#NEXUS [written Fri Jan 03 14:38:18 EST 2014 by Mesquite version 2.74 (build 550) at ag-plp-11ba0tj.ag.cornell.edu/132.236.163.8] BEGIN TAXA; TITLE 'Taxa_ITS region_Fig4'; DIMENSIONS NTAX=36; TAXLABELS Chrysomyxa_weirii_GU049472 Melampsora_epitea_Mel_A Melampsora_epitea_Mel_H Melampsora_epitea_Mel_J Melampsora_epitea_Mel_R Melampsora_epitea_Mel_S 'Melampsora abietis-populi AB116870' Melampsora_amygdalinae_AY444776 Melampsora_caprearum_AY444779 Melampsora_coleosporioides_AY652948 Melampsora_epiphylla_AY652947 Melampsora_epitea_AY471631 Melampsora_epitea_AY471639 Melampsora_epitea_AY471643 Melampsora_epitea_GQ479249 Melampsora_iranica_FJ386432 'Melampsora larici-epitea JF825970' 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' 'Melampsora larici-epitea f.sp. larici-epitea AY444778' 'Melampsora laricis-pentandrae AY444771' Melampsora_laricis_AB116863 Melampsora_medusae_AY375274 Melampsora_medusae_f._sp._tremuloidis_EU808031 Melampsora_medusae_f.sp._tremuloidis_EU808044 'Melampsora medusae-populina AY375282' Melampsora_pinitorqua_EU808035 Melampsora_populnea_EU808037 'Melampsora ribesii-purpureae AY444770' 'Melampsora salicis-albae FJ455127' Melampsora_spp._AB116868 Melampsora_spp._JF825971 Melampsora_spp._JN646134 Melampsora_spp._JN646135 Melampsora_spp._JN646171 Melampsora_spp._JN646232 Melampsora_spp._JN646237 ; END; BEGIN CHARACTERS; TITLE 'ITS_Final_Alignment_Fig4'; DIMENSIONS NCHAR=884; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Chrysomyxa_weirii_GU049472 -------------------------------------------------G Melampsora_epitea_Mel_A AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_epitea_Mel_H AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_epitea_Mel_J AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_epitea_Mel_R AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_epitea_Mel_S AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA 'Melampsora abietis-populi AB116870' AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_amygdalinae_AY444776 ----------------------------------AAGGATCATTAATACA Melampsora_caprearum_AY444779 ----------------------------------AAGGATCATTAATACA Melampsora_coleosporioides_AY652948 -----------------------------------AGGATCATTAATACA Melampsora_epiphylla_AY652947 -----------------------------------AGGATCATTAATACA Melampsora_epitea_AY471631 AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_epitea_AY471639 AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_epitea_AY471643 AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_epitea_GQ479249 ----------------------------------------CATTAATACA Melampsora_iranica_FJ386432 ----------------------GTGAACCTGCGGAAGGATCATTAATACA 'Melampsora larici-epitea JF825970' AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' ----------------------------------AAGGATCATTAATACA 'Melampsora larici-epitea f.sp. larici-epitea AY444778' ----------------------------------AAGGATCATTAATACA 'Melampsora laricis-pentandrae AY444771' ----------------------------------AAGGATCATTAATACA Melampsora_laricis_AB116863 AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_medusae_AY375274 ---------------TCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_medusae_f._sp._tremuloidis_EU808031 ----------------------------------------CATTAATACA Melampsora_medusae_f.sp._tremuloidis_EU808044 ----------------------------------------CATTAATACA 'Melampsora medusae-populina AY375282' ---------------TCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_pinitorqua_EU808035 ----------------------------------------CATTAATACA Melampsora_populnea_EU808037 ----------------------------------------CATTAATACA 'Melampsora ribesii-purpureae AY444770' ----------------------------------AAGGATCATTAATACA 'Melampsora salicis-albae FJ455127' AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_spp._AB116868 AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_spp._JF825971 AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_spp._JN646134 ---------------TCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_spp._JN646135 ---------------TCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_spp._JN646171 ---------------TCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_spp._JN646232 ---------------TCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Melampsora_spp._JN646237 ---------------TCCGTAGGTGAACCTGCGGAAGGATCATTAATACA Chrysomyxa_weirii_GU049472 TTATCGAGTGCACTTCAATGTGACTCTTTATCTTTACCATCACCC-CCTC Melampsora_epitea_Mel_A -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATCACTATTAC---CACC Melampsora_epitea_Mel_H -TGTTGAGTGTGCTTTATTGCGACTCT-TTGTATA-TCATTAC---CCCC Melampsora_epitea_Mel_J -TGTTGAGTGTGCTTTATTGCGACTCT-TTGTATA-CTATTAC---CCCC Melampsora_epitea_Mel_R -T-CTGAGCGCACTTTAATGTGACTCT-TTGTATC-CCATTTA---CCCC Melampsora_epitea_Mel_S -T-CTGAGCGCACTTTAATGTGACTCT-TTGTATC-CCATTTA---CCCC 'Melampsora abietis-populi AB116870' -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATA-CCATTTA---CCCC Melampsora_amygdalinae_AY444776 -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATAACTATTAC---CACC Melampsora_caprearum_AY444779 -TGTTGAGCGCACTTTAATGTGACTCT-TGGAATAACTATTAC---CCCC Melampsora_coleosporioides_AY652948 -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATAACTATTAC---CACC Melampsora_epiphylla_AY652947 -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATAACTATTAC---CCCC Melampsora_epitea_AY471631 -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATCACTATTAC---CACC Melampsora_epitea_AY471639 -T-CTGAGCGCACTTTAATGTGACTCT-TTGTATC-CCATTTA---CCCC Melampsora_epitea_AY471643 -TGTTGAGTGTGCTTTATTGCGACTCT-TTGTATA-TCATTAC---CCCC Melampsora_epitea_GQ479249 -TGTTGAGCGCACTTTAATGYGACTCT-TTGTATCACTATTAC---CACC Melampsora_iranica_FJ386432 -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATACCCATTAC---CACC 'Melampsora larici-epitea JF825970' -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATAACTATTAC---CCCC 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' -TGTTGAGCGCACTTTAATGTGACTCT-TGGTATAACTATTAC---CCCC 'Melampsora larici-epitea f.sp. larici-epitea AY444778' -TGTTGAGCGCACTTTAATGTGACTCT-TGGTATAACTATTAC---CCCC 'Melampsora laricis-pentandrae AY444771' -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATACTTATTAC---CCCC Melampsora_laricis_AB116863 -TGTTGAGTT-GCTTTATTGCGATTCT-TTGTATA-CCATTAC---CCCC Melampsora_medusae_AY375274 -TGTTGAGTT-GCTTAAATGCGATTCT-TTGTATA-CTATTTACCCCCAC Melampsora_medusae_f._sp._tremuloidis_EU808031 -TGTTGAG?TTGCTTAAATGCGATTCT-TTGTAT?ACTATTTACCCCCAC Melampsora_medusae_f.sp._tremuloidis_EU808044 -TGTTGAG?TTGCTTAAATGCGATTCT-TTGTAT?ACTATTTACCCCCAC 'Melampsora medusae-populina AY375282' -TGTTGAGTT-GCTTAAATGCGATTCT-TTGTATA-CTATTTACCCCCAC Melampsora_pinitorqua_EU808035 -TGTTGAG?TTGCTTTATTGCGATTCT-TTGTAT?ACCATTAC---CCCC Melampsora_populnea_EU808037 -TGTTGAG?TTGCTTTATTGCGATTCT-TTGTAT?ACCATTAC---CCCC 'Melampsora ribesii-purpureae AY444770' -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATACCCATTAC---CCAC 'Melampsora salicis-albae FJ455127' -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATACCCATTAC---C-AC Melampsora_spp._AB116868 -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATA-CCATTTA---CCCC Melampsora_spp._JF825971 -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATACCCATTAC---C-AC Melampsora_spp._JN646134 -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATCACTATTAC---CACC Melampsora_spp._JN646135 -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATCACTATTAC---CACC Melampsora_spp._JN646171 -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATCACTATTAC---CACC Melampsora_spp._JN646232 -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATAACTATTAC---CCCC Melampsora_spp._JN646237 -TGTTGAGCGCACTTTAATGTGACTCT-TTGTATCACTATTAC---CACC Chrysomyxa_weirii_GU049472 AAACCCAAAGGTATAGTGTG----TGCGCAAGCATAGCATTATACCAGTA Melampsora_epitea_Mel_A CAACCCAGAGGTGCATTGTGGCCTTTAT---GGTTAGCAGTGTATCAGTA Melampsora_epitea_Mel_H CAACCCAGAGGTGCATTGTGGCTTTGCAAAAAGTTAGCAGTGTATCAGTA Melampsora_epitea_Mel_J CAACCCAGAGGTGCATTGTGGCTTTGCAAAAAGTTAGCAGTGTATCAGTA Melampsora_epitea_Mel_R CAACCCAGAGGTGCATTGTGGCCCGTCAAACGGTTAGCAGTGTATCAGTA Melampsora_epitea_Mel_S CAACCCAGAGGTGCATTGTGGCCCGTCAAACGGTTAGCAGTGTATCAGTA 'Melampsora abietis-populi AB116870' CAACCCAGAGGTGCATTGTGGCCTGTAAAAAGGTTAGCAGTGTATCAGTA Melampsora_amygdalinae_AY444776 CAACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTA Melampsora_caprearum_AY444779 CAACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTA Melampsora_coleosporioides_AY652948 CAACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTA Melampsora_epiphylla_AY652947 CAACCCAGAGGTGCATTGTGGCCTTTAACAAGGTTAGCAGTGTATCAGTA Melampsora_epitea_AY471631 CAACCCAGAGGTGCATTGTGGCCTTTAT---GGTTAGCAGTGTATCAGTA Melampsora_epitea_AY471639 CAACCCAGAGGTGCATTGTGGCCGGTCAAACGGTTAGCAGTGTATCAGTA Melampsora_epitea_AY471643 CAACCCAGAGGTGCATTGTGGCTTTGCAAAAAGTTAGCAGTGTATCAGTA Melampsora_epitea_GQ479249 CAACCCAGAGGTGC?TTGTGGCCTTTAT---GGTTAGCAGTGTATCA?T? Melampsora_iranica_FJ386432 CCACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTA 'Melampsora larici-epitea JF825970' CAACCCAGAGGTGCATTGTGGCCTTTCACGAGGTTAGCAGTGTATCAGTA 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' CAACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTA 'Melampsora larici-epitea f.sp. larici-epitea AY444778' CAACCCAGAGGTGCATTGTGGCCTTTCACGAGGTTAGCAGTGTATCAGTA 'Melampsora laricis-pentandrae AY444771' CAACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTA Melampsora_laricis_AB116863 CAACCCAGAGGTGCATTGTGGCCTTTCACGAGGTTAGCAGTGTATCAGTA Melampsora_medusae_AY375274 CAACCCAGAGGTGCATTGTGGCCTTTAATTAGGTTAGCAGTGTATCAGTA Melampsora_medusae_f._sp._tremuloidis_EU808031 CAACCCAGAGGTGCATTGTGGCCTTTAATTAGGTTAGCAGTGTATCAGTA Melampsora_medusae_f.sp._tremuloidis_EU808044 CAACCCAGAGGTGCATTGTGGCCTTTAAYKAGGTTAGCAGTGTATCAGTA 'Melampsora medusae-populina AY375282' CAACCCAGAGGTGCATTGTGGCCTTTAATTAGGTTAGCAGTGTATCAGTA Melampsora_pinitorqua_EU808035 CAACCCAGAGGTGCATTGTGGCCTTTCACGAGGTTAGCAGTGTATCAGTA Melampsora_populnea_EU808037 CAACCCAGAGGTGCATTGTGGCCTTTCACGAGGTTAGCAGTGTATCAGTA 'Melampsora ribesii-purpureae AY444770' CCACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTA 'Melampsora salicis-albae FJ455127' CCACCCAGAGGTGCATTGTGGCCTTTAACGAGGTTAGCAGTGTATCAGTA Melampsora_spp._AB116868 CCACCCAGAGGTGCATTGTGGCCCGTCAAAAGGTTAGCAGTGTATCAGTA Melampsora_spp._JF825971 CCACCCAGAGGTGCATTGTGGCCTTTCACGAGGTTAGCAGTGTATCAGTA Melampsora_spp._JN646134 CAACCCAGAGGTGCATTGTGGCCTTTAT---GGTTAGCAGTGTATCAGTA Melampsora_spp._JN646135 CAACCCAGAGGTGCATTGTGGCCTTTAT---GGTTAGCAGTGTATCAGTA Melampsora_spp._JN646171 CAACCCAGAGGTGCATTGTGGCCTTTAT---GGTTAGCAGTGTATCAGTA Melampsora_spp._JN646232 CAACCCAGAGGTGCATTGTGGCCTTTCACGAGGTTAGCAGTGTATCAGTA Melampsora_spp._JN646237 CAACCCAGAGGTGCATTGTGGCCTTTAT---GGTTAGCAGTGTATCAGTA Chrysomyxa_weirii_GU049472 CGCAT-GCAGAGTT-GACTTTGTATTGCATTACCCATAAGTTACCCCCTT Melampsora_epitea_Mel_A CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-A Melampsora_epitea_Mel_H CGTATTACAAAGTCTGACTTTGTTTTACATTACATATAAGTTACCCCCTA Melampsora_epitea_Mel_J CGTATTACAAAGTCTGACTTTGTCTTACATTACATATAAGTTACCCCCTA Melampsora_epitea_Mel_R CGTATGACAAAGTCTGACTTTGGCTTACATTACCCATAAGTTACCCCC-A Melampsora_epitea_Mel_S CGTATGACAAAGTCTGACTTTGGCTTACATTACCCATAAGTTACCCCC-A 'Melampsora abietis-populi AB116870' CGTATTACAAAGTCTGACTTTGTCTTACATTACCCATAAGTTACCCCCCA Melampsora_amygdalinae_AY444776 CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-A Melampsora_caprearum_AY444779 CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-A Melampsora_coleosporioides_AY652948 CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-A Melampsora_epiphylla_AY652947 CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-A Melampsora_epitea_AY471631 CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-A Melampsora_epitea_AY471639 CGTATGACAAAGTCTGACTTTGGCTTACATTACCCATAAGTTACCCCC-A Melampsora_epitea_AY471643 CGTATTACAAAGTCTGACTTTGTTTTACATTACATATAAGTTACCCCCTA Melampsora_epitea_GQ479249 C?TATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-A Melampsora_iranica_FJ386432 CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-A 'Melampsora larici-epitea JF825970' CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-A 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-A 'Melampsora larici-epitea f.sp. larici-epitea AY444778' CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-A 'Melampsora laricis-pentandrae AY444771' CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTGACCCCC-A Melampsora_laricis_AB116863 CGTATTACAAAGTCTGACTTTGTCTTACATTACATATAAGTTACCCCCCA Melampsora_medusae_AY375274 CGTATGACAAAGGCAA-CTTTGGCTTACATTACATATAAGTTACCCCCCA Melampsora_medusae_f._sp._tremuloidis_EU808031 CGTATGACAAAGGC?AACTTTGGCTTACATTACATATAAGTTACCCCCCA Melampsora_medusae_f.sp._tremuloidis_EU808044 CGTATGACAAAGGC?AACTTTGGCTTACATTACATATAAGTTACCCCCCA 'Melampsora medusae-populina AY375282' CGTATGACAAAGGCGA-CTTTGGCTTACATTACATATAAGTTACCCCCCA Melampsora_pinitorqua_EU808035 CGTATTACAAAGTCTGACTTTGTCTTACATTACATATAAGTTACCCCCCA Melampsora_populnea_EU808037 CGTATTACAAAGTCTGACTTTGTCTTACATTACATATAAGTTACCCCCCA 'Melampsora ribesii-purpureae AY444770' CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-A 'Melampsora salicis-albae FJ455127' CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-A Melampsora_spp._AB116868 CGTATTACAAAGTCTGACTTTGTCTTACATTACCCATAAGTTACCCCCCA Melampsora_spp._JF825971 CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATCATTTACCCCC-A Melampsora_spp._JN646134 CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-A Melampsora_spp._JN646135 CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-A Melampsora_spp._JN646171 CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-A Melampsora_spp._JN646232 CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-A Melampsora_spp._JN646237 CGTATCCCAAAGGC-AACTTTGAGTTACATTACCCATAATTTACCCCC-A Chrysomyxa_weirii_GU049472 TACCTTACACTTAAAAAGTTTTAAGAATGAATCAATACCCCCTAACAATA Melampsora_epitea_Mel_A T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_epitea_Mel_H T---TTACACTTAAGAAGTTTTAAGAATG-----ATACCCTATAATTATA Melampsora_epitea_Mel_J T---TTACACTTAAGAAGTTTTAAGAATG-----ATACCCTATAATTATA Melampsora_epitea_Mel_R T---TTACACTTATACAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_epitea_Mel_S T---TTACACTTATACAGTTTTAAGAATG-----ATACC-TATAATTATA 'Melampsora abietis-populi AB116870' T---TTACACTTATACAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_amygdalinae_AY444776 T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_caprearum_AY444779 T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_coleosporioides_AY652948 T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-CTATATTATA Melampsora_epiphylla_AY652947 T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_epitea_AY471631 T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_epitea_AY471639 T---TTACACTTATACAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_epitea_AY471643 T---TTACACTTAAGAAGTTTTAAGAATG-----ATACCCTATAATTATA Melampsora_epitea_GQ479249 T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_iranica_FJ386432 T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA 'Melampsora larici-epitea JF825970' T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA 'Melampsora larici-epitea f.sp. larici-epitea AY444778' T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA 'Melampsora laricis-pentandrae AY444771' T---TTACACTTAATAAGTTTTAGGATTG-----AGCCCGTAATTATATA Melampsora_laricis_AB116863 T---TTACACTTAAGAAGTTTTAAGAATG-----ATACCCTATAATTATA Melampsora_medusae_AY375274 T---TTACACTTAAGAAGTTTTAAGAATG-----ATACC-TATAACTATA Melampsora_medusae_f._sp._tremuloidis_EU808031 T---TTACACTTAAGAAGTTTTAAGAATG-----ATA?CCTATAACTATA Melampsora_medusae_f.sp._tremuloidis_EU808044 T---TTACACTTAAGAAGTTTTAAGAATG-----ATA?CCTATAACTATA 'Melampsora medusae-populina AY375282' T---TTACACTTAAGAAGTTTTAAGAATG-----ATACC-TATAACTATA Melampsora_pinitorqua_EU808035 T---TTACACTTAAGAAGTTTTAAGAATG-----ATACCCTATAATTATA Melampsora_populnea_EU808037 T---TTACACTTAAGAAGTTTTAAGAATG-----ATACCCTATAATTATA 'Melampsora ribesii-purpureae AY444770' T---TTACACTTAATAAGTTTTAAGAATG-----ATACG-TTTAATTATA 'Melampsora salicis-albae FJ455127' T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_spp._AB116868 T---TTACACTTATACAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_spp._JF825971 T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_spp._JN646134 T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_spp._JN646135 T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_spp._JN646171 T---TTACACTTAATAAGTTTTAAGAATG-----TTACC-TATAATTATA Melampsora_spp._JN646232 T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA Melampsora_spp._JN646237 T---TTACACTTAATAAGTTTTAAGAATG-----ATACC-TATAATTATA Chrysomyxa_weirii_GU049472 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACGCAGT Melampsora_epitea_Mel_A TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_epitea_Mel_H TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_epitea_Mel_J TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_epitea_Mel_R TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_epitea_Mel_S TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT 'Melampsora abietis-populi AB116870' TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_amygdalinae_AY444776 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_caprearum_AY444779 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_coleosporioides_AY652948 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_epiphylla_AY652947 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_epitea_AY471631 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_epitea_AY471639 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_epitea_AY471643 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_epitea_GQ479249 TAACTTTCAGCAATGGATCTCTWGGCTCTCACRTCGATGAAGAACACAGT Melampsora_iranica_FJ386432 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT 'Melampsora larici-epitea JF825970' TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGGACACAGT 'Melampsora larici-epitea f.sp. larici-epitea AY444778' TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGGACACAGT 'Melampsora laricis-pentandrae AY444771' TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_laricis_AB116863 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_medusae_AY375274 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_medusae_f._sp._tremuloidis_EU808031 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_medusae_f.sp._tremuloidis_EU808044 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT 'Melampsora medusae-populina AY375282' TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_pinitorqua_EU808035 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_populnea_EU808037 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT 'Melampsora ribesii-purpureae AY444770' TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT 'Melampsora salicis-albae FJ455127' TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_spp._AB116868 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_spp._JF825971 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_spp._JN646134 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_spp._JN646135 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_spp._JN646171 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_spp._JN646232 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Melampsora_spp._JN646237 TAACTTTCAGCAATGGATCTCTAGGCTCTCACGTCGATGAAGAACACAGT Chrysomyxa_weirii_GU049472 GAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCT Melampsora_epitea_Mel_A GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT Melampsora_epitea_Mel_H GAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCT Melampsora_epitea_Mel_J GAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCT Melampsora_epitea_Mel_R GAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCT Melampsora_epitea_Mel_S GAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCT 'Melampsora abietis-populi AB116870' GAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCT Melampsora_amygdalinae_AY444776 GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT Melampsora_caprearum_AY444779 GAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCT Melampsora_coleosporioides_AY652948 GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT Melampsora_epiphylla_AY652947 GAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCT Melampsora_epitea_AY471631 GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT Melampsora_epitea_AY471639 GAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCT Melampsora_epitea_AY471643 GAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCT Melampsora_epitea_GQ479249 GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT Melampsora_iranica_FJ386432 GAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCT 'Melampsora larici-epitea JF825970' GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT 'Melampsora larici-epitea f.sp. larici-epitea AY444778' GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT 'Melampsora laricis-pentandrae AY444771' GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT Melampsora_laricis_AB116863 GAAATGTGATACGTAATGTGAATCGCAGAATTCAGTGAATCATCGAATCT Melampsora_medusae_AY375274 GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT Melampsora_medusae_f._sp._tremuloidis_EU808031 GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT Melampsora_medusae_f.sp._tremuloidis_EU808044 GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT 'Melampsora medusae-populina AY375282' GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT Melampsora_pinitorqua_EU808035 GAAATGTGATACGTAATGTGAATCGCAGAATTCAGTGAATCATCGAATCT Melampsora_populnea_EU808037 GAAATGTGATACGTAATGTGAATCGCAGAATTCAGTGAATCATCGAATCT 'Melampsora ribesii-purpureae AY444770' GAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCT 'Melampsora salicis-albae FJ455127' GAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCT Melampsora_spp._AB116868 GAAATGTGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCT Melampsora_spp._JF825971 GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT Melampsora_spp._JN646134 GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT Melampsora_spp._JN646135 GAAATGTGATACGTAATGTGAACTGCATAATTCAGTGAATCATCGAATCT Melampsora_spp._JN646171 GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT Melampsora_spp._JN646232 GAAATGTGATACGTAATGTGAATTGCATAATTCAGTGAATCATCGAATCT Melampsora_spp._JN646237 GAAATGTGATACGTAATGTGAATTGCGGAATTCAGTGAATCATCGAATCT Chrysomyxa_weirii_GU049472 TTGAACGCACTTTGCACCTTTTGGTG-ATTCCAAAAGGTACACCTGTTTG Melampsora_epitea_Mel_A TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG Melampsora_epitea_Mel_H TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTG Melampsora_epitea_Mel_J TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTG Melampsora_epitea_Mel_R TTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG Melampsora_epitea_Mel_S TTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG 'Melampsora abietis-populi AB116870' TTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTG Melampsora_amygdalinae_AY444776 TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAGAGGTACACCTGTTTG Melampsora_caprearum_AY444779 TTGAACGCACCTTGCACCTTTTGGTT-ATTCTGAAAGGTACACCTGTTTG Melampsora_coleosporioides_AY652948 TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAGAGGTACACCTGTTTG Melampsora_epiphylla_AY652947 TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG Melampsora_epitea_AY471631 TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG Melampsora_epitea_AY471639 TTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG Melampsora_epitea_AY471643 TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTG Melampsora_epitea_GQ479249 TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG Melampsora_iranica_FJ386432 TTGAACGCACCTTGCACCTTTTGGTTTATTCCGAAAGGTACACCTGTTTG 'Melampsora larici-epitea JF825970' TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG 'Melampsora larici-epitea f.sp. larici-epitea AY444778' TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG 'Melampsora laricis-pentandrae AY444771' TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTG Melampsora_laricis_AB116863 TTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTG Melampsora_medusae_AY375274 TTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAGAGGTACGCCTGTTTG Melampsora_medusae_f._sp._tremuloidis_EU808031 TTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAGAGGTACGCCTGTTTG Melampsora_medusae_f.sp._tremuloidis_EU808044 TTGAACGCACTTTGCACCTTTTGGTT-ATTCCRAGAGGTACGCCTGTTTG 'Melampsora medusae-populina AY375282' TTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAGAGGTACGCCTGTTTG Melampsora_pinitorqua_EU808035 TTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTG Melampsora_populnea_EU808037 TTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTG 'Melampsora ribesii-purpureae AY444770' TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAGAGGTACGCCTGTTTG 'Melampsora salicis-albae FJ455127' TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAGAGGTACACCTGTTTG Melampsora_spp._AB116868 TTGAACGCACTTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG Melampsora_spp._JF825971 TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACGCCTGTTTG Melampsora_spp._JN646134 TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG Melampsora_spp._JN646135 TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG Melampsora_spp._JN646171 TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG Melampsora_spp._JN646232 TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAAGGTACACCTGTTTG Melampsora_spp._JN646237 TTGAACGCACCTTGCACCTTTTGGTT-ATTCCGAAGGGTACACCTGTTTG Chrysomyxa_weirii_GU049472 AATGTCACGAAACCCCCCTCATGGCTAACGCTTTCTCAAAGCGTTAGTGA Melampsora_epitea_Mel_A AATGTCATGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA Melampsora_epitea_Mel_H AATGTCACGAAACCCCCCTCGGCTTTAACACTTTCTAAAAGGGTTATTGA Melampsora_epitea_Mel_J AATGTCACGAAACCCCCCTCGGCTTTAACACTTTCTAAAAGGGTTATTGA Melampsora_epitea_Mel_R AATGTCACAAAACTCCCCTCGGCCTTGACTCTTTCTAAAAGCGTCAGGGA Melampsora_epitea_Mel_S AATGTCACAAAACTCCCCTCGGCCTTGACTCTTTCTAAAAGCGTCAGGGA 'Melampsora abietis-populi AB116870' AATGTCACAAAACTCCCCTCGGCCTTAGCTCTTTCTAAAAGCGTTAGGGA Melampsora_amygdalinae_AY444776 AATGTCATGAAACTCCCCTCGGCTCTAAGACTTTCTAAAAGGATTAGAGA Melampsora_caprearum_AY444779 AATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA Melampsora_coleosporioides_AY652948 AATGTCATGAAACTCCCCTCGGCTCTAAGACTTTCTAAAAGGATTAGAGA Melampsora_epiphylla_AY652947 AATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA Melampsora_epitea_AY471631 AATGTCATGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA Melampsora_epitea_AY471639 AATGTCACAAAACTCCCCTCGGCCTTGACTCTTTCTAAAAGCGTCAGGGA Melampsora_epitea_AY471643 AATGTCACGAAACCCCCCTCGGCTTTAACACTTTCTAAAAGGGTTATTGA Melampsora_epitea_GQ479249 AATGTCATGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA Melampsora_iranica_FJ386432 AATGTCACAAAACTCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA 'Melampsora larici-epitea JF825970' AATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' AATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA 'Melampsora larici-epitea f.sp. larici-epitea AY444778' AATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA 'Melampsora laricis-pentandrae AY444771' AATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTGGAGA Melampsora_laricis_AB116863 AATGTCACAAAACTCCCCTCGGCTTTAACACTTTCTAAAAGGGTTATTGA Melampsora_medusae_AY375274 AATGTCACGAAACCCCCCTCGTCTTTAACGCTTTCTAAAAGAGTTATTGA Melampsora_medusae_f._sp._tremuloidis_EU808031 AATGTCACGAAACCCCCCTCGTCTTTAACGCTTTCTAAAAGAGTTATTGA Melampsora_medusae_f.sp._tremuloidis_EU808044 AATGTCACGAAACCCCCCTCGTCTTTAACGCTTTCTAAAAGAGTTATTGA 'Melampsora medusae-populina AY375282' AATGTCACGAAACCCCCCTCGTCTTTAACGCTTTCTAAAAGAGTTATTGA Melampsora_pinitorqua_EU808035 AATGTCACAAAACTCCCCTCGGCTTTAACACTTTCTAAAAGGGTTATTGA Melampsora_populnea_EU808037 AATGTCACAAAACTCCCCTCGGCTTTAACACTTTCTAAAAGGGTTATTGA 'Melampsora ribesii-purpureae AY444770' AATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTGGAGA 'Melampsora salicis-albae FJ455127' AATGTCATGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA Melampsora_spp._AB116868 AATGTCACAAAACTCCCCTCGGCCTTAACTCTTTCTAAAAGCGTTAGGGA Melampsora_spp._JF825971 AATGTCACAAAACTCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA Melampsora_spp._JN646134 AATGTCATGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA Melampsora_spp._JN646135 AATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA Melampsora_spp._JN646171 AATGTCATGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA Melampsora_spp._JN646232 AATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA Melampsora_spp._JN646237 AATGTCACGAAACCCCCCTCGGCTCTAATGCTTTCTAAAAGGATTAGAGA Chrysomyxa_weirii_GU049472 TGGATTCTGAGTGTTGCTGTTTCTCAACAGCTCACTTTAAATACATGAGC Melampsora_epitea_Mel_A CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC Melampsora_epitea_Mel_H CGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGC Melampsora_epitea_Mel_J CGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGC Melampsora_epitea_Mel_R CGGATTCTGAGTGTTGGCTTTA------GCCTCGCTTTAAATAGATCAGC Melampsora_epitea_Mel_S CGGATTCTGAGTGTTGGCTTTA------GCCTCGCTTTAAATAGATCAGC 'Melampsora abietis-populi AB116870' CGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGC Melampsora_amygdalinae_AY444776 CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC Melampsora_caprearum_AY444779 CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC Melampsora_coleosporioides_AY652948 CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC Melampsora_epiphylla_AY652947 CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC Melampsora_epitea_AY471631 CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC Melampsora_epitea_AY471639 CGGATTCTGAGTGTTGGCTTTA------GCCTCGCTTTAAATAGATCAGC Melampsora_epitea_AY471643 CGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGC Melampsora_epitea_GQ479249 CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC Melampsora_iranica_FJ386432 CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATTGATCAGC 'Melampsora larici-epitea JF825970' CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC 'Melampsora larici-epitea f.sp. larici-epitea AY444778' CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC 'Melampsora laricis-pentandrae AY444771' CGGATTCTGAGTGTTGGCGTGATA--ACGCCTCGCTTTAAATATATCAGC Melampsora_laricis_AB116863 CGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGC Melampsora_medusae_AY375274 CGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGC Melampsora_medusae_f._sp._tremuloidis_EU808031 CGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGC Melampsora_medusae_f.sp._tremuloidis_EU808044 CGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGC 'Melampsora medusae-populina AY375282' CGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGC Melampsora_pinitorqua_EU808035 CGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGC Melampsora_populnea_EU808037 CGGATTCTGAGTGTTGGCGTGTCA--ACGCCTCGCTTTAAATATATCAGC 'Melampsora ribesii-purpureae AY444770' CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC 'Melampsora salicis-albae FJ455127' CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATAGATCAGC Melampsora_spp._AB116868 CGGATTCTGAGTGTTGGCGTGTAC--ACGCCTCGCTTTAAATATATCAGC Melampsora_spp._JF825971 CGGATTCTGAGTGTTGGCGTGA-T--ACGCCTCGCTTTAAATATATCAGC Melampsora_spp._JN646134 CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC Melampsora_spp._JN646135 CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC Melampsora_spp._JN646171 CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC Melampsora_spp._JN646232 CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC Melampsora_spp._JN646237 CGGATTCTGAGTGTTGGCGTGAAT--ACGCCTCGCTTTAAATATATCAGC Chrysomyxa_weirii_GU049472 ACTTTTTGACA-GTCCTGCATGGGTTCAAAAGACGTACTTGATGTTATAT Melampsora_epitea_Mel_A ACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTAT Melampsora_epitea_Mel_H ACTTTTGGACG-GTTCCATGTTAGTTCAAAAGACGTACTTGATGTCGTAT Melampsora_epitea_Mel_J ACTTTTGGACG-GTTCCATGTTAGTTCAAAAGACGTACTTGATGTCGTAT Melampsora_epitea_Mel_R CCTTTTGAGTGAGTTTACTATTAGTTCAAAAGACGGACTCGATGTTGTAT Melampsora_epitea_Mel_S CCTTTTGAGTGAGTTTACTATTAGTTCAAAAGACGGACTCGATGTTGTAT 'Melampsora abietis-populi AB116870' ACTTTTGGATG-GTCTAATATTAGTTCAAAAGACGGACTTGATGTTGTAT Melampsora_amygdalinae_AY444776 ACTTTTGGATG-GTTGAAGATTAGTTCGAAAGACGTACTTGATGTTGTAT Melampsora_caprearum_AY444779 ACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTAT Melampsora_coleosporioides_AY652948 ACTTTTGGATG-GTT?AAGATTAGTTCAAAAGACGTACTTGATGTTGTAG Melampsora_epiphylla_AY652947 ACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTAT Melampsora_epitea_AY471631 ACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTAT Melampsora_epitea_AY471639 CCTTTTGAGTGAGTTTACTATTAGTTCAAAAGACGGACTCGATGTTGTAT Melampsora_epitea_AY471643 ACTTTTGGACG-GTTACATGTTAGTTCAAAAGACGTACTTGATGTCGTAT Melampsora_epitea_GQ479249 ACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTAT Melampsora_iranica_FJ386432 ACTTTTGGATG-GTTGACTATTAGTTCAAAAGACGTACTTGATGTTGTAT 'Melampsora larici-epitea JF825970' ACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTAT 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' ACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTAT 'Melampsora larici-epitea f.sp. larici-epitea AY444778' ACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTAT 'Melampsora laricis-pentandrae AY444771' ACTTTTGGATG-GTTACATGTTAGTTCAAAAGACGTACTTGATGTTGTAT Melampsora_laricis_AB116863 ACTTTTGGATG-GTTCCATGTTAGTTCAAAAGACGTACTTGATGTCGTAT Melampsora_medusae_AY375274 ACTTTTGGATG-GTTACATGTTAGTTCAAAAGACGTACTTGATGTCGTAT Melampsora_medusae_f._sp._tremuloidis_EU808031 ACTTTTGGATG-GTTACATGTTAGTTCAAAAGACGTACTTGATGTCGTAT Melampsora_medusae_f.sp._tremuloidis_EU808044 ACTTTTGGATG-GTTACATGTTAGTTCAAAAGACGTACTTGATGTCGTAT 'Melampsora medusae-populina AY375282' ACTTTTGGATG-GTTACATGTTAGTTCAAAAGACGTACTTGATGTCGTAT Melampsora_pinitorqua_EU808035 ACTTTTGGATG-GTTCCATGTTAGTTCAAAAGACGTACTTGATGTCGTAT Melampsora_populnea_EU808037 ACTTTTGGATG-GTTCCATGTTAGTTCAAAAGACGTACTTGATGTCGTAT 'Melampsora ribesii-purpureae AY444770' ACTTTTGGATG-GTTGAATATTAGTTCGAAAGACGTACTTGATGTTGTAT 'Melampsora salicis-albae FJ455127' ACTTTTGGATG-GTTGAATATTAGTTCGAAAGACGTACTTGATGTTGTAT Melampsora_spp._AB116868 ACTTTTGAATG-GTTTAATATTAGTTCAAAAGACGGACTTGATGTTGTAT Melampsora_spp._JF825971 ACTTTTGGATG-GTTGAATATTAGTTCGAAAGACGTACTTGATGTTGTAT Melampsora_spp._JN646134 ACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTAT Melampsora_spp._JN646135 ACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTAT Melampsora_spp._JN646171 ACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTAT Melampsora_spp._JN646232 ACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTAT Melampsora_spp._JN646237 ACTTTTGGATG-GTTTAGAATTAGTTCAAAAGACGTACTTGATGTTGTAT Chrysomyxa_weirii_GU049472 TGATATC--TCATTAGGATGGTCTTGGGTTGTAA-GACTCTCTGCCTGTG Melampsora_epitea_Mel_A TTATATT--TCATTGAGGCAGTCTTTGGTCTTTATGACTATCCGCTAATA Melampsora_epitea_Mel_H TTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATG Melampsora_epitea_Mel_J TTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATG Melampsora_epitea_Mel_R TTATATG--TCATTGAGGAGCTCTTTGGTCGTACCGACTATCCGCTAATG Melampsora_epitea_Mel_S TTATATG--TCATTGAGGASCTCTTTGGTCGTACCGACTATCCGCTAATG 'Melampsora abietis-populi AB116870' TTATATT--TCATTGAGAAGGTCTTTGGTCGTATCGACTATCCGCTAATA Melampsora_amygdalinae_AY444776 TTATATT--TCGTCGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATC Melampsora_caprearum_AY444779 TTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATA Melampsora_coleosporioides_AY652948 CAATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATC Melampsora_epiphylla_AY652947 TTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATC Melampsora_epitea_AY471631 TTATATT--TCATTGAGGCAGTCTTTGGTCTTTATGACTATCCGCTAATA Melampsora_epitea_AY471639 TTATATG--TCATTGAGGAGCTCTTTGGTCGTACCGACTATCCGCTAATG Melampsora_epitea_AY471643 TTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATG Melampsora_epitea_GQ479249 TTATATT--TCATTGAGGCAGTCTTTGGTCTTTATGACTATCCGCTAATA Melampsora_iranica_FJ386432 TTATATG--TCATTGAGGCAGTCTTTGGTCGTTCCGACTATCCGCTAATA 'Melampsora larici-epitea JF825970' TTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATC 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' TTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATC 'Melampsora larici-epitea f.sp. larici-epitea AY444778' TTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATC 'Melampsora laricis-pentandrae AY444771' TTATATG--TCATTGAGGCAGTCTTTGGTCGTTCCGACTATCCGCTAATA Melampsora_laricis_AB116863 TTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATA Melampsora_medusae_AY375274 TTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATA Melampsora_medusae_f._sp._tremuloidis_EU808031 TTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATA Melampsora_medusae_f.sp._tremuloidis_EU808044 TTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATA 'Melampsora medusae-populina AY375282' TTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATA Melampsora_pinitorqua_EU808035 TTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATA Melampsora_populnea_EU808037 TTATACAATTCATCGAGATGGTCTTTGGTCGTATCGACTATCCGCTAATA 'Melampsora ribesii-purpureae AY444770' TTATATG--TCATTGAGGCAGTCTTTGGTCGTACCGACTATCCGCTAATA 'Melampsora salicis-albae FJ455127' TTATATG--TCGTTGAGTCAGTCTTTGGTCGTTCCGACTATCCGCTAATA Melampsora_spp._AB116868 TTATATT--TCATTGAGAAGGTCTTTGGTCGTACCGACTATCCGCTAATA Melampsora_spp._JF825971 TTATATG--TCATTGAGGCAGTCTTTGGTCGCCACGACTATCCGCTAATA Melampsora_spp._JN646134 TTATATT--TCATTGAGGCAGTCTTTGGTCTTTATGACTATCCGCTAATA Melampsora_spp._JN646135 TTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATC Melampsora_spp._JN646171 TTATATT--TCATTGAGGCAGTCTTTGGTCTTTATGACTATCCGCTAATA Melampsora_spp._JN646232 TTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATC Melampsora_spp._JN646237 TTATATT--TCATTGAGGCAGTCTTTGGTCGTTACGACTATCCGCTAATA Chrysomyxa_weirii_GU049472 TCATGACTTGATGAATAGCTTCGAACCTGACATATATCAAGCTGATGTGA Melampsora_epitea_Mel_A CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_epitea_Mel_H TGAAAACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_epitea_Mel_J TGACGACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_epitea_Mel_R GGACCACTTGCCAAATAGCTTC----CTAAC------------------- Melampsora_epitea_Mel_S GGACCACTTGCCAAATAGCTTC----CTAAA------------------- 'Melampsora abietis-populi AB116870' GGACGACTTGATGAATAGCTTC----CTAAC------------------- Melampsora_amygdalinae_AY444776 CGAAGACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_caprearum_AY444779 CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_coleosporioides_AY652948 CGAAGACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_epiphylla_AY652947 CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_epitea_AY471631 CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_epitea_AY471639 GGACCACTTGCCAAATAGCTTC----CTAAA------------------- Melampsora_epitea_AY471643 TGAAAACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_epitea_GQ479249 CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_iranica_FJ386432 TGAAAACTTGAAGAATAGCTTC----CTAAC------------------- 'Melampsora larici-epitea JF825970' CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- 'Melampsora larici-epitea f.sp. larici-epitea AY444778' CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- 'Melampsora laricis-pentandrae AY444771' TGGACGCTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_laricis_AB116863 TGATGACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_medusae_AY375274 TGACGACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_medusae_f._sp._tremuloidis_EU808031 TGACGACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_medusae_f.sp._tremuloidis_EU808044 TGACGACTTGAAGAATAGCTTC----CTAAC------------------- 'Melampsora medusae-populina AY375282' TGACGACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_pinitorqua_EU808035 TGATGACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_populnea_EU808037 TGATGACTTGAAGAATAGCTTC----CTAAC------------------- 'Melampsora ribesii-purpureae AY444770' CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- 'Melampsora salicis-albae FJ455127' CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_spp._AB116868 GGACAACTTGACGAATAGCTTC----CTAAC------------------- Melampsora_spp._JF825971 TGAAAACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_spp._JN646134 CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_spp._JN646135 CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_spp._JN646171 CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_spp._JN646232 CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- Melampsora_spp._JN646237 CGAAAACTTGAAGAATAGCTTC----CTAAC------------------- Chrysomyxa_weirii_GU049472 CTCTCACAAAGCTCCATGTGTGTGTGGGCATCATATGACCACTCATTGTT Melampsora_epitea_Mel_A --CCTA------------------------TTAAAT-------------- Melampsora_epitea_Mel_H --CCCAA-----------------------TTGAAT-------------- Melampsora_epitea_Mel_J --CCCAA-----------------------TTGAAT-------------- Melampsora_epitea_Mel_R --CCTA------------------------TTAAAY-------------- Melampsora_epitea_Mel_S --CCTA------------------------TTAAAT-------------- 'Melampsora abietis-populi AB116870' --CCTA------------------------TAAATT-------------- Melampsora_amygdalinae_AY444776 --CCTA------------------------TTAAAT-------------- Melampsora_caprearum_AY444779 --CCTA------------------------TTAAAT-------------- Melampsora_coleosporioides_AY652948 --CCTA------------------------TTAAAT-------------- Melampsora_epiphylla_AY652947 --CCTA------------------------TTAAAT-------------- Melampsora_epitea_AY471631 --CCTA------------------------TTAAAT-------------- Melampsora_epitea_AY471639 --CTT--------------------------CAAAT-------------- Melampsora_epitea_AY471643 --CCCAA-----------------------TCGAAT-------------- Melampsora_epitea_GQ479249 --CCTA------------------------TTAAAT-------------- Melampsora_iranica_FJ386432 --CCTA------T-----------------TT-ATT-------------- 'Melampsora larici-epitea JF825970' --CCTA------------------------TTACAT-------------- 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' --CCTA------------------------TTAAAT-------------- 'Melampsora larici-epitea f.sp. larici-epitea AY444778' --CCTA------------------------TTACAT-------------- 'Melampsora laricis-pentandrae AY444771' --CCTA------------------------TTAATT-------------- Melampsora_laricis_AB116863 --CCCA------------------------TTAAAT-------------- Melampsora_medusae_AY375274 --CCCA------------------------TTGAAT-------------- Melampsora_medusae_f._sp._tremuloidis_EU808031 --CCCA------------------------TTGAAT-------------- Melampsora_medusae_f.sp._tremuloidis_EU808044 --CCCA------------------------TTGAAT-------------- 'Melampsora medusae-populina AY375282' --CCCA------------------------TTGAAT-------------- Melampsora_pinitorqua_EU808035 --CCCA------------------------TTAAAT-------------- Melampsora_populnea_EU808037 --CCCA------------------------TTAAAT-------------- 'Melampsora ribesii-purpureae AY444770' --CCCA------T-----------------TAGAAT-------------- 'Melampsora salicis-albae FJ455127' --CCTA------------------------TTCATT-------------- Melampsora_spp._AB116868 --CCTA------------------------T-GAAT-------------- Melampsora_spp._JF825971 --CCTA------------------------TTAACT-------------- Melampsora_spp._JN646134 --CCTA------------------------TTAAAT-------------- Melampsora_spp._JN646135 --CCTA------------------------TTACAT-------------- Melampsora_spp._JN646171 --CCTA------------------------TTAAAT-------------- Melampsora_spp._JN646232 --CCTA------------------------TTAAAT-------------- Melampsora_spp._JN646237 --CCTA------------------------TTACAT-------------- Chrysomyxa_weirii_GU049472 TTTGGGCAGGTACATCATCAGCTTGTGTCATGACTGTTTAGACTTCAAAT Melampsora_epitea_Mel_A ------------------------------TACCC-TTTAGACTTCAAAT Melampsora_epitea_Mel_H ------------------------------TTACC-TTTAGACTTCAAAT Melampsora_epitea_Mel_J ------------------------------TTACC-TTTAGACTTCAAAT Melampsora_epitea_Mel_R ------------------------------TACCC-TTTAGACTTCAAAT Melampsora_epitea_Mel_S ------------------------------TACCC-TTTAGACTTCAAAT 'Melampsora abietis-populi AB116870' ------------------------------AACCC-TTTAGACTTCAAAT Melampsora_amygdalinae_AY444776 ------------------------------TACCC-TTTAGACTTCAAAT Melampsora_caprearum_AY444779 ------------------------------TAACC-TTTAGACTTCAAAT Melampsora_coleosporioides_AY652948 ------------------------------TAACC-TTTAGACTTCAAAT Melampsora_epiphylla_AY652947 ------------------------------TACCC-TTTAGACTTCAAAT Melampsora_epitea_AY471631 ------------------------------TACCC-TTTAGACTTCAAAT Melampsora_epitea_AY471639 ------------------------------TACCC-TTTAGACTTCAAAT Melampsora_epitea_AY471643 ------------------------------TTACC-TTTAGACTTCAAAT Melampsora_epitea_GQ479249 ------------------------------TACC--TTTAGACTTCAAAT Melampsora_iranica_FJ386432 ------------------------------WCACC-TTTAGACTTCAAAT 'Melampsora larici-epitea JF825970' ------------------------------TACCC-TTTAGACTTCAAAT 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' ------------------------------TACCC-TTTAGACTTCAAAT 'Melampsora larici-epitea f.sp. larici-epitea AY444778' ------------------------------TACCC-TTTAGACTTCAAAT 'Melampsora laricis-pentandrae AY444771' ------------------------------TAACC-TTTAGACTTCAAAT Melampsora_laricis_AB116863 ------------------------------TTACC-TTTAGACTTCAAAT Melampsora_medusae_AY375274 ------------------------------TTACC-TTTAGACTTCAAAT Melampsora_medusae_f._sp._tremuloidis_EU808031 ------------------------------TTACC-TTTAGACTTCAAAT Melampsora_medusae_f.sp._tremuloidis_EU808044 ------------------------------TTACC-TTTAGACTTCAAAT 'Melampsora medusae-populina AY375282' ------------------------------TTACC-TTTAGACTTCAAAT Melampsora_pinitorqua_EU808035 ------------------------------TTACC-TTTAGACTTCAAAT Melampsora_populnea_EU808037 ------------------------------TTACC-TTTAGACTTCAAAT 'Melampsora ribesii-purpureae AY444770' ------------------------------TACCC-TTTAGACTTCAAAT 'Melampsora salicis-albae FJ455127' ------------------------------TAACC-TTTAGACTTCAAAT Melampsora_spp._AB116868 ------------------------------TACCT-TTTAGACTTCAAAT Melampsora_spp._JF825971 ------------------------------TTACC-TTTAGACTTCAAAT Melampsora_spp._JN646134 ------------------------------TACCC-TTTAGACTTCAAAT Melampsora_spp._JN646135 ------------------------------TACCC-TTTAGACTTCAAAT Melampsora_spp._JN646171 ------------------------------TACCC-TTTAGACTTCAAAT Melampsora_spp._JN646232 ------------------------------TACCC-TTTAGACTTCAAAT Melampsora_spp._JN646237 ------------------------------TAACC-TTTAGACTTCAAAT Chrysomyxa_weirii_GU049472 CAGGTGGGATTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG Melampsora_epitea_Mel_A CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG Melampsora_epitea_Mel_H CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG Melampsora_epitea_Mel_J CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG Melampsora_epitea_Mel_R CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG Melampsora_epitea_Mel_S CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG 'Melampsora abietis-populi AB116870' CAGGTGGGACTACCCGCTGAACTTAA------------------------ Melampsora_amygdalinae_AY444776 CAGGTGGGACTACCCGCTGAACTTAA------------------------ Melampsora_caprearum_AY444779 CAGGTGGGACTACCCGCTGAACTTAA------------------------ Melampsora_coleosporioides_AY652948 CAGGTGGGACTACCCGCTGAACTTAA------------------------ Melampsora_epiphylla_AY652947 CAGGTGGGACTACCCGCTGAACTTAA------------------------ Melampsora_epitea_AY471631 CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG Melampsora_epitea_AY471639 CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG Melampsora_epitea_AY471643 CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG Melampsora_epitea_GQ479249 CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG Melampsora_iranica_FJ386432 CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG 'Melampsora larici-epitea JF825970' CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' CAGGTGGGACTACCCGCTGAACTTAA------------------------ 'Melampsora larici-epitea f.sp. larici-epitea AY444778' CAGGTGGGACTACCCGCTGAACTTAA------------------------ 'Melampsora laricis-pentandrae AY444771' CAGGTGGGACTACCCGCTGAACTTAA------------------------ Melampsora_laricis_AB116863 CAGGTGGGACTACCCGCTGAACTTAA------------------------ Melampsora_medusae_AY375274 CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---- Melampsora_medusae_f._sp._tremuloidis_EU808031 CAGGTGGGACTACCCGCTGAACTTAA------------------------ Melampsora_medusae_f.sp._tremuloidis_EU808044 CAGGTGGGACTACCCGCTGAACTTAA------------------------ 'Melampsora medusae-populina AY375282' CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---- Melampsora_pinitorqua_EU808035 CAGGTGGGACTACCCGCTGAACTTAA------------------------ Melampsora_populnea_EU808037 CAGGTGGGACTACCCGCTGAACTTAA------------------------ 'Melampsora ribesii-purpureae AY444770' CAGGTGGGACTACCCGCTGAACTTAA------------------------ 'Melampsora salicis-albae FJ455127' CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG Melampsora_spp._AB116868 CAGGTGGGACTACCCGCTGAACTTAA------------------------ Melampsora_spp._JF825971 CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAG Melampsora_spp._JN646134 CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---- Melampsora_spp._JN646135 CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---- Melampsora_spp._JN646171 CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---- Melampsora_spp._JN646232 CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---- Melampsora_spp._JN646237 CAGGTGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA---- Chrysomyxa_weirii_GU049472 AAAATAACCATGATTCCCTTAGTAACGGCGAGTGAACTGGGAGAAGCC-- Melampsora_epitea_Mel_A AAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCA Melampsora_epitea_Mel_H AAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCA Melampsora_epitea_Mel_J AAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCA Melampsora_epitea_Mel_R AAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCA Melampsora_epitea_Mel_S AAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCA 'Melampsora abietis-populi AB116870' -------------------------------------------------- Melampsora_amygdalinae_AY444776 -------------------------------------------------- Melampsora_caprearum_AY444779 -------------------------------------------------- Melampsora_coleosporioides_AY652948 -------------------------------------------------- Melampsora_epiphylla_AY652947 -------------------------------------------------- Melampsora_epitea_AY471631 AAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCA Melampsora_epitea_AY471639 AAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACACGGGAAAGCCCA Melampsora_epitea_AY471643 AAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGGAAAAGCCC Melampsora_epitea_GQ479249 AAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCA Melampsora_iranica_FJ386432 AAAATAACTATGATTCCCYTAGTAACGGCGAGTGAACAGGGARAAGCCCA 'Melampsora larici-epitea JF825970' AAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCA 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' -------------------------------------------------- 'Melampsora larici-epitea f.sp. larici-epitea AY444778' -------------------------------------------------- 'Melampsora laricis-pentandrae AY444771' -------------------------------------------------- Melampsora_laricis_AB116863 -------------------------------------------------- Melampsora_medusae_AY375274 -------------------------------------------------- Melampsora_medusae_f._sp._tremuloidis_EU808031 -------------------------------------------------- Melampsora_medusae_f.sp._tremuloidis_EU808044 -------------------------------------------------- 'Melampsora medusae-populina AY375282' -------------------------------------------------- Melampsora_pinitorqua_EU808035 -------------------------------------------------- Melampsora_populnea_EU808037 -------------------------------------------------- 'Melampsora ribesii-purpureae AY444770' -------------------------------------------------- 'Melampsora salicis-albae FJ455127' AAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAGAAGCCCA Melampsora_spp._AB116868 -------------------------------------------------- Melampsora_spp._JF825971 AAAATAACTATGATTCCCTTAGTAACGGCGAGTGAACAGGGAAAAGCCCA Melampsora_spp._JN646134 -------------------------------------------------- Melampsora_spp._JN646135 -------------------------------------------------- Melampsora_spp._JN646171 -------------------------------------------------- Melampsora_spp._JN646232 -------------------------------------------------- Melampsora_spp._JN646237 -------------------------------------------------- Chrysomyxa_weirii_GU049472 ---------------------------------- Melampsora_epitea_Mel_A AATTTGTAATCTGGCACTTTTT-ACAAGTGTCCG Melampsora_epitea_Mel_H AATTTGTAATCTGGCATCTTTT-ACAGATGTCCG Melampsora_epitea_Mel_J AATTTGTAATCTGGCATCTTTT-ACAGATGTCCG Melampsora_epitea_Mel_R AATTTGTAATCTGGCATCTTTTCACAGGTGTCCG Melampsora_epitea_Mel_S AATTTGTAATCTGGCATCTTTTCACAGGTGTCCG 'Melampsora abietis-populi AB116870' ---------------------------------- Melampsora_amygdalinae_AY444776 ---------------------------------- Melampsora_caprearum_AY444779 ---------------------------------- Melampsora_coleosporioides_AY652948 ---------------------------------- Melampsora_epiphylla_AY652947 ---------------------------------- Melampsora_epitea_AY471631 AATTTGTAATCTGGCACTTTTT-ACAAGTGTCCG Melampsora_epitea_AY471639 A-TTTGTAATCTGGCATCTTTTCACAGGTGTCCG Melampsora_epitea_AY471643 A-TTTGTAATCTGGCATCTTTT-ACAGATGTCCG Melampsora_epitea_GQ479249 AATTTGTAATCTGGCACTTTTT-ACAAGTGTCCG Melampsora_iranica_FJ386432 AATTTGTAATCTGGCACTTTTT-ACAAGTGTCCG 'Melampsora larici-epitea JF825970' AATTTGTAATCTGGCACTTTTT-ACAAGTGTCCG 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777' ---------------------------------- 'Melampsora larici-epitea f.sp. larici-epitea AY444778' ---------------------------------- 'Melampsora laricis-pentandrae AY444771' ---------------------------------- Melampsora_laricis_AB116863 ---------------------------------- Melampsora_medusae_AY375274 ---------------------------------- Melampsora_medusae_f._sp._tremuloidis_EU808031 ---------------------------------- Melampsora_medusae_f.sp._tremuloidis_EU808044 ---------------------------------- 'Melampsora medusae-populina AY375282' ---------------------------------- Melampsora_pinitorqua_EU808035 ---------------------------------- Melampsora_populnea_EU808037 ---------------------------------- 'Melampsora ribesii-purpureae AY444770' ---------------------------------- 'Melampsora salicis-albae FJ455127' AATTTGTAATCTGGCACTTTTT-ACGAGTGTCCG Melampsora_spp._AB116868 ---------------------------------- Melampsora_spp._JF825971 AATTTGTAATCTGGCACTTTTT-ACAAGTGTCCG Melampsora_spp._JN646134 ---------------------------------- Melampsora_spp._JN646135 ---------------------------------- Melampsora_spp._JN646171 ---------------------------------- Melampsora_spp._JN646232 ---------------------------------- Melampsora_spp._JN646237 ---------------------------------- ; END; BEGIN TREES; Title Trees_from_Fig._4_Final_Bayesian_Analysis_of_the_ITS_region; LINK Taxa = 'Taxa_ITS region_Fig4'; TRANSLATE 1 Chrysomyxa_weirii_GU049472, 2 Melampsora_epitea_Mel_A, 3 Melampsora_epitea_Mel_H, 4 Melampsora_epitea_Mel_J, 5 Melampsora_epitea_Mel_R, 6 Melampsora_epitea_Mel_S, 7 'Melampsora abietis-populi AB116870', 8 Melampsora_amygdalinae_AY444776, 9 Melampsora_caprearum_AY444779, 10 Melampsora_coleosporioides_AY652948, 11 Melampsora_epiphylla_AY652947, 12 Melampsora_epitea_AY471631, 13 Melampsora_epitea_AY471639, 14 Melampsora_epitea_AY471643, 15 Melampsora_epitea_GQ479249, 16 Melampsora_iranica_FJ386432, 17 'Melampsora larici-epitea JF825970', 18 'Melampsora larici-epitea f.sp. larici-daphnoides AY444777', 19 'Melampsora larici-epitea f.sp. larici-epitea AY444778', 20 'Melampsora laricis-pentandrae AY444771', 21 Melampsora_laricis_AB116863, 22 Melampsora_medusae_AY375274, 23 Melampsora_medusae_f._sp._tremuloidis_EU808031, 24 Melampsora_medusae_f.sp._tremuloidis_EU808044, 25 'Melampsora medusae-populina AY375282', 26 Melampsora_pinitorqua_EU808035, 27 Melampsora_populnea_EU808037, 28 'Melampsora ribesii-purpureae AY444770', 29 'Melampsora salicis-albae FJ455127', 30 Melampsora_spp._AB116868, 31 Melampsora_spp._JF825971, 32 Melampsora_spp._JN646134, 33 Melampsora_spp._JN646135, 34 Melampsora_spp._JN646171, 35 Melampsora_spp._JN646232, 36 Melampsora_spp._JN646237; TREE Fig_4_ITS_Final_Bayesian_Concensus = (1:0.331566,(((25:0.002431,((23:0.002006,22:0.002681)0.24:0.002518,24:0.002039)0.25:0.002494)1.00:0.04755,((26:0.001966,27:0.001993)0.34:0.001972,21:0.001907)0.99:0.011841)0.83:0.008126,(4:0.003117,(3:0.001783,14:0.012208)1.00:0.009011)1.00:0.018771)1.00:0.045783,((((5:0.001873,(13:0.01091,6:0.001715)0.95:0.003415)1.00:0.046743,30:0.00924)0.95:0.010225,7:0.020894)1.00:0.036915,(((((((((15:0.001835,12:0.001792)0.14:0.001787,(34:0.004017,32:0.00199)0.16:0.001966)0.14:0.001788,2:0.001771)1.00:0.008775,36:0.010707)0.47:0.003423,33:0.004781)1.00:0.008115,(35:0.002191,(19:0.005637,17:0.001938)0.58:0.003206)0.50:0.003682)0.44:0.004339,(((10:0.019887,8:0.008353)1.00:0.022785,18:0.005981)0.27:0.002441,11:0.005188)0.39:0.004118)0.85:0.005811,9:0.009469)0.92:0.010576,(((16:0.013536,31:0.018272)0.59:0.008658,(29:0.014567,28:0.022574)0.78:0.00761)0.85:0.008127,20:0.054313)0.91:0.010642)1.00:0.062426)0.46:0.010298); TREE con_all_compat = (1:0.331566,(((25:0.002431,((23:0.002006,22:0.002681):0.002518,24:0.002039):0.002494):0.04755,((26:0.001966,27:0.001993):0.001972,21:0.001907):0.011841):0.008126,(4:0.003117,(3:0.001783,14:0.012208):0.009011):0.018771):0.045783,((((5:0.001873,(13:0.01091,6:0.001715):0.003415):0.046743,30:0.00924):0.010225,7:0.020894):0.036915,(((((((((15:0.001835,12:0.001792):0.001787,(34:0.004017,32:0.00199):0.001966):0.001788,2:0.001771):0.008775,36:0.010707):0.003423,33:0.004781):0.008115,(35:0.002191,(19:0.005637,17:0.001938):0.003206):0.003682):0.004339,(((10:0.019887,8:0.008353):0.022785,18:0.005981):0.002441,11:0.005188):0.004118):0.005811,9:0.009469):0.010576,(((16:0.013536,31:0.018272):0.008658,(29:0.014567,28:0.022574):0.00761):0.008127,20:0.054313):0.010642):0.062426):0.010298); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 884; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 884; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 884; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1388777898413; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7509290898947427967; tell It; setDefaultOrder 35 33 16 11 0 17 15 31 27 14 26 29 5 23 1 3 20 21 13 9 10 28 19 24 2 4 8 7 6 22 18 34 32 25 12 30; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1107644271197650901; mqVersion 274; checksumv 0 2 308220021 null getNumChars 884 numChars 884 getNumTaxa 36 numTaxa 36 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 597544.0 sumSquares -2.3058430092136894E19 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 582; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1309 1024; setLocation 160 65; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #7509290898947427967 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #7509290898947427967; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 379; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 727 957; setLocation 160 65; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 727 957; setLocation 160 65; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7509290898947427967 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1731.1388772580361.7247889335600567685; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 727 957; setLocation 160 65; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.interchange; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 2; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames on; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((((((5:0.001873,(13:0.01091,6:0.001715)0.95:0.003415)1.00:0.046743,30:0.00924)0.95:0.010225,7:0.020894)1.00:0.036915,(((((((((15:0.001835,12:0.001792)0.14:0.001787,(34:0.004017,32:0.00199)0.16:0.001966)0.14:0.001788,2:0.001771)1.00:0.008775,36:0.010707)0.47:0.003423,33:0.004781)1.00:0.008115,(35:0.002191,(19:0.005637,17:0.001938)0.58:0.003206)0.50:0.003682)0.44:0.004339,(((10:0.019887,8:0.008353)1.00:0.022785,18:0.005981)0.27:0.002441,11:0.005188)0.39:0.004118)0.85:0.005811,9:0.009469)0.92:0.010576,(((16:0.013536,31:0.018272)0.59:0.008658,(29:0.014567,28:0.022574)0.78:0.00761)0.85:0.008127,20:0.054313)0.91:0.010642)1.00:0.062426)0.46:0.010298,(((25:0.002431,((23:0.002006,22:0.002681)0.24:0.002518,24:0.002039)0.25:0.002494)1.00:0.04755,((26:0.001966,27:0.001993)0.34:0.001972,21:0.001907)0.99:0.011841)0.83:0.008126,(4:0.003117,(3:0.001783,14:0.012208)1.00:0.009011)1.00:0.018771)1.00:0.045783),1:0.331566);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1107644271197650901 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 727 957; setLocation 160 65; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;