#NEXUS [MacClade 4.05 registered to Susumu Takamatsu, Faculty of Bioresources, Mie University] BEGIN TAXA; DIMENSIONS NTAX=71; TAXLABELS Cystotheca_wrightii_ex_Quercus_AB000932 Podosphaera_xanthii_ex_Cucumis_AB040324 Podosphaera_hibiscicola_ex_Hibiscus_AB040308 Podosphaera_xanthii_ex_Rudbeckia_AB040296 Podosphaera_xanthii_ex_Cosmos_AB040300 Podosphaera_xanthii_ex_Helianthus_AB040311 Podosphaera_balsaminae_ex_Impatiens_AB462802 Podosphaera_balsaminae_ex_Impatiens_AB462805 Podosphaera_xanthii_ex_Physalis_AB040336 Podosphaera_xanthii_ex_Arctium_AB040310 Podosphaera_astericola_ex_Aster_AB040353 Podosphaera_cacalia_ex_Cacalia_AB040314 Podosphaera_erigerontis_canadensis_ex_Taraxacum_AB026148 Podosphaera_erigerontis_canadensis_ex_Taraxacum_AB040342 Podosphaera_erigerontis_canadensis_ex_MatricariaAB046988 Podosphaera_erigerontis_canadensis_ex_Taraxacum_AB046987 Podosphaera_intermedia_ex_Clerodendrum_AB026145 Podosphaera_elsholtziae_ex_Ajuga_AB026142 Podosphaera_erigerontis_canadensis_ex_Conyza_AB040313 Podosphaera_erigerontis_canadensis_ex_MelampyrumAB040332 Podosphaera_erigerontis_canadensis_ex_Leontodon_AB040331 Podosphaera_fuliginea_ex_Veronica_AB046986 Podosphaera_sibirica_ex_Veronicastrum_AB026144 Podosphaera_tridactyla_ex_PrunusAY833651 Podosphaera_tridactyla_ex_Prunus_AY833652 Podosphaera_tridactyla_ex_Prunus_AY833654 Podosphaera_tridactyla_ex_Prunus_AY833656 Podosphaera_tridactyla_ex_Prunus_AY833658 Podosphaera_tridactyla_ex_Prunus_AY833659 Podosphaera_tridactyla_ex_Prunus_AB000943 Podosphaera_longiseta_ex_Prunus_AB000945 Podosphaera_tridactyla_ex_Prunus_AF011318 Podosphaera_sp._ex_Prunus_AB026147 Fibroidium_sp._ex_Diostea_AB525944 Podosphaera_gunnerae_ex_Gunnera_AB525923 Podosphaera_gunnerae_ex_Gunnera_AB525924 Podosphaera_epilobii_ex_Epilobium_AB525926 Podosphaera_sp._ex_Stachyurus_AB525942 Podosphaera_sp._ex_Pyracantha_AB525936 Pourthiae_vollisa_AB026138 Podosphaera_sp._ex_Photinia_AB525934 Podosphaera_negeri_ex_Escallonia_AB925920 Podosphaera_negeri_ex_Escallonia_AB525919 Podosphaera_spiraeae_ex_Spiraea_AF154325 Podosphaera_spiraeae_ex_Spiraea_AB026149 Podosphaera_spiraeae_ex_Spiraea_AB026143 Podosphaera_salatani_ex_Cerasus_AB525929 Podosphaera_pannosa_ex_Rosa_AF011322 Podosphaera_pannosa_ex_Rosa_AB022348 Podosphaera_macularis_ex_Humulus_AB525917 Podosphaera_lini_ex_Linum_AB525925 Podosphaera_leucotricha_ex_Malus_AF073353 Podosphaera_leucotricha_ex_Malus_AB027231 Podosphaera_japonica_ex_Stephanandra_AB525943 Podosphaera_fugax_ex_Geranium_AB026134 Podosphaera_spiraeae_ex_Filipendula_AB022385 Podosphaera_ferruginea_ex_Sanguisorba_AB027232 Podosphaera_ferruginea_ex_Aruncus_AB026152 Podosphaera_curvispora_ex_Aria_AB525928 Podosphaera_clandestina_ex_Spiraea_AB026137 Podosphaera_clandestina_ex_Spiraea_AB525941 Podosphaera_clandestina_ex_Spiraea_AB026150 Podosphaera_clandestina_ex_Crataegus_AB525931 Podosphaera_clandestina_ex_Prunus_AF011317 Podosphaera_clandestina_ex_Prunus_AF011316 Podosphaera_cercidiphylli_ex_Cercidiphyllum_AB026140 Podosphaera_caricae_papayae_ex_Carica_AB525918 Podosphaera_aphanis_ex_Fragaria_AF073355 Podosphaera_aphanis_ex_Fragaria_AB026136 Podosphaera_aphanis_ex_Agrimonia_AB026141 Oidium_maculatae_ex_Viola_AB525947; END; BEGIN CHARACTERS; DIMENSIONS NCHAR=496; FORMAT DATATYPE=DNA MISSING=? GAP=- MATCHCHAR=. ;OPTIONS MSTAXA=UNCERTAIN ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Cystotheca_wrightii_ex_Quercus_AB000932 CTGAGCGTGAGGCCACGCTGGGCGCCTGGCGCCAGGCG-TGGCTGACCCTCCACCCGTGTCTATCTTCTCA--TGTTGCTTTGGCGGGCCGGGCCCTGTGCCCTCCCGGCGCCTGCTGGGACGCGCCCGCCAGAGCCACCCTAACGCGTGCTGTT--TGTGTGGTCAGAGTGGTAGCAGAATTAGAATAAAACTTTCAACAACGGATCTCTTGGCTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCCGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCAGTACAACCCCTCAAGCCTGGCTTGGTCTTGGAGCGCGCCCCGCGGGGCGGCTCTTAAATGCAGTGGCGGTGCCGTCGGGCTCTACGCGTAGTTATTTC--TCTCGCGACAGGGTGGTGACGGGACCTGCCAGAAGCCTCA--TCATACTAGG [487] Podosphaera_xanthii_ex_Cucumis_AB040324 .......C......C...A.C....AC.---.GCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T.....T.....AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-............A............G..T....G-..TC......C.C....C.............T.GT.T.....C........C..G.A--...........A....C.....C...C.......C..C-----AG.CT.T.. [475] Podosphaera_hibiscicola_ex_Hibiscus_AB040308 .......C......C...A.C....AC.---.GCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T.....T.....AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-............A............G..T....G-..TC......C.C....C.............T.GT.T.....C........C..G.A--...........A.C..C.....C...C.......C..C-----AG.CT.T.. [475] Podosphaera_xanthii_ex_Rudbeckia_AB040296 .......C......C...A.C....AC.---.GCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T.....T.....AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-............A............G..T....G-..TC......C.C....C.............T..T.T.....C........C..G.A--...........A.C..C.....C...C.......C..C-----AG.CT.T.. [475] Podosphaera_xanthii_ex_Cosmos_AB040300 .......C......C...A.C....AA.---.GCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T.....T.....AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C.C..................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C........C..G.A--...........A.C........C...C.......C..C-----AG.CT.T.. [475] Podosphaera_xanthii_ex_Helianthus_AB040311 .......C......C...A.C....AA.---.GCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T.....T.....AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C........C..G.A--...........A.C........C...C.......C..C-----AG.CT.T.. [475] Podosphaera_balsaminae_ex_Impatiens_AB462802 ----------------..A.C....AA.---.GCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T.....T.....AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-.........................G..T....G-..TC......C.C....C.............T.------------------------------------------------------------------------------ [388] Podosphaera_balsaminae_ex_Impatiens_AB462805 .......C......C...A.C..TTGC.---.GCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T.....T.....AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C........C..G.A--...........A.C..C.....C...C.......C..C-----AG.CT.T.. [475] Podosphaera_xanthii_ex_Physalis_AB040336 .......C......C...A.C....AC.---.GCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T.....T.....AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C........C..G.A--...........A.C..C.....C...C.......C..C.C---AG.CT.T.. [477] Podosphaera_xanthii_ex_Arctium_AB040310 .......C......C...A.C....AC.---.GCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T.....T.....AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C........C..G.A--...........A.C..C.....C...C.......C..C.C---AG.CT.T.. [477] Podosphaera_astericola_ex_Aster_AB040353 .......C......C...A.T....AA.---.TCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T.....T.....AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C........C.GC.A--.............C..C.....C...C.......C..C-----A..TT.T.. [475] Podosphaera_cacalia_ex_Cacalia_AB040314 .......C......C...A.C....AA.---.ACT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T.....T.....AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C........C..G.A--...........A.C........C...C.......C..C-----.G.CT.T.. [475] Podosphaera_erigerontis_canadensis_ex_Taraxacum_AB026148 .......C......C...A.C....AA.---.TCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T...........AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C..T.....C..G.A--.............C..C.....C...C.......C.TC-----A..TT.T.. [475] Podosphaera_erigerontis_canadensis_ex_Taraxacum_AB040342 .......C......C...A.C....AA.---.TCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T...........AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C..T.....C..G.A--.............C..C.....C...C.......C.TC-----A..TT.T.. [475] Podosphaera_erigerontis_canadensis_ex_MatricariaAB046988 .......C......C...A.C....AA.---.TCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T...........AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C..T.....C..G.A--.............C..C.....C...C.......C..C-----A..TT.T.. [475] Podosphaera_erigerontis_canadensis_ex_Taraxacum_AB046987 .......C......C...A.C....AA.---.TCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T...........AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C..T.....C..G.A--.............C..C.....C...C.......C..C-----A..TT.T.. [475] Podosphaera_intermedia_ex_Clerodendrum_AB026145 .......C......C...A.C....AA.---.TCT...GC..T.................GA.CTC.GATC--.....................T.---.A...G.....T..G.....CGA.T...........AAG...C...T........GTGA....T...T...GAAAT.TG....G..--..............................T...............................................................................................C....................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C........C..G.ATA.............C..C.....C...C.......C..C-----A..TT.T.. [479] Podosphaera_elsholtziae_ex_Ajuga_AB026142 .......C......C...A.C....AA.---.TCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T...........AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-....G....................G..T....G-..TC......C.C....C.............A..T.T.....C........C..G.A--.............C..C.....C...C.......C..C-----A..TT.T.. [475] Podosphaera_erigerontis_canadensis_ex_Conyza_AB040313 .......C......C...A.C....AA.---.TCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T...........AAG...C...T........G--A....T...T...GAAAT.T........--..............................T....................................................................................................................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C........C..G.A--.............C..C.....C...C.......C..C-----T..TT.T.. [475] Podosphaera_erigerontis_canadensis_ex_MelampyrumAB040332 .......C......C...A.C....AA.---.TCT...GC..T.................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T...........AAG...C...T........G--A....T...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C........C..G.A--.......C.....C..C.....C...C.......C..C-----A..TT.T.. [475] Podosphaera_erigerontis_canadensis_ex_Leontodon_AB040331 ------.C......C...A.C....AA.---.TCT...GC....................GA.CTC.TATC--.....................T.---.A...G.....T..G.....CGA.T...........AAG...C...T........G--A....C...T...GAAAT.TG.......--..............................T...............................................................................................C....................T..........A...-.........................G..T....G-..TC......C.C....C.............T..T.T.....C........C..G.A--.............C..C.....C...C.......C..C-----A..TT.T.. [469] Podosphaera_fuliginea_ex_Veronica_AB046986 .A...T.C......C...G.A....A..---..CT...G.....................GA.CTC.TATC--.....................T.---.A...G.....CT.G.....CG..T...........AAG...C...T........C--A....C...T.....AAT.TG.......--..............................T...............................................................................................C....................T..........A...-..T.........A............G..T....G-..TC......C.C....CA............T..T.T.....C........C..G.A--.............CT.CAG...C...C.......C..C-----AT.TTCT.. [475] Podosphaera_sibirica_ex_Veronicastrum_AB026144 .......C......C..TC.A.......---.TC....GC.....................A.CT..T.TC--.....................T.---.A...G.T...T..G.....CG..T...........AAG...C...T......A.G--C....T...T.....AAT..G.......--..............................T....................................................................................................................T..........A...-T...........C............G..T.....-..T.......C.C....C.............T..T.T.....C........C..G.A--.............C..C....AC...C.......C..C-----TC.TTCT.. [475] Podosphaera_tridactyla_ex_PrunusAY833651 .c.....c..........a.........---t.ct.t.t.....................ga..ta.a..tat.....................t.---.a...g.....t..g......ga.t...........aag...c...t........c--a....t...t.....aat.tg......a--..............................t...............................................................................................c....................t..........a...-............a............g..t....g-..t-......c.c....c................t.t.....c..t.....c.gg.a--...........a.c..c.................c..c.c--gat.ttctt. [479] Podosphaera_tridactyla_ex_Prunus_AY833652 .......c..........a.........---t.ct.t.t.....................ga..ta.a...at.....................t.---.a...g.....t..g......ga.t...........aag...c...t........c--a....t...t.....aat.tg......a--..............................t...............................................................................................c....................t..........a...-............a............g..t....g-..t-......c.c....c................t.t.....c..t.....c..g.a--...........a.c..c.................c..c.c--aat.ttctt. [479] Podosphaera_tridactyla_ex_Prunus_AY833654 .......c..........a.........---t.ct.t.t.....................ga..ta.a...at.....................t.---.a...g.....t..g......ga.t...........aag...c...t........c--a....t...t.....aat.tg......a--..............................t...............................................................................................c....................t..........a...-............a............g..t....g-c.t-......c.c....c................t.t.....c..t.....c..g.a--...........a.c..c.................c..c.c--aat.ttctt. [479] Podosphaera_tridactyla_ex_Prunus_AY833656 ..................g......a..---..tt...tc....................ga.ctg..atc--.....................t.---.t...g.....t..g.....cg..t...........aag...c...t........g--a....c...t...c.aat.tg....a..--..............................t...............................................................................................c....................t..........a...-............c............g..c....g-a.ct......c.c....c...........c....t.t.....c........c.cg.a--.............c..c.....a...........c..c..ag-tt.ttct.. [479] Podosphaera_tridactyla_ex_Prunus_AY833658 ..................g......a..---..tt...tc....................ga.ctg..atc--.....................t.---.t...g.....t..g.....cg..t...........aag...c...t........g--a....c...t...c.aat.tg....a..--..............................t...............................................................................................c....................t..........a...-............c............g..c....g-a.ct......c.c....c.t.........c....t.t.....c........c.cg.a--.............c..c.....a...........c..c..ag.tt.ttct.. [480] Podosphaera_tridactyla_ex_Prunus_AY833659 .......c..........g......a..---.tct...tc....................ga.c.g...tc--.....................t.---.t...g.....t..g......ga.t...........aag...c...t........c--a....a...t.....aat.tg.......--..............................t...............................................................................................c....................t..........a...--...........a............g..t....g-a.cc........c....c................t.t.....c........c.cg.a--.............c..c....ac...c.......c..c.c---at.ttct.. [476] Podosphaera_tridactyla_ex_Prunus_AB000943 .C.....C..........A.........---T.CT.T.T.....................GA..TA.A..TAT.....................T.---.A...G.....T..G......GA.T...........AAG...C...T........C--A....T...T.....AAT.TG......A--..............................T...............................................................................................C....................T..........A...-............A............G..T....G-..T-......C.C....C................T.T.....C..T.....C..G.A--...........A.C..C.................C..C.C--AAT.TTCTT. [479] Podosphaera_longiseta_ex_Prunus_AB000945 .C.....C..........G.........---T.CT...T.....................GA.CTA.A..TAT.....................T.---.A...G.....T..G......GA.T...........AAG...C...T........C--A........T.....AAT.TG......A--..............................T...............................................................................................C....................T..........A...-............T............G..T....G-..T-......C.C....C................T.T.....C..T.....C..G.A--...........A.C..C......................---AAT.TTCTA. [478] Podosphaera_tridactyla_ex_Prunus_AF011318 --------------------------------------TC....................GA.CTG..ATC--.....................T.---.T...G.....T..G.....CG..T...........AAG...C...T........G--A....C...T...C.AAT.TG....A..--..............................T...............................................................................................C....................T..........A...-............C............G..C....G-A.CT......C.C....C.T.........C....T.T.....C......A.C.CG.A--.............C..C.....A...........C..CG-AG.TT.TTCT.. [444] Podosphaera_sp._ex_Prunus_AB026147 .......C..........G......A..---.TCT...TC....................GA.C.G...TC--.....................T.---.T...G.....T..G......GA.T...........AAG...C...T........C--A....A...T.....AAT.TG.......--..............................T...............................................................................................C....................T..........A...--...........A............G..T....G-A.CC........C....C................T.T.....C........C.CG.A--.............C..C....AC...C.......C..C.C---AT.TTCT.. [476] Fibroidium_sp._ex_Diostea_AB525944 ..........A.......A......GA.---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A...--....CA...T...-AAACATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAG.........A....T.T.....C........C.CG.A--...........A....C......C.......A..C..A.C-TATT.TT.T.. [477] Podosphaera_gunnerae_ex_Gunnera_AB525923 GC.....C......C...G.A....A..---..CT...G.....................GA.CTC.TATC--.....................T.---.A...G.....C..G..C..CG..T...........AAG...C...T........C--A........T...A.AAT.TG.......--..............................T...............................................................................................C....................T..........A...-..T......................G..T....G-..TC......C.C....CA............T..T.T.....C........C..G.A--.............C..CA....C...C.......C..C-----AT.TTCT.. [475] Podosphaera_gunnerae_ex_Gunnera_AB525924 GC.....C......C...G.A....A..---..CT...G.....................GA.CTC.TATC--.....................T.---.A...G.....C..G..C..CG..T...........AAG...C...T........C--A........T.....AAT.TG.......--..............................T...............................................................................................C....................T..........A...-..T......................G..T....G-..TC......C.C....CA............T..T.T.....C........C..G.A--.............C..CA....C...C.......C..C-----AT.TTCT.. [475] Podosphaera_epilobii_ex_Epilobium_AB525926 ..........C.......A......T..---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A..C--A...CA...T...-AAA.ATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAG.........A....T.T.....C........C.CG.A--...........A....C.C............A..C..A.C--.AT.TT.T.. [476] Podosphaera_sp._ex_Stachyurus_AB525942 ..........A.......A..AT..TC.---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.A...A...--A...CA...T...-AAA.ATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAG.........A....T.T.....C........C.CG.A--...........A....C..T...........A..C..A.C--.AT.TT.T.. [476] Podosphaera_sp._ex_Pyracantha_AB525936 ..................A......TC.---T.CT...-C....................GA.CTGAT.T----....................T.---...........T..G......GA.T........A..AAG...C...T....TA...--A...CA...T...-AAACCTTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CA..........A....T.T.....C........C.CG.A--..............A.C..T..............CA...---.TT.TTAT.. [474] Pourthiae_vollisa_AB026138 ...............T..A......T..---TTCT...-.....................G..CTCGT.T---.....................A.---.A...A.....T..G......GA.T...........A.....C...T.....A...--....CA...T...-TCG.ATT......TG...............................T....................................................................................................................T..........A...T..T.......ACA............G.......A-TGCT....T.C.C....CAG.........CT.C.T.......C........C.CGCA--.......C...A..C.C..T..............TA.CACC--TTCTT.T.. [478] Podosphaera_sp._ex_Photinia_AB525934 ..................A..A.A.TC.---TTCT...-C....................GA.CTA.T.G---.....................T.---.A...A.....T..G......GA.............AAG...C...T....TA...--A...CA...T...-TC..AATT...A..--..............................T....................................................................................................................T..........A...T..T.........A............G.T.....A-.T.T....T.C.C....CAT.........A....T.T.....C........C.CA.A--...........A.CCACC....C...........T..C----.TT.T.AT.. [474] Podosphaera_negeri_ex_Escallonia_AB925920 ..........A.......A......GA.---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A...--....CA...T...-AAACATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAG.........A....T.T.....C........C.CG.A--...........A....C..T...C.......A..C..A.C-TATT.TT.T.. [477] Podosphaera_negeri_ex_Escallonia_AB525919 ..........A.......A......GA.---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A...--....CA...T...-AAACATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAG.........A....T.T.....C........C.CG.A--...........A....C......C.......A..C..A.C-TATT.TT.T.. [477] Podosphaera_spiraeae_ex_Spiraea_AF154325 ..........A.......A......T..---T.CT...-C....................GA.CTGAT.T---.....................T.---.A..CA.....T..G......GA.T...........AAG...C...T.....A...--A...CA...T...-AAA.ATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAT.........A....T.T.....C........C.CG.A--...........A....C..T..............CA.A..--.AT.T..T.. [476] Podosphaera_spiraeae_ex_Spiraea_AB026149 ..........A......TA......T..---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........A.G...C...T.....A...--A...CA...T...-AAACATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..CC....T.C.C....CAT.........A....T.T.....C........C.CG.A--...........A....C..T...........A..C..A..--.AT.TT.T.. [476] Podosphaera_spiraeae_ex_Spiraea_AB026143 ..........A..T...TA......T..---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...AT....T..G......GA.T...........AAG...C...T.....A...--A...CA...T...-AAACATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAT.........A....T.T.....C........C.CG.A--...........A....C..T...........A..C..A..--.AT.TT.T.. [476] Podosphaera_salatani_ex_Cerasus_AB525929 ..................G......A..---..TT...TC....................GA.CTG..ATC--.....................T.---.T...G.....T..G.....CG..T...........AAG...C...T........G--A....C...T.....AAT.TG....A..--C.............................T...............................................................................................C....................T..........A...-............C............G..C....G-A.CT......C.C....C...........C....T.T.....C........C.CG.A--.......--------------------------------------------- [435] Podosphaera_pannosa_ex_Rosa_AF011322 .......C..A.......A..A...T..---T.GT...-C........T...........GA.CTGAA.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A...--A...CA...T...-AAA.A.TT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAG.........A....T.T.....C........C.CG.A--...........A....C..............A..C..A.C-TATT.TT.T.. [477] Podosphaera_pannosa_ex_Rosa_AB022348 .......C..A.......A..A...T..---T.CT...-C....................GA.CTGAA.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A...--A...CA...T...-AAA.A.TT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAG.........A....T.T.....C........C.CG.A--...........A....C..............A..C..A.C-TATT.TT.T.. [477] Podosphaera_macularis_ex_Humulus_AB525917 ..........A.......A.........---T.CT...-C....................GA.CTGAT.A---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.A..TA...--A...CA...T...-AAA.ATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-.TTC....T.C.C....CAT.........A....T.T.....C........C.CG.A--...........A....C..T...........A..C..A..--.AT.TT.T.. [476] Podosphaera_lini_ex_Linum_AB525925 ..........A.......A......A..---T.CT...-C....................GA.CTGAT.A---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T....T.A..--A...CA...T...-AAA.ATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-.GTC....T.C.C....CAT.........A....T.T.....C........C.CG.A--...........A.C..C..T...........A..C..A..--.AT.TT.T.. [476] Podosphaera_leucotricha_ex_Malus_AF073353 ..................A..A.A.TC.---TTCT...-C....................GA.CTA.T.G---.....................T.---.A...A.....T..G......GA.............AAG...C...T....TA...--A...CA...T...-TC..AATT...A..--..............................T....................................................................................................................T..........A...T..T.........A............G.T.....A-.T.T....T.C.C....CAT.........A....T.T.....C........C.CA.A--...........A.CCACC....C...........T..C----.TT.T.AT.. [474] Podosphaera_leucotricha_ex_Malus_AB027231 ..................A..A.A.TC.---TTCT...-C....................GA.CTA.T.G---....................TT.---.A...A.....T..G......GA.............AAG...C...T....TA...--A...CA...T...-TC..AATT...A..--..............................T....................................................................................................................T..........A...T..T.........A............G.T.....A-.T.T....T.C.C....CAT.........A....T.T.....C........C.CA.A--...........A.CCACC....C...........T..C----.TT.T.AT.. [474] Podosphaera_japonica_ex_Stephanandra_AB525943 ..........A......TA..A...T..---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A...--A...CA...T...-AAA.ATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAG.........A....T.T.....C........C.CG.A--...........A....C..T...........A..C..A.C-TATT.TT.T.. [477] Podosphaera_fugax_ex_Geranium_AB026134 ..........A.......A..A...TG.---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A..G--....CA...T...-AAA.ATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAG.........A....T.T.....C........C.CG.A--...........A....C..T...........A.CC..A.C--.AT.TT.T.. [476] Podosphaera_spiraeae_ex_Filipendula_AB022385 ..........A.......A.........---T.CT...-C....................GA.CTGAT.A---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.A..TA...--A...CA...T...-AAA.ATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-.TTC....T.C.C....CAT.........A....T.T.....C........C.CG.A--...........A....C..T...........A..C..A..--.AT.TT.T.. [476] Podosphaera_ferruginea_ex_Sanguisorba_AB027232 ..........A.......A.........---T.CT...-C....................GA.CTGAT.A---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.A..TA...--A...CA...T...-AAA.A.TT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-.TTC....T.C.C....CA..........A....T.T.....C........C.CG.A--...........A....C..T...........A..C..A..--.AT.TT.T.. [476] Podosphaera_ferruginea_ex_Aruncus_AB026152 ..........A......TA......T..---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A...--A...CA...T...-AAACATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAT.........A....T.T.....C........C.CG.A--...........A....CA.T...........A..C..A..--.AT.TT.T.. [476] Podosphaera_curvispora_ex_Aria_AB525928 .............T....A..A.A.T..---TTCT...-....C................GA.CTA.T.G---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T....TA..C--A....A...T...-TC..AATT...A..--..............................T................................................R................A..................................................T..........A...T..T.........A............G.......A-.TTT....T.C.C.....A..........A....T.T.....C........C..G.A--...........A.CCAC.....CG.T........C..CA----TTCT..T.. [474] Podosphaera_clandestina_ex_Spiraea_AB026137 ..........A.......A......T..---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A...--A...CA...T...-AAA.ATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAT.........A....T.T.....C........C.CG.A--...........A....C..A..............CA.A.--A.AT.T..T.. [476] Podosphaera_clandestina_ex_Spiraea_AB525941 ..........A.......A......TC.---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A...--A...CA...T...-AAA.CTTT..CA..--..............................T.................................................................................................C..................T..........A...T..T......................G......TG-..TC....T.C.C....CAT.........A....T.T.....C........C.CG.A--...........A....C..T..............CA.A.--A.AT.T..T.. [476] Podosphaera_clandestina_ex_Spiraea_AB026150 .......C..A.......A......T..---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A...--A...C....T...-AAACATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TT....T.C.C....CAT.........A....T.T.....C........C.CG.A--...........A....C..T..............CA.A.--A.AT.CT.T.. [476] Podosphaera_clandestina_ex_Crataegus_AB525931 .......C..........A..A.A.T..---T.CT...-C..T.................GA.CTGAT.T---.....................T.---.A..CA.....T..G......GA.T...........AAG...C...T.....A...--A...CA...T...AAAA.ATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.T.....A-..TC....T.C.C.-..C.T.........A....T.T.....C........C.CG.A--...........A..T.CACT.A............C..C.C-T.TT.TTAT.. [477] Podosphaera_clandestina_ex_Prunus_AF011317 .......C..A.......A.....TT..---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A...--A...CA...T...-AAA.ATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAT.........A....T.T.....C........C.CG.A--...........A....C..T..............CA.A.---ATT.TT.T.. [475] Podosphaera_clandestina_ex_Prunus_AF011316 -------------.....A......T..---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A..T..T..G......GA.T....T......AAG...C...T.....A...--A...CA...T...-AAA.ATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.T.....G-..TC....T.C.C....CAT.C.......A....T.T.....C...C....CGCG.A--...........A....C..T..............CA.A.--A.ATATT.T.. [463] Podosphaera_cercidiphylli_ex_Cercidiphyllum_AB026140 ..................G......T..---T.CT...-C....................GA.CTG.T.T---C....................T.---.A...A.....T..G......GA.............AAG...C...T.....A...--A...CA...T...-AAA.AATT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CA..........A....T.T.....C........C.CG.A--...........A....C..T..............C..----T.TT.T..T.. [474] Podosphaera_caricae_papayae_ex_Carica_AB525918 ..........A.......A......T..---T.CT...-C..T.................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A...--A...CA...T...-AAA.ATTT...A..--..............................T...................................................................................................................CT..........A...T..T......................G.......G-..TC....T.C.C....CAG.........A....T.T.....C........C.CG.A--...........A....C..T...........A..C..A.C-TATT.TT.T.. [477] Podosphaera_aphanis_ex_Fragaria_AF073355 .......C..A.......A..A...T..---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A...--A...CA...T...-AAA.ATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAG.........A....T.T.....C........C.CG.A--...........A....C..T...........A..C..A.C-TATT.TT.T.. [477] Podosphaera_aphanis_ex_Fragaria_AB026136 .......C..A.......A..A...T..---T.CC...-C....................GA.CTGAT.T---.....................T.---.A...A.....TT.G......GA.T...........AAG...C...T.....A...--A...CA...T...-AAA.ATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC....T.C.C....CAG.........A....T.T.....C........C.CG.A--...........A....C..T...........A..C..A.C--.AT.TT.T.. [476] Podosphaera_aphanis_ex_Agrimonia_AB026141 ..........A.......A.........---T.CT...-C....................GA.CTGAT.A---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.A..TA...--A...CA...T...-AAACATTT...A..--..............................T....................................................................................................................T..........A...T..T......................G.......G-.TTC....T.C.C....CAT.........A....T.T.....C........C.CG.A--...........A....C..T...........A..C..A..--.AT.CT.T.. [476] Oidium_maculatae_ex_Viola_AB525947 ..........A.......A......G..---T.CT...-C....................GA.CTGAT.T---.....................T.---.A...A.....T..G......GA.T...........AAG...C...T.....A...--....CA...T...-AAA.ATTT...C..--..............................T....................................................................................................................T..........A...T..T......................G.......G-..TC......C.C....CAG.........A....T.T.....C........C.CG.A--...........A....C..T...........A..C..A.CTA.ATATA.T.. [478] ; END; BEGIN TREES; [! >Data file = Podosphaera71taxa.nex >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > Of 496 total characters: > All characters are of type 'unord' > All characters have equal weight > 331 characters are constant > 50 variable characters are parsimony-uninformative > Number of parsimony-informative characters = 115 > Gaps are treated as "missing" > Multistate taxa interpreted as uncertainty > Starting tree(s) obtained via stepwise addition > Addition sequence: random > Number of replicates = 100 > Starting seed = 1505311400 > Saving optimal trees from each replicate, even if they are not optimal > overall > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > Initial 'MaxTrees' setting = 100 (will be auto-increased by 100) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 615157407 > Score of best tree(s) found = 427 > Number of trees retained = 4348 > Time used = 00:04:34.7 ] TREE * PAUP_145 = [&R] (Cystotheca_wrightii_ex_Quercus_AB000932,(((((((((((Podosphaera_xanthii_ex_Cucumis_AB040324,Podosphaera_hibiscicola_ex_Hibiscus_AB040308),Podosphaera_xanthii_ex_Rudbeckia_AB040296),Podosphaera_balsaminae_ex_Impatiens_AB462805,Podosphaera_xanthii_ex_Physalis_AB040336,Podosphaera_xanthii_ex_Arctium_AB040310),((Podosphaera_xanthii_ex_Cosmos_AB040300,Podosphaera_xanthii_ex_Helianthus_AB040311,Podosphaera_cacalia_ex_Cacalia_AB040314),Podosphaera_balsaminae_ex_Impatiens_AB462802)),Podosphaera_astericola_ex_Aster_AB040353),((Podosphaera_erigerontis_canadensis_ex_Taraxacum_AB026148,Podosphaera_erigerontis_canadensis_ex_Taraxacum_AB040342),Podosphaera_erigerontis_canadensis_ex_MatricariaAB046988,Podosphaera_erigerontis_canadensis_ex_Taraxacum_AB046987),Podosphaera_intermedia_ex_Clerodendrum_AB026145,Podosphaera_elsholtziae_ex_Ajuga_AB026142,Podosphaera_erigerontis_canadensis_ex_Conyza_AB040313,Podosphaera_erigerontis_canadensis_ex_MelampyrumAB040332),Podosphaera_erigerontis_canadensis_ex_Leontodon_AB040331),Podosphaera_sibirica_ex_Veronicastrum_AB026144),(Podosphaera_fuliginea_ex_Veronica_AB046986,(Podosphaera_gunnerae_ex_Gunnera_AB525923,Podosphaera_gunnerae_ex_Gunnera_AB525924))),(((Podosphaera_tridactyla_ex_Prunus_AY833656,(Podosphaera_tridactyla_ex_Prunus_AY833658,Podosphaera_tridactyla_ex_Prunus_AF011318)),Podosphaera_salatani_ex_Cerasus_AB525929),(Podosphaera_tridactyla_ex_Prunus_AY833659,Podosphaera_sp._ex_Prunus_AB026147))),((Podosphaera_tridactyla_ex_PrunusAY833651,(Podosphaera_tridactyla_ex_Prunus_AY833652,Podosphaera_tridactyla_ex_Prunus_AY833654),Podosphaera_tridactyla_ex_Prunus_AB000943),Podosphaera_longiseta_ex_Prunus_AB000945)),(((((((Fibroidium_sp._ex_Diostea_AB525944,Podosphaera_negeri_ex_Escallonia_AB525919),Podosphaera_negeri_ex_Escallonia_AB925920),(((Podosphaera_pannosa_ex_Rosa_AF011322,Podosphaera_pannosa_ex_Rosa_AB022348),Podosphaera_aphanis_ex_Fragaria_AF073355),Podosphaera_japonica_ex_Stephanandra_AB525943),Podosphaera_caricae_papayae_ex_Carica_AB525918),(Podosphaera_epilobii_ex_Epilobium_AB525926,(((Podosphaera_sp._ex_Stachyurus_AB525942,Podosphaera_fugax_ex_Geranium_AB026134),Podosphaera_aphanis_ex_Fragaria_AB026136),((((Podosphaera_spiraeae_ex_Spiraea_AF154325,Podosphaera_clandestina_ex_Spiraea_AB026137,Podosphaera_clandestina_ex_Spiraea_AB525941),(Podosphaera_clandestina_ex_Spiraea_AB026150,Podosphaera_clandestina_ex_Prunus_AF011317),Podosphaera_clandestina_ex_Prunus_AF011316),(Podosphaera_spiraeae_ex_Spiraea_AB026149,Podosphaera_spiraeae_ex_Spiraea_AB026143,Podosphaera_ferruginea_ex_Aruncus_AB026152),((Podosphaera_macularis_ex_Humulus_AB525917,Podosphaera_spiraeae_ex_Filipendula_AB022385,Podosphaera_ferruginea_ex_Sanguisorba_AB027232,Podosphaera_aphanis_ex_Agrimonia_AB026141),Podosphaera_lini_ex_Linum_AB525925)),Oidium_maculatae_ex_Viola_AB525947)))),(Podosphaera_sp._ex_Pyracantha_AB525936,Podosphaera_clandestina_ex_Crataegus_AB525931)),(Pourthiae_vollisa_AB026138,((Podosphaera_sp._ex_Photinia_AB525934,Podosphaera_leucotricha_ex_Malus_AF073353,Podosphaera_leucotricha_ex_Malus_AB027231),Podosphaera_curvispora_ex_Aria_AB525928))),Podosphaera_cercidiphylli_ex_Cercidiphyllum_AB026140)); END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1-496; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; END; BEGIN MacClade; Version 4.0 84; LastModified -1206889766; FileSettings treewindow '0' '0' '1' '1'; Singles 000; Editor 0001100111111110010001001 '1' '24' Geneva '9' '342' '1' all; EditorPosition '42' '6' '691' '965'; TreeWindowPosition '42' '6' '701' '974'; ListWindow Characters closed Geneva '9' '50' '10' '265' '445' 000; ListWindow Taxa closed Geneva '9' '50' '10' '265' '561' 100000; ListWindow Trees closed Geneva '9' '50' '25' '121' '379' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ; 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