea_CMW31171, [18] 19 Armillaria_mellea_CMW31172, [19] 20 Armillaria_mellea_CMW31161; TREE Figure1a_TEF = (((((1,6),((9,(11,(12,15))),10)),((((((2,3),7),14),13),17),16)),((4,8),5)),(18,(19,20))); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1084; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1084; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1084; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1411477990022; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4850097752276179137; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6546191080301787961; mqVersion 301; checksumv 0 3 1574256557 null getNumChars 1084 numChars 1084 getNumTaxa 20 numTaxa 20 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 254766.0 sumSquares -8.30103483316929E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;