#NEXUS [written Wed Nov 05 11:39:13 PST 2014 by Mesquite version 2.75 (build 566) at dhcp-206-87-194-136.ubcsecure.wireless.ubc.ca/206.87.194.136] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=52; TAXLABELS Acystopteris_taiwaniana_4870_c2_3_4_6_ Acystopteris_tenuisecta_4831_Tai_c1_4_6_ Cystopteris_bulbifera_5836_Arz_c1_5_7_627 Cystopteris_fragilis_5851_Ut_c10_576 Cystopteris_fragilis_5951_Col_c11_593 Cystopteris_fragilis_6380_Arg_c4_588_short Cystopteris_tasmanica_6379_NZ_c1_603 Cystopteris_bulbifera_6116_On_c12_ Cystopteris_fragilis_5316_CR_c1_2_9_ Cystopteris_fragilis_5840_Swd_c2_4_ Cystopteris_fragilis_5840_Swd_c6_8_10_ Cystopteris_fragilis_5851_Ut_c1_2_12_13_ Cystopteris_fragilis_5851_Ut_c7_11_14_16_ Cystopteris_fragilis_5951_col_c4_5_8_12_13_17_18_20_22_23_ Cystopteris_fragilis_5951_col_c6_ Cystopteris_fragilis_6380_Arg_c1_ Cystopteris_fragilis_7009_Iceland_c10_15_ Cystopteris_fragilis_7009_Iceland_c7_12_13_14_16_ Cystopteris_fragilis_7248_Switz_c2_ Cystopteris_fragilis_7248_Switz_c4_5_6_ Cystopteris_fragilis_7625_Taiwan_c1_ Cystopteris_fragilis_7625_Taiwan_c2_4_ Cystopteris_montana_5839_NFD_c1_ Cystopteris_moupinensis_4861_Tai_c4_ Cystopteris_protusa_5838_Mis_c1_ Cystopteris_protusa_5838_Mis_c2_5_ Cystopteris_tenuis_6387_VT_c10_ Cystopteris_tenuis_6387_VT_c1_4_8_14_ Gymnocarpium_dryopteris_5837_Fin_c4_5_6_7_658bp Gymnocarpium_dryopteris_7981_Japan_c16_19_658 Gymnocarpium_jessoense_parvulum_6979_Ont_c1_658 Gymnocarpium_jessoense_parvulum_6979_Ont_c3_c4_658 Gymnocarpium_remotepinnatum_4862_Tai_c3_658 Gymnocarpium_appalachianum_7639_Virg_c2_4_6_10_ Gymnocarpium_appalachianum_7800_Virg_c9_12_ Gymnocarpium_disjunctum_4710_ALSK_c2_ Gymnocarpium_disjunctum_7751_Wash_c2_5_9_13_ Gymnocarpium_disjunctum_7751_Wash_c6_ Gymnocarpium_dryopteris_5837_Fin_c1_2_ Gymnocarpium_dryopteris_7981_Japan_c2_5_10_12_ Gymnocarpium_dryopteris_7981_Japan_c3_6_ Gymnocarpium_dryopteris_8031_Ont_c1_2_7_10_12_ Gymnocarpium_dryopteris_8031_Ont_c6_ Gymnocarpium_jessoense_parvulum_8120_Russia_c1_2_3_7_10_12_ Gymnocarpium_jessoense_parvulum_8120_Russia_c6_8_9_ Gymnocarpium_remotepinnatum_4862_Tai_c4_6_7_ Gymnocarpium_robertianum_7945_Norw_c4_12_13_14_ Gymnocarpium_robertianum_7945_Norw_c5_8_ xCystocarpium_roskamianum_7974_c13_ xCystocarpium_roskamianum_7974_c4_9_10_11_14_593 xCystocarpium_roskamianum_7974_c5_18_19_ xCystocarpium_roskamianum_7974_c6_12_ ; END; BEGIN CHARACTERS; TITLE pos1and2; DIMENSIONS NCHAR=197; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Acystopteris_taiwaniana_4870_c2_3_4_6_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Acystopteris_tenuisecta_4831_Tai_c1_4_6_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTATTCT Cystopteris_bulbifera_5836_Arz_c1_5_7_627 AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAGGACGTTGTAACTGTTCT Cystopteris_fragilis_5851_Ut_c10_576 AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAGGACGTTGTAACTGTTCT Cystopteris_fragilis_5951_Col_c11_593 AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTTCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Cystopteris_fragilis_6380_Arg_c4_588_short AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGA--------------------------------------------- Cystopteris_tasmanica_6379_NZ_c1_603 AAGCGTGGAAGTCTCCGATTAAGGAGCTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGTTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAGGACGTTGTAACTGTTCT Cystopteris_bulbifera_6116_On_c12_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAGGACGTTGTAACTGTTCT Cystopteris_fragilis_5316_CR_c1_2_9_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Cystopteris_fragilis_5840_Swd_c2_4_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Cystopteris_fragilis_5840_Swd_c6_8_10_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAGGACGTTGTAACTGTTCT Cystopteris_fragilis_5851_Ut_c1_2_12_13_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Cystopteris_fragilis_5851_Ut_c7_11_14_16_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAGGACGTTGTAACTGTTCT Cystopteris_fragilis_5951_col_c4_5_8_12_13_17_18_20_22_23_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Cystopteris_fragilis_5951_col_c6_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAGGACGTTGTAACTGTTCT Cystopteris_fragilis_6380_Arg_c1_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Cystopteris_fragilis_7009_Iceland_c10_15_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Cystopteris_fragilis_7009_Iceland_c7_12_13_14_16_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Cystopteris_fragilis_7248_Switz_c2_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAGGACGTTGTAACTGTTCT Cystopteris_fragilis_7248_Switz_c4_5_6_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Cystopteris_fragilis_7625_Taiwan_c1_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCAAGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAGGACGTTGTAACTGTTCT Cystopteris_fragilis_7625_Taiwan_c2_4_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAGGACGTTGTAACTATTCT Cystopteris_montana_5839_NFD_c1_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Cystopteris_moupinensis_4861_Tai_c4_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Cystopteris_protusa_5838_Mis_c1_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAGGACGTTGTAACTGTTCT Cystopteris_protusa_5838_Mis_c2_5_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAGGACGTTGTAACTGTTCT Cystopteris_tenuis_6387_VT_c10_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAGGACGTTGTAACTGTTCT Cystopteris_tenuis_6387_VT_c1_4_8_14_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_dryopteris_5837_Fin_c4_5_6_7_658bp AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_dryopteris_7981_Japan_c16_19_658 AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_jessoense_parvulum_6979_Ont_c1_658 AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_jessoense_parvulum_6979_Ont_c3_c4_658 AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_remotepinnatum_4862_Tai_c3_658 AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCATAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_appalachianum_7639_Virg_c2_4_6_10_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_appalachianum_7800_Virg_c9_12_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_disjunctum_4710_ALSK_c2_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTACGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_disjunctum_7751_Wash_c2_5_9_13_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_disjunctum_7751_Wash_c6_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_dryopteris_5837_Fin_c1_2_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_dryopteris_7981_Japan_c2_5_10_12_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_dryopteris_7981_Japan_c3_6_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_dryopteris_8031_Ont_c1_2_7_10_12_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_dryopteris_8031_Ont_c6_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_jessoense_parvulum_8120_Russia_c1_2_3_7_10_12_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_jessoense_parvulum_8120_Russia_c6_8_9_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_remotepinnatum_4862_Tai_c4_6_7_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_robertianum_7945_Norw_c4_12_13_14_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT Gymnocarpium_robertianum_7945_Norw_c5_8_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT xCystocarpium_roskamianum_7974_c13_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAGGACGTTGTAACTGTTCT xCystocarpium_roskamianum_7974_c4_9_10_11_14_593 AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGCCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT xCystocarpium_roskamianum_7974_c5_18_19_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT xCystocarpium_roskamianum_7974_c6_12_ AAGCGTGGAAGTCTCCGATTAAGGAACTACGGATGCTTCGGTCCACCCAAGTTCGTGTGATTACTGCGCTGAAAGGGCTCTAGAACATAAGCGCGTAAGCGCTCGAGGTCATAAGGATCTGGTAACGAGAGAGTGTTCACGATTGTGGGAGAAGTCAGATTTGAGCAAGCGGATGCCTAAGACGTTGTAACTGTTCT ; END; BEGIN CHARACTERS; TITLE pos3; DIMENSIONS NCHAR=99; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Acystopteris_taiwaniana_4870_c2_3_4_6_ CGAAAGCTAGATGGCTAGACAGTCCTCATGCGTCCAGAGAATACCGATGGTATATCGAATGACTATTTACTCTCTTAAACATTTAACTCCTTGTAGTTG Acystopteris_tenuisecta_4831_Tai_c1_4_6_ CGAAAGCTAGATGGCTAGACAGTCCTCATGCGTCCAGAGAATACCGATGGTATATCGAATGACTATTTACTCTTTTAAACATTTAACTCCTTGTAGTTG Cystopteris_bulbifera_5836_Arz_c1_5_7_627 TGAAAGGTAGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTACTCTCTTAAACATTTAACTCCCTGTAGTTG Cystopteris_fragilis_5851_Ut_c10_576 CGAAAGGTGGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTACTCTCTCAAACATTTGACTCCCTGTAGTTG Cystopteris_fragilis_5951_Col_c11_593 CGAAAGGTGGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTACGCTCTTAAACATTTAACTCCTTGTAGTTG Cystopteris_fragilis_6380_Arg_c4_588_short CGAAAGGTAGATAGCTAGACAGTCCTCATGCGTCCAGAGAACTTCGATGGTATATCGAATTACTATTTACTCTCTTA---------------------- Cystopteris_tasmanica_6379_NZ_c1_603 CGAAAGGTAGATAGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATAACTATTTACGCTCTTAAACATTTAACTCCTTGTAGTTG Cystopteris_bulbifera_6116_On_c12_ TGAAAGGTAGATGGCTAGACAGTCCTCGTGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTACTCTCTTAAACATTTAACTCCCTGTAGTTG Cystopteris_fragilis_5316_CR_c1_2_9_ CGAAAGGTAGATAGCTAGACAGTCCTCATGCGTCCAGAGAACTTCGATGGTATATCGAATTACTATTTACTCTCTTAAACACTTAACTCCTTGTAGTTG Cystopteris_fragilis_5840_Swd_c2_4_ CGAAAGGTGGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTACGCTCTTAAACATTTAACTCCTTGTAGTTG Cystopteris_fragilis_5840_Swd_c6_8_10_ CGAAAGGTAGATGGCTAGACAGTCCTCGTGCGTCCAGAAAACTCCGATGGCATATCGAATGACTATTTACTCTCTTAAACATTTAACTCCCTGTAGTTG Cystopteris_fragilis_5851_Ut_c1_2_12_13_ CGAAAGGTGGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTACGCTCTTAAACATTTAACTCCTTGTAGTTG Cystopteris_fragilis_5851_Ut_c7_11_14_16_ CGAAAGGTAGATAGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTACTCTCTTAAACATTTAACTCCTTGTAGTTG Cystopteris_fragilis_5951_col_c4_5_8_12_13_17_18_20_22_23_ CGAAAGGTGGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTACGCTCTTAAACATTTAACTCCTTGTAGTTG Cystopteris_fragilis_5951_col_c6_ CGAAAGGTGGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTACTCTCTCAAACATTTGACTCCCTGTAGTTG Cystopteris_fragilis_6380_Arg_c1_ CGAAAGGTAGATAGCCAGACAGTCCTCATGCGTCCAGAGAACTTCGATGGTATATCGAATTACTATTTACTCTCTTAAACACTTAACTCCTTGTAGTTG Cystopteris_fragilis_7009_Iceland_c10_15_ CGAAAGGTGGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTACGCTCTTAAACATTTAACTCCTTGTAGTTG Cystopteris_fragilis_7009_Iceland_c7_12_13_14_16_ CGAAAGGTGGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTGCGCTCTTAAACATTTAACTCCTTGTAGTTG Cystopteris_fragilis_7248_Switz_c2_ CGAAAGGTAGATGGCTAGACAGTCCTCGTGCGTCCAGAAAACTCCGATGGCATATCGAATGACTATTTACTCTCTTAAACATTTAACTCCCTGTAGTTG Cystopteris_fragilis_7248_Switz_c4_5_6_ CGAAAGGTGGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTACGCTCTTAAACATTTAACTCCTTGTAGTTC Cystopteris_fragilis_7625_Taiwan_c1_ CGAAAGGTAGATAGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTACTCTCTTAAACATTTAACTCCTTGTAGTTG Cystopteris_fragilis_7625_Taiwan_c2_4_ CGAAAGGTAGATGGCTAGACAGTCCTCATGCGTCCAGAAAACTCCGATGGTATATCGAATGACTATTTACTCTCTTAAACACTTAACTCCCTGTAGTTG Cystopteris_montana_5839_NFD_c1_ CGAAAGGTAGATGGCTAGACAGTCCTCATGCGTTCAGAGAATTCCGATGGTATATCGAATGACTATTTACTCTCTTAAACATTTAACTCCCTGTAGTTG Cystopteris_moupinensis_4861_Tai_c4_ CGAAAGGTAGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTACTCTTTTAAACATTTAACTCCCTGTGGTTG Cystopteris_protusa_5838_Mis_c1_ CGAAAGGTAGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTTCGATGGTATATCGAATGACTATTTACCCTTTTAAACATTTAACTCCCTGTAGTTG Cystopteris_protusa_5838_Mis_c2_5_ CGAAAGGTAGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTTCGATGGTATATCGAATGACTATTTACCCTTTTAAACATTTAACTCCCTGTAGTTG Cystopteris_tenuis_6387_VT_c10_ CGAAAGGTAGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTTCGATGGTATATCGAATGACTATTTACCCTTTTAAACATTTAACTCCTTGTAGTTG Cystopteris_tenuis_6387_VT_c1_4_8_14_ CGAAAGGTGGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTGCGCTCTTAAACATTTAACTCCTTGTAGTTG Gymnocarpium_dryopteris_5837_Fin_c4_5_6_7_658bp CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGCCACTCTCTTAAGTATTAAACTCCTTGTAGTTG Gymnocarpium_dryopteris_7981_Japan_c16_19_658 CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGTCACTCTCTTAAACATTAAACTCCTTGTAGTTG Gymnocarpium_jessoense_parvulum_6979_Ont_c1_658 CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGTCACTCTCTTAAACATTAAACTCCTTGTAGTTG Gymnocarpium_jessoense_parvulum_6979_Ont_c3_c4_658 CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGCTACTCTTTTAAACATTAAACTCCTTGTAGTTG Gymnocarpium_remotepinnatum_4862_Tai_c3_658 CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGCCACTCTTTTAAACATTAAACTCCTTGTAGTTG Gymnocarpium_appalachianum_7639_Virg_c2_4_6_10_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGTCACTCTCTTAAACATTAAACTCCTTGTAGTTG Gymnocarpium_appalachianum_7800_Virg_c9_12_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGTCACTCTTTTAAACATTAAACTCCTTGTAGTTG Gymnocarpium_disjunctum_4710_ALSK_c2_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGCCACTCTCTTAAGTATTAAACTCCTTGTAGTTG Gymnocarpium_disjunctum_7751_Wash_c2_5_9_13_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGCCACTCTCTTAAATATTAAACTCCTTGTAGTTG Gymnocarpium_disjunctum_7751_Wash_c6_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGCCACTCTCTTAAGTATTAAACTCCTTGTAGTTG Gymnocarpium_dryopteris_5837_Fin_c1_2_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGTCACTCTCTTAAACATTAAACTCCTTGTAGTTG Gymnocarpium_dryopteris_7981_Japan_c2_5_10_12_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGCCACTCTCTTAAATATTAAACTCCTTGTAGTTG Gymnocarpium_dryopteris_7981_Japan_c3_6_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGCCACTCTCTTAAGTATTAAACTCCTTGTAGTTG Gymnocarpium_dryopteris_8031_Ont_c1_2_7_10_12_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGTCACTCTCTTAAACATTAAACTCCTTGTAGTTG Gymnocarpium_dryopteris_8031_Ont_c6_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGCCACTCTCTTAAGTATTAAACTCCTTGTAGTTG Gymnocarpium_jessoense_parvulum_8120_Russia_c1_2_3_7_10_12_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGCTACTCTTTTAAACATTAAACTCCTTGTAGTTG Gymnocarpium_jessoense_parvulum_8120_Russia_c6_8_9_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGTCACTCTCTTAAACATTAAACTCCTTGTAGTTG Gymnocarpium_remotepinnatum_4862_Tai_c4_6_7_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGTCACTCTCTTAAACATTAAACTCCTTGTAGTTG Gymnocarpium_robertianum_7945_Norw_c4_12_13_14_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGCCACTCTTTTAAACATTAAACTCCTTGTAGTTG Gymnocarpium_robertianum_7945_Norw_c5_8_ CGAAAGGTAGGCGGCTAGACAGTCCCCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTACCCACTCTCTTAAACATTAAACTCCCTGTAGTTG xCystocarpium_roskamianum_7974_c13_ CGAAAGGTAGATGGCTAGACAGTCCTCGTGCGTCCAGAAAACTCCGATGGCATATCGAATGACTATTTACTCTCTTAAACATTTAACTCCCTGTAGTTG xCystocarpium_roskamianum_7974_c4_9_10_11_14_593 CGAAAGGTGGATGGCTAGACAGTCCTCATGCGTCCAGAGAACTCCGATGGTATATCGAATGACTATTTACGCTCTTAAACATTTAACTCCTTGTAGTTG xCystocarpium_roskamianum_7974_c5_18_19_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGTCACTCTCTTAAACATTAAACTCCTTGTAGTTG xCystocarpium_roskamianum_7974_c6_12_ CGAAAGGTAGATGGCTAGACAGTCCTCAGGCGTCCAGAGAACTCCGATGGTATATCGAATGACTAGCCACTCTCTTAAGTATTAAACTCCTTGTAGTTG ; END; BEGIN CHARACTERS; TITLE noncoding; DIMENSIONS NCHAR=449; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Acystopteris_taiwaniana_4870_c2_3_4_6_ GT-CACTGCCAACTTAACAATAACCTATA-AATTCCCTACT-----------------TATGCGGGGGCTACTCTATTGGGTTTGATGTCTTGTAAACATGTT-GTCTTTGTGGTAAACTGCAGTATGAACTTTACATGCTC-TACTCGTTGAAACGA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGGAGTTATT---------------CATAATACTGTCACAACTGATGCTGTCTAACCTATAGCTTTACCTGAAAGCTATATCTAATGTGATTTATTACATTTCTTTTAGGAGGTA------ACTTCCATTTTAGAATTGCAGAAGGCAATTCCAATTATGCTCTCTCACATGCCTTA----------------------------------------------------------ATCGGTGGACTGGGTGATTTGC Acystopteris_tenuisecta_4831_Tai_c1_4_6_ GT-CACTGCCAACCGAACAATAACCTATA-ATGTCCCTACT-----------------CATGCGGGGGCTACTCTATTGGGTTTGATGTCTTGTAAACATGTT-GTCTTTGTGGTAAACTGCAGTATGAACTTTACATGCTC-TTCTTGTTGAAACGA-ATTTATT-GTCTAAATTAAT----------CAAGGGTGTTTTT---------------CGTAATACTGTCACAACTGATGCTGTCTAACCTATAGCTTAACCTGAAAGCTATATCTAATGTGATTTATTACATTTCTTTTAGGAGGTA------ACTTCCATTTTAGAAT---AGAAGGCAATTCCAATCATGCTCTCTCACATGCCTTA----------------------------------------------------------ATCGGTGGACTGGGTGGTGTGC Cystopteris_bulbifera_5836_Arz_c1_5_7_627 GTACACTGCTAACTTAACAAAAACCTAAA-AACATCCTACT-----------------AATGCCGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAACTGCAGTATGACCTTTACATGCTC-TACTCATTGAAACAA-CTTTTTTTGTCTAAATTAATTTATTCTAGTCTAGGGAATTATTTG-------------CAAATTACTGTCACAACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTAT-----------TAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTAGTTCCAGTCATGCTCTCTCAGCTGCCTTA----------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_5851_Ut_c10_576 GTACACTGCTAACTTAACAAAAACCTTTA-AACATCCTACT-----------------AATGTGGTGGCTATTTTATTG---------CCCTGTAAACATGTTGGTCTTTGTGGTAAATTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-TTTTTTTTGTCTAAATTAATTTATTCT----------------------------------------------ACTGATGCTGTCTAACCTTTA-------------------------------TATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTAGTTTCAGTCATGCTCGCTCAAATTCCTTAA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_5951_Col_c11_593 GTACACTGCTAACTTAACAAAAACCTTTA-AACGTCCTACT-----------------AA---GGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAATTGCAGTATGAACATTACATGCTC-TATTCATTGAAACAA-ATT----------AATTAATTTATTCA----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTGGTTTCAGTCAAGCTCGCTCAAATTCCTTAA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_6380_Arg_c4_588_short GTACACTGCTAACTTAACAAAAACCTTTA-AACATCCTACT-----------------AATGTGGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAACTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAATTTTTTTTTGTCTAAATTAATTTATTCT----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACATTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCTCGAGTTAGTTTCAGTCATGCTTGCTCAAATTCCTTAGCATTTATTTTACCTATAGATACCATAAATGTAATTTTGAAATTTGTATTTTTAGACTAACGGTGGACTGG--------- Cystopteris_tasmanica_6379_NZ_c1_603 GTACACTGCTAACTTAACCAAAACCT-AA-AACATCCTACT-----------------AATGTGGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAGCTGCAGTATGAACATTACATGCTC-TAGTCATTGAAACAA--TTTTTTTGTCTAAATTAATTTATTCT----------------------------------------------ACTGATGCTGTCTAATTTTTAGCCT-AACTGAAAGCTACATCTAATGTGATTTATTACACTTTTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTAGTTTCAGTCATGCTCGCTCAAATTCCTCT----------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_bulbifera_6116_On_c12_ GTACACTGCTAACTTAACAAAAACCTAAA-AACATCCTACT-----------------AATGCCGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAACTGCAGTATGAACTTTACATGCTC-TACTCATTGAAACAA-CTTTTTTTGTCTAAATTAATTTATTCTAGTCTAGGGAATTATTTG-------------CAAATTACTGTCACAACTGATGCTGTCTAACCTTAAGCTT-ACCTGAAAGCTACATCTAATGTGATTTAT-----------TAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTAGTTCCAGTCATGCTCTCTCAGCTGCCTTA----------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_5316_CR_c1_2_9_ GTACACTGCTAACTTAACAAAAACCTTTA-AACATCCTACT-----------------AATGTGGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAACTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAATTTTTTTTTGTCTAAATTAATTTATTCT----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACATTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCTCAAGTTAGTTTCAGTCATGCTTGCTCAAATTCCTTAGCATTTATTTTACCTATAGATACCATAAATGTAATTTTGAAATTTGTATTTTTAAACTAACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_5840_Swd_c2_4_ GTACACTGCTAACTTCACAAAAACCTTTA-AACGTCCTACT-----------------AA---GGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAATTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-ATT----------AATTAATTTATTCA----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTGGTTTCAGTCAAGCTCGCTCAAATTCCTTAA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_5840_Swd_c6_8_10_ GTAGACTGCTAACTTAACCAAAACCTAAA-AACATCCTACT-----------------AATGTGGTGGCTATT---TTG---------CCTTGTTAACATGTTGGTCTTTGTGGTAAACTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-TTTTTTTTGTCTAAATTAATTTATTCT----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTCGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTAGTTTCAGTCATGGTCGCTCAAATTCCTTCA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_5851_Ut_c1_2_12_13_ GTACACTGCTAACTTAACAAAAACCTTTA-AACGTCCTACT-----------------AA---GGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAATTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-ATT----------AATTAATTTATTCA----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTGGTTTCAGTCAAGCTCGCTCAAATTCCTTAA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_5851_Ut_c7_11_14_16_ GTACACTGCTAACTTCACAAAAACCTTTAAAACATCCTACT-----------------AATGTGGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAACTGCAGTACGAACATTACATTCTC-TACTCATTGAAACAA-ATTTTTTTGTCTAAATTTATTTATTCT----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTACAATTGCAGAAGGCAGTTTCAGTCAAGCTCGCTCAAATTCCTTAA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_5951_col_c4_5_8_12_13_17_18_20_22_23_ GTACACTGCTAACTTCACAAAAACCTTTA-AACGTCCTACT-----------------AA---GGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAATTGCAGTATGAACATTACATGCTC-TATTCATTGAAACAA-ATT----------AATTAATTTATTCA----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTGGTTTCAGTCAAGCTCGCTCAAATTCCTTAA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_5951_col_c6_ GTACACTGCTAACTTAACAAAAACCTTTA-AACATCCTACT-----------------AATGTGGTGGCTATTTTATTG---------CCCTGTAAACATGTTGGTCTTTGTGGTAAATTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-TTTTTTTTGTCTAAATTAATTTATTCT----------------------------------------------ACTGATGCTGTCTAACCTTTA-------------------------------TATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTAGTTTCGGTCATGCTCGCTCAAATTCCTTAA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_6380_Arg_c1_ GTACACTGCTAACTTAACAAAAACCTTCA-AACATCCTACT-----------------AATGTGGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAACTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-TTTTTTTTGTCTAAATTAATTTATTCT----------------------------------------------GCTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACATTTCTTGTAGGAGGTAACTTCCACTTCCACTTTAGAATTGCTCAAGTTAGTTTCAGTCATGCTTGCTCAAATTCCTTAGCATTTATTTTACCTATAGATACCATAAATGTAATTTTGAAATTTGTATTTTTAAACTAACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_7009_Iceland_c10_15_ GTACACTGCTAACTTCACAAAAACCTTTA-AACGTCCTACT-----------------AA---GGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAATTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-ATT----------AATTAATTTATTCA----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTGGTTTCAGTCAAGCTCGCTCAAATTCCTTAA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_7009_Iceland_c7_12_13_14_16_ GTACACTGCTAACTTCACAAAAACCTTTA-AACGTCCTACT-----------------AA---GGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAATTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-ATT----------AATTAATTTATTCA----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTGGTTTCAGTCAAGCTCGCTCAAATTCCTTAA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_7248_Switz_c2_ GTAGACTGCTAACTTAACCAAAACCTAAA-AACATCCTACT-----------------AATGTGGTGGCTATT---TTG---------CCTTGTTAACATGTTGGTCTTTGTGGTAAACTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-TTTTTTTTGTCTAAATTAATTTATTCT----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTCGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTAGCTTCAGTCATGGTCGCTCAAATTCCTTCA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_7248_Switz_c4_5_6_ GTACACTGCTAACTTCACAAAAACCTTTA-AACGTCCTACT-----------------AA---GGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAATTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-ATT----------AATTAATTTATTCA----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTGGTTTCAGTCAAGCTCGCTCAAATTCCTTAA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_7625_Taiwan_c1_ GTACACTGCTAACTTAACAAAAACCTTCA-AACATCCTACT-----------------AATGTGGTGGCTGTTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAACTGCAGTATGAACATTACATTCTC-TACTCATTGAAACAA-TTTTTTTTGTCTAAATTAATTTATTCT----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTACAATTGCAGAAGGCAGTTTCAGTCATGCTCGCTCAAATTCCTTA----------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Cystopteris_fragilis_7625_Taiwan_c2_4_ GTACACTGCTAACTTAA--------TTTA-AACATCCTACT-----------------AATGTGGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAACTGCAGTATGAACATTACCTGCTC-TACTCATTGAAACAA-ATTTTTTTGTCTAAATTAATTTATTCT----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTTTTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCACAAGTTAGTTTCAGTCATGCTCGCTCAAATTCCTTAGCATTTATTTTACCTATAGATACCATAAATGTAATTTTGAAATTTGTATTTTTAAACTAACGGTGGACTGGGTTGTTTGC Cystopteris_montana_5839_NFD_c1_ GTACACTGCCAACTTAACCAAAACCTAAA-AACACCCTACT-----------------AATGTGGTGGCTATTTTATTG---------CCTTGTAAACATGTT-GTCTTTGTGGTAAACTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-ATTTTTTTGTCTAAATTAATTTAATCTAGTCTAAGGAGTTATTTG-------------CAAATTGCTGTCACAACTGATGCTGTCTAACCTTGAACTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTAGTTCCAGTCATGCGCTCTCAAATACCTTAA---------------------------------------------------------AACGGTGGACTTGGTTGTTTGC Cystopteris_moupinensis_4861_Tai_c4_ GTACACTGCTAACTTAACAAAAACCCAAA-AACACCCTACT-----------------AATGTGGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAACTGCAGTATGAACATTACATGCTC-TACTAATTGAAACAA-TTTTTTTTGTCTAAATTAATTTATTCTAGTCTAGGGAATTATTTG-------------CAAATTACTGTCACAACTGATGCTGTCTAACCTTTAGCTT-ACTTGAAAGCTACATCTAATGTGATTTTTTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAAAATTGCAGAAGGTAGTTCCAGTCATGGTTTTTCAGCTGCCTTA----------------------------------------------------------AACGGTGGACTGGGCTGTTTGC Cystopteris_protusa_5838_Mis_c1_ GTACACTGCTAACTTAA--------TTTA-AACATCCTACT-----------------AATGTGGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAACTGCAGTATGAACATTACATGCTC-TACTCGTTGAAACAA-ATTTTTTTGTCTAAATTAATTTATTCT----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTAGTTTCAGTCATGCTCTCTCAAATGCCTTAA---------------------------------------------------------AA--GTGGACTGGGTTGTTTGC Cystopteris_protusa_5838_Mis_c2_5_ GTACACTGCTAACTTAA--------TTT------------------------------AATGTGGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAACTGCAGTATGAACATTACATGCTC-TTCTCATTGAAACAA-TTTTTTTTGTCTAAATTAATTTATTCT----------------------------------------------TCTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATCACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTAGTTTCAGTCATGCTCTCTCAAATGCCTTA----------------------------------------------------------AA--GTGGACTGGGTTGTTTGC Cystopteris_tenuis_6387_VT_c10_ GTACACTGCTAACTTAA--------TTTA-AACATCCTACT-----------------AATGTGGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAACTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-ATTTTTTTGTCTAAATTAATTTATTCT----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTAGTTTCAGTCATGCTCTCTCA?ATGCCTTA----------------------------------------------------------AA--GTGGACTGGGTTGTTTGC Cystopteris_tenuis_6387_VT_c1_4_8_14_ GTACACTGCTAACTTCACAAAAACCTTTA-AACGTCCTACT-----------------AA---GGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAATTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-ATT----------AATTAATTTATTCA----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTGGTTTCAGTCAAGCTCGCTCAAATTCCTTAA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC Gymnocarpium_dryopteris_5837_Fin_c4_5_6_7_658bp GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTATGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGTAATTATTTGCAAAGTAGTTGTTCAAAATACTGTCATGACTGATGATGTCTAACGTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACTTTTCTTTTAGGAGGTA------ACTTCCATTTTGGAATTGCAAAAGGCAGCTCCAATCATGCTCGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_dryopteris_7981_Japan_c16_19_658 GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTAAGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTACATTAATTTAATCTAGTCAAGGTAATTATTTGCGAAGTAGTTGTTCAAAATACTGTCACAACTGATGCTGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACATTTCTTTTAGGAGGTA------ACTTCCATTTTAGAATTGCAAAAGGCAGTTCCAATCATGCTTGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_jessoense_parvulum_6979_Ont_c1_658 GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTAAGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTACATTAATTTAATCTAGTCAAGGTAATTATTTGCGAAGTAGTTGTTCAAAATACTGTCACAACTGATGCTGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACATTTCTTTTAGGAGGTA------ACTTCCATTTTAGAATTGCAAAAGGCAGTTCCAATCATGCTTGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_jessoense_parvulum_6979_Ont_c3_c4_658 GTACACTGCCAACTTAACAATAACCTATA-AGCACCCTACT-----------------TACGTGGTGTCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTATGAACTTTACATGCTC-AACTCATTAAAACAA-TTTTATT-GTCTAAATTAATTTAATCTAGTCAGGGTAATTATTTGCAAAGTAGTTATTCAAAATACTGTCACAACTGATGCTGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACTTTCCTTTTAGGAGGTA------ACTTCCATTTTAGAATTGCAAAAGGCAGTTCCAATCATGCTCACTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_remotepinnatum_4862_Tai_c3_658 GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGTCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTATGAACTTTACATGCTC-AACTCATTAAAACAA-TTTTATT-GTCTAAATTAATTTAATCTAGTCAGGGTAATTATTTGCAAAGTAGTTATTCAAAATACTGTCACAATTGATGCTGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACTTTCCTTTTAGGAGGTA------ACTTCCATTTTAGAATTGCAAAAGGCAGTTCCAATCATGCTCGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_appalachianum_7639_Virg_c2_4_6_10_ GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATGCCTTATAAACATGTT-GTCTTTGTGGTAAACTCCAGTATGAACTTTACTTGCTC-AACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGTAATTATTTGCAAAGTAGTTGTTCAAAATACTGTCACAACTGATGCTGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACATTTCTTTTAGGAGGTA------ACTTCCATTTTAGAATTGCAAAAGGCAGTTCCAATCATGCTTGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_appalachianum_7800_Virg_c9_12_ GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTAAGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGTAATTATTTGCAAAGTAGTTATTCAAAATACTGTCACAACTGATGCTGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACATTTCTTTTAGGAGGTA------ACTTCCATTTTAGAATTGCAAAAGGCAGTTCCAATCATGCTTGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_disjunctum_4710_ALSK_c2_ GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTATGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGTAATTATTTGCAAAGTAGTTGTTCAAAATACTGTCATGACTGATGATGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACTTTTCTTTTAGGAGGTA------ACTTCCATTTTGGAATTGCAAAAGGCAGCTCCAATCATGCTCGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_disjunctum_7751_Wash_c2_5_9_13_ GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGTGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACACGTT-GTCTTTGTGGTAAACTCCAGTATGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGTAATTATTTGCAAAGTAGTTGTTCAAAATACTGTCATGACTGATGATGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACTTTTCTTTTAGGAGGTA------ACTTCCATTTTGGAATTGCAAAAGGCAGCTCCAATCATGCTCGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_disjunctum_7751_Wash_c6_ GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTATGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGTAATTATTTGCAAAGTAGTTGTTCAAAATACTGTCATGACTGATGATGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACTTTTCTTTTAGGAGGTA------ACTTCCATTTTGGAATTGCAAAAGGCAGCTCCAATCATGCTCGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_dryopteris_5837_Fin_c1_2_ GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATCGGGTGTGATCCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTAAGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGTAATTATTTGCAAAGTAGTTGTTCAAAATACTGTCACAACTGATGCTGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACATTTCTTTTAGGAGGTA------ACTTCCATTTTAGAATTGCAAAAGGCAGTTCCAATCATGCTTGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_dryopteris_7981_Japan_c2_5_10_12_ GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTATGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGTAATTATTTGCAAAGTAGTTGTTCAAAATACTGTCATGACTGATGATGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACTTTTCTTTTAGGAGGTA------ACTTCCATTTTGGAATTGCAAAAGGCAGCTCCAATCATGCTCGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_dryopteris_7981_Japan_c3_6_ GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTATGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGTAATTATTTGCAAAGTAGTTGTTCAAAATACTGTCATGACTGATGATGTCTAACGTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACTTTTCTTTTAGGAGGTA------ACTTCCATTTTGGAATTGCAAAAGGCAGCTCCAATCATGCTCGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_dryopteris_8031_Ont_c1_2_7_10_12_ GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATCCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTAAGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGTAATTATTTGCAAAGTAGTTGTTCAAAATACTGTCACAACTGATGCTGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACATTTCTTTTAGGAGGTA------ACTTCCATTTTAGAATTGCAAAAGGCAGTTCCAATCATGCTTGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_dryopteris_8031_Ont_c6_ GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTATGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGTAATTATTTGCAAAGTAGTTGTTCAAAATACTGTCATGACTGATGATGTCTAACGTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACTTTTCTTTTAGGAGGTA------ACTTCCATTTTGGAATTGCAAAAGGCAGCTCCAATCATGCTCGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_jessoense_parvulum_8120_Russia_c1_2_3_7_10_12_ GTACACTGCCAACTTAACAATAACCTATA-AGCACCCTACT-----------------TACGTGGTGTCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTATGAACTTTACATGCTC-AACTCATTAAAACAA-TTTTATT-GTCTAAATTAATTTAATCTAGTCAGGGTAATTATTTGCAAAGTAGTTATTCAAAATACTGTCACAACTGATGCTGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACTTTCCTTTTAGGAGGTA------ACTTCCATTTTAGAATTGCAAAAGGCAGTTCCAATCATGCTCACTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_jessoense_parvulum_8120_Russia_c6_8_9_ GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTAAGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTACATTAATTTAATCTAGTCAAGGTAATTATTTGCGAAGTAGTTGTTCAAAATACTGTCACAACTGATGCTGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACATTTCTTTTAGGAGGTA------ACTTCCATTTTAGAATTGCAAAAGGCAGTTCCAATCATGCTTGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_remotepinnatum_4862_Tai_c4_6_7_ GTACACTGCGAACTTAACAAAAACCTTTA-AACACCCTACT-----------------TAAGCGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCCTTGTGGCAAACTCCAGTATGAACTTTACATGCTCTAACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGTAATTATTTGCAAAGTAGTTGTTCAAAATACTGTCACAACTGATGCTGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACATTTCTTTTAGGAGGTA------ACTTCCATTTTAGAATTGCAAAAGGCAGTTCCAATCATGCTCGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_robertianum_7945_Norw_c4_12_13_14_ GTACACTGCGAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTATGAACTTTACATGCTC-AACTCATTAAAACAA-TTTTATT-GTCTAAATTAATTTAATCTAGTCAGGGTAATTATTTGCAAAGTAGTAGTTCAAAATACTGTCACAACTGATGCTGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACTTTTCTTTTAGGAGGTA------ACTTCCATTTTAGAATTGCAAAAGGCAGTTCCAATCATGCTCGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC Gymnocarpium_robertianum_7945_Norw_c5_8_ GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACTTGTGCGGACACCCTACTTATGCGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTATGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTTATCTAGTCAAGGTAATTATTTGCAAAGT---AGTTCAAAATACTGTCACAACTGATGCTTTCTAACCTTTAGCTT-ACCTGAAAGCTACACCTAATGTGATTTATTACATTTCTTTTAGGAGGTA------ACTTCCATTTTAGGATTGCAAAAGGCAGTTCCAATCGTGCTTGCTCACATCCCTTA----------------------------------------------------------ATTGGTGGACTGGGTTGTCTGC xCystocarpium_roskamianum_7974_c13_ GTAGACTGCTAACTTAACCAAAACCTAAA-AACATCCCACT-----------------AATGTGGTGGCTATT---TTG---------CCTTGTTAACATGTTGGTCTTTGTGGTAAACTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-TTTTTTTTGTCTAAATTAATTTATTCT----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTCGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTAGTTTCAGTCATGGTCGCTCAAATTCCTTCA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC xCystocarpium_roskamianum_7974_c4_9_10_11_14_593 GTACACTGCTAACTTCACAAAAACCTTTA-AACGTCCTACT-----------------AA---GGTGGCTATTTTATTG---------CCTTGTAAACATGTTGGTCTTTGTGGTAAATTGCAGTATGAACATTACATGCTC-TACTCATTGAAACAA-ATT----------AATTAATTTATTCA----------------------------------------------ACTGATGCTGTCTAACCTTTAGCTT-ACCTGAAAGCTACATCTAATGTGATTTATTACACTTCTTGTAGGAGGTA------ACTTCCACTTTAGAATTGCAGAAGGTGGTTTCAGTCAAGCTCGCTCAAATTCCTTAA---------------------------------------------------------AACGGTGGACTGGGTTGTTTGC xCystocarpium_roskamianum_7974_c5_18_19_ GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATCCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTAAGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGTAATTATTTGCAAAGTAGTTGTTCAAAATACTGTCACAACTGATGCTGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATTTATTACATTTCTTTTAGGAGGTA------ACTTCCATTTTAGAATTGCAAAAGGCAGTTCCAATCATGCTTGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC xCystocarpium_roskamianum_7974_c6_12_ GTACACTGCCAACTTAACAATAACCTATA-AACACCCTACT-----------------TATGCGGTGGCTACTTTATTGGGTGTGATGCCTTGTAAACATGTT-GTCTTTGTGGTAAACTCCAGTATGAACTTTACATGCTC-AACTCATTAAAACAA-ATTTATT-GTCTAAATTAATTTAATCTAGTCAAGGTAATTATTTGCAAAGTAGTTGTTCAAAATACTGTCATGACTGATGATGTCTAACCTTTAGCTT-ACATGAAAGCTACACCTAATGTGATCTATTACTTTTCTTTTAGGAGGTA------ACTTCCATTTTGGAATTGCAAAAGGCAGCTCCAATCATGCTCGCTCACATCCCTTA----------------------------------------------------------ATCGGTGGACTGGGTTGTCTGC ; END; BEGIN CHARACTERS; TITLE indels; DIMENSIONS NCHAR=28; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1"; MATRIX Acystopteris_taiwaniana_4870_c2_3_4_6_ 100011000111001001??000101?0 Acystopteris_tenuisecta_4831_Tai_c1_4_6_ 100011000111001101??000111?0 Cystopteris_bulbifera_5836_Arz_c1_5_7_627 0000110010110000001?011101?0 Cystopteris_fragilis_5851_Ut_c10_576 00001100101100001???1?010010 Cystopteris_fragilis_5951_Col_c11_593 00001110101101?01???01010010 Cystopteris_fragilis_6380_Arg_c4_588_short 00001100101000001???01010000 Cystopteris_tasmanica_6379_NZ_c1_603 00101100101?10001???010101?0 Cystopteris_bulbifera_6116_On_c12_ 0000110010110000001?011101?0 Cystopteris_fragilis_5316_CR_c1_2_9_ 00001100101000001???01010000 Cystopteris_fragilis_5840_Swd_c2_4_ 00001110101101?01???01010010 Cystopteris_fragilis_5840_Swd_c6_8_10_ 00001101101100001???01010010 Cystopteris_fragilis_5851_Ut_c1_2_12_13_ 00001110101101?01???01010010 Cystopteris_fragilis_5851_Ut_c7_11_14_16_ 00000100101100001???01010010 Cystopteris_fragilis_5951_col_c4_5_8_12_13_17_18_20_22_23_ 00001110101101?01???01010010 Cystopteris_fragilis_5951_col_c6_ 00001100101100001???1?010010 Cystopteris_fragilis_6380_Arg_c1_ 00001100101100001???01000000 Cystopteris_fragilis_7009_Iceland_c10_15_ 00001110101101?01???01010010 Cystopteris_fragilis_7009_Iceland_c7_12_13_14_16_ 00001110101101?01???01010010 Cystopteris_fragilis_7248_Switz_c2_ 00001101101100001???01010010 Cystopteris_fragilis_7248_Switz_c4_5_6_ 00001110101101?01???01010010 Cystopteris_fragilis_7625_Taiwan_c1_ 00001100101100001???010101?0 Cystopteris_fragilis_7625_Taiwan_c2_4_ 01001100101100001???01010000 Cystopteris_montana_5839_NFD_c1_ 0000110011110000001?01010010 Cystopteris_moupinensis_4861_Tai_c4_ 0000110010110000001?010101?0 Cystopteris_protusa_5838_Mis_c1_ 01001100101100001???01010011 Cystopteris_protusa_5838_Mis_c2_5_ 0101??00101100001???010101?1 Cystopteris_tenuis_6387_VT_c10_ 01001100101100001???010101?1 Cystopteris_tenuis_6387_VT_c1_4_8_14_ 00001110101101?01???01010010 Gymnocarpium_dryopteris_5837_Fin_c4_5_6_7_658bp 00001100011100100000010101?0 Gymnocarpium_dryopteris_7981_Japan_c16_19_658 00001100011100100000010101?0 Gymnocarpium_jessoense_parvulum_6979_Ont_c1_658 00001100011100100000010101?0 Gymnocarpium_jessoense_parvulum_6979_Ont_c3_c4_658 00001100011100100000010101?0 Gymnocarpium_remotepinnatum_4862_Tai_c3_658 00001100011100100000010101?0 Gymnocarpium_appalachianum_7639_Virg_c2_4_6_10_ 00001100011100100000010101?0 Gymnocarpium_appalachianum_7800_Virg_c9_12_ 00001100011100100000010101?0 Gymnocarpium_disjunctum_4710_ALSK_c2_ 00001100011100100000010101?0 Gymnocarpium_disjunctum_7751_Wash_c2_5_9_13_ 00001100011100100000010101?0 Gymnocarpium_disjunctum_7751_Wash_c6_ 00001100011100100000010101?0 Gymnocarpium_dryopteris_5837_Fin_c1_2_ 00001100011100100000010101?0 Gymnocarpium_dryopteris_7981_Japan_c2_5_10_12_ 00001100011100100000010101?0 Gymnocarpium_dryopteris_7981_Japan_c3_6_ 00001100011100100000010101?0 Gymnocarpium_dryopteris_8031_Ont_c1_2_7_10_12_ 00001100011100100000010101?0 Gymnocarpium_dryopteris_8031_Ont_c6_ 00001100011100100000010101?0 Gymnocarpium_jessoense_parvulum_8120_Russia_c1_2_3_7_10_12_ 00001100011100100000010101?0 Gymnocarpium_jessoense_parvulum_8120_Russia_c6_8_9_ 00001100011100100000010101?0 Gymnocarpium_remotepinnatum_4862_Tai_c4_6_7_ 00001100010100100000010101?0 Gymnocarpium_robertianum_7945_Norw_c4_12_13_14_ 00001100011100100000010101?0 Gymnocarpium_robertianum_7945_Norw_c5_8_ 00001000011100100001010101?0 xCystocarpium_roskamianum_7974_c13_ 00001101101100001???01010010 xCystocarpium_roskamianum_7974_c4_9_10_11_14_593 00001110101101?01???01010010 xCystocarpium_roskamianum_7974_c5_18_19_ 00001100011100100000010101?0 xCystocarpium_roskamianum_7974_c6_12_ 00001100011100100000010101?0 ; END; BEGIN TREES; Title 'gapCp_Cystopteridaceae_alleletree_3.3b.best.tre'; LINK Taxa = Taxa; TRANSLATE 1 Acystopteris_taiwaniana_4870_c2_3_4_6_, 2 Acystopteris_tenuisecta_4831_Tai_c1_4_6_, 3 Cystopteris_bulbifera_5836_Arz_c1_5_7_627, 4 Cystopteris_fragilis_5851_Ut_c10_576, 5 Cystopteris_fragilis_5951_Col_c11_593, 6 Cystopteris_fragilis_6380_Arg_c4_588_short, 7 Cystopteris_tasmanica_6379_NZ_c1_603, 8 Cystopteris_bulbifera_6116_On_c12_, 9 Cystopteris_fragilis_5316_CR_c1_2_9_, 10 Cystopteris_fragilis_5840_Swd_c2_4_, 11 Cystopteris_fragilis_5840_Swd_c6_8_10_, 12 Cystopteris_fragilis_5851_Ut_c1_2_12_13_, 13 Cystopteris_fragilis_5851_Ut_c7_11_14_16_, 14 Cystopteris_fragilis_5951_col_c4_5_8_12_13_17_18_20_22_23_, 15 Cystopteris_fragilis_5951_col_c6_, 16 Cystopteris_fragilis_6380_Arg_c1_, 17 Cystopteris_fragilis_7009_Iceland_c10_15_, 18 Cystopteris_fragilis_7009_Iceland_c7_12_13_14_16_, 19 Cystopteris_fragilis_7248_Switz_c2_, 20 Cystopteris_fragilis_7248_Switz_c4_5_6_, 21 Cystopteris_fragilis_7625_Taiwan_c1_, 22 Cystopteris_fragilis_7625_Taiwan_c2_4_, 23 Cystopteris_montana_5839_NFD_c1_, 24 Cystopteris_moupinensis_4861_Tai_c4_, 25 Cystopteris_protusa_5838_Mis_c1_, 26 Cystopteris_protusa_5838_Mis_c2_5_, 27 Cystopteris_tenuis_6387_VT_c10_, 28 Cystopteris_tenuis_6387_VT_c1_4_8_14_, 29 Gymnocarpium_dryopteris_5837_Fin_c4_5_6_7_658bp, 30 Gymnocarpium_dryopteris_7981_Japan_c16_19_658, 31 Gymnocarpium_jessoense_parvulum_6979_Ont_c1_658, 32 Gymnocarpium_jessoense_parvulum_6979_Ont_c3_c4_658, 33 Gymnocarpium_remotepinnatum_4862_Tai_c3_658, 34 Gymnocarpium_appalachianum_7639_Virg_c2_4_6_10_, 35 Gymnocarpium_appalachianum_7800_Virg_c9_12_, 36 Gymnocarpium_disjunctum_4710_ALSK_c2_, 37 Gymnocarpium_disjunctum_7751_Wash_c2_5_9_13_, 38 Gymnocarpium_disjunctum_7751_Wash_c6_, 39 Gymnocarpium_dryopteris_5837_Fin_c1_2_, 40 Gymnocarpium_dryopteris_7981_Japan_c2_5_10_12_, 41 Gymnocarpium_dryopteris_7981_Japan_c3_6_, 42 Gymnocarpium_dryopteris_8031_Ont_c1_2_7_10_12_, 43 Gymnocarpium_dryopteris_8031_Ont_c6_, 44 Gymnocarpium_jessoense_parvulum_8120_Russia_c1_2_3_7_10_12_, 45 Gymnocarpium_jessoense_parvulum_8120_Russia_c6_8_9_, 46 Gymnocarpium_remotepinnatum_4862_Tai_c4_6_7_, 47 Gymnocarpium_robertianum_7945_Norw_c4_12_13_14_, 48 Gymnocarpium_robertianum_7945_Norw_c5_8_, 49 xCystocarpium_roskamianum_7974_c13_, 50 xCystocarpium_roskamianum_7974_c4_9_10_11_14_593, 51 xCystocarpium_roskamianum_7974_c5_18_19_, 52 xCystocarpium_roskamianum_7974_c6_12_; TREE bestREP1 = (2:0.02532628,((23:0.01830231,((24:0.01950644,(3:0.00156392,8:0.00306863):0.01052886):0.0036646,((((22:0.00874496,(16:0.00589209,(9:1.0E-8,6:0.0031122):0.00144286):0.0123165):0.00838476,(19:0.00162129,11:1.0E-8,49:0.00162143):0.02065786,((12:1.0E-8,(50:1.0E-8,14:0.00165946,17:1.0E-8,20:0.00166173,(28:1.0E-8,18:1.0E-8):0.00165739,10:1.0E-8):0.00166485,5:0.00332902):0.01687432,(4:1.0E-8,15:0.00171395):0.00749143):0.00316746):0.00161902,((21:0.00532685,13:0.01119795):0.00532768,7:0.02998411):0.00288332):0.00351263,(26:0.00755303,(27:0.0016601,25:0.00333747):0.00111833):0.00846479):0.00794439):0.00824848):0.03204931,(((37:0.00286396,40:1.0E-8,((43:1.0E-8,41:1.0E-8,29:1.0E-8):0.00143057,36:0.00142818,38:1.0E-8,52:0.0014279):0.00142821):0.0087682,(((44:1.0E-8,32:1.0E-8):0.00724655,33:0.00286838):0.0043833,47:0.00288569):0.00435052):0.0028606,46:0.01014762,(((31:1.0E-8,45:1.0E-8,30:1.0E-8):0.00287159,(39:0.00142921,51:1.0E-8,42:1.0E-8):0.0014317,35:0.00286715):0.00143215,48:0.02236448,34:0.002871):0.00143109):0.02682527):0.03076765,1:0.00317055); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = pos1and2) = 'Jukes-Cantor': 1 - 197; ProbModelSet * UNTITLED (CHARACTERS = pos3) = 'Jukes-Cantor': 1 - 99; ProbModelSet * UNTITLED (CHARACTERS = noncoding) = 'Jukes-Cantor': 1 - 449; ProbModelSet * UNTITLED (CHARACTERS = indels) = 'Mk1 (est.)': 1 - 28; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = pos1and2) = universal: 1 - 197; CODESET * UNTITLED (CHARACTERS = pos3) = universal: 1 - 99; CODESET * UNTITLED (CHARACTERS = noncoding) = universal: 1 - 449; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = pos1and2) = unord: 1 - 197; TYPESET * UNTITLED (CHARACTERS = pos3) = unord: 1 - 99; TYPESET * UNTITLED (CHARACTERS = noncoding) = unord: 1 - 449; TYPESET * UNTITLED (CHARACTERS = indels) = unord: 1 - 28; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1415216353272; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7275810511731632118; tell It; setDefaultOrder 0 1 2 7 10 14 25 3 4 5 6 8 9 11 12 13 15 16 17 18 19 20 21 22 23 24 26 27 38 39 44 45 48 32 33 34 35 36 37 40 41 42 43 46 47 49 50 51 28 29 30 31; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8096352793720275777; checksumv 0 2 873513813 null getNumChars 197 numChars 197 getNumTaxa 52 numTaxa 52 short true bits 15 states 15 sumSquaresStatesOnly 213578.0 sumSquares 213578.0 NumFiles 1 NumMatrices 4; setID 1 494988369335536525; checksumv 1 2 2609380550 null getNumChars 99 numChars 99 getNumTaxa 52 numTaxa 52 short true bits 15 states 15 sumSquaresStatesOnly 116090.0 sumSquares 116090.0 NumFiles 1 NumMatrices 4; setID 2 5621048596056622402; checksumv 2 2 3678047345 null getNumChars 449 numChars 449 getNumTaxa 52 numTaxa 52 short true bits 15 states 15 sumSquaresStatesOnly 463690.0 sumSquares 463690.0 NumFiles 1 NumMatrices 4; setID 3 1327239364905431775; checksumv 3 2 2645297222 null getNumChars 28 numChars 28 getNumTaxa 52 numTaxa 52 short true bits 3 states 3 sumSquaresStatesOnly 2813.0 sumSquares 2813.0 NumFiles 1 NumMatrices 4; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 835 600; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #7275810511731632118 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #7275810511731632118; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 735 533; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7275810511731632118 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1259.1415214778107.2783589266446738915; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 735 533; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((23:0.01830231,((24:0.01950644,(3:0.00156392,8:0.00306863):0.01052886):0.0036646,((((22:0.00874496,(16:0.00589209,(9:1.0E-8,6:0.0031122):0.00144286):0.0123165):0.00838476,(19:0.00162129,11:1.0E-8,49:0.00162143):0.02065786,((12:1.0E-8,(50:1.0E-8,14:0.00165946,17:1.0E-8,20:0.00166173,(28:1.0E-8,18:1.0E-8):0.00165739,10:1.0E-8):0.00166485,5:0.00332902):0.01687432,(4:1.0E-8,15:0.00171395):0.00749143):0.00316746):0.00161902,((21:0.00532685,13:0.01119795):0.00532768,7:0.02998411):0.00288332):0.00351263,(26:0.00755303,(27:0.0016601,25:0.00333747):0.00111833):0.00846479):0.00794439):0.00824848):0.03204931,(2:0.02532628,1:0.00317055):0.03076765):0.013412635,(((37:0.00286396,40:1.0E-8,((43:1.0E-8,41:1.0E-8,29:1.0E-8):0.00143057,36:0.00142818,38:1.0E-8,52:0.0014279):0.00142821):0.0087682,(((44:1.0E-8,32:1.0E-8):0.00724655,33:0.00286838):0.0043833,47:0.00288569):0.00435052):0.0028606,46:0.01014762,(((31:1.0E-8,45:1.0E-8,30:1.0E-8):0.00287159,(39:0.00142921,51:1.0E-8,42:1.0E-8):0.0014317,35:0.00286715):0.00143215,48:0.02236448,34:0.002871):0.00143109):0.013412635);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8096352793720275777 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 291; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 735 533; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.SortTaxa.SortTaxa.taxaSort; endTell; setActive; setTool mesquite.charMatrices.SortTaxa.SortTaxa.taxaSort; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;