#NEXUS
[written Wed Mar 25 19:01:06 JST 2015 by Mesquite  version 3.02 (build 681) at dai-no-mbp.private.pha.nihon-u.ac.jp/192.168.20.176]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=18;
	TAXLABELS
		RNMal36 RNaseMve36 RNaseMel36 RNasePo36 RNaseMpa36 RNaseRh RNaseUra26 'AOR_1_1816174' Pc06g00430 RNasePo38 'LACBIDRAFT_186136' 'LACBIDRAFT_235838' RNaseHe38 RNasePo28 Ypl123cp RNasePo30 'LACBIDRAFT_187062' RNaseHe30 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=497;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	RNMal36            ----------MKFTTI-AASLALA-------GLSVVSALPVDHTLFLR-RAVTCPTD-VLSCSSGSGGVDSCCLPEMGLILLVQQWY---PGL------------GPANEFTMHGLWPDTCSGGQGPANGCDSARIYT--------------------DIETRLQNY---------PKASDGFVNDMNTYWSSYKGDNNAFWAHEWSKHGTCVSNLAPACD-----TNYVQDQDVYEYFSKAMALRSQYNLYQALSTAGINPGS--TPNVADMHAAIKAAF-GVDAQINCN-SGV-LSEIWLFFNIKNH---DEYVATNPL--SIGSCKGA--ISYPVKGGSVQPSV--QPSV----------------QP--SVTK-------PPTT-STASVSVKPSATSPSGSIPTGKQTGSCP----TNGATVC----VAPGTSNQYSKCNQGTWILNQCKSGLVCYSDT---------------NIKTHC---------A--
	RNaseMve36         ----------MKFLSI-AASLAVA-------TLSVVSALPVRSSIFEK-R-DVCPAD-VLSCTSASSGVDTCCLPDMGLILLVQQWY---NGL------------GPADEFTMHGLWPDTCSGGQGPSSGCDAARVYN--------------------DIDSRLQNY---------PSTPAGFMDDMNTYWSSYNGDNNVFWSHEWSKHGTCVSTLAPSCS-----ANYVQDQDVYNYFSKALALRSQYNLYNALAAKNILPGS--NPNVADMHTAIKAAF-GVDAQINCL-SGV-LSEIWIFFRVQNG---DQYVPAAPL--TTGSCKGA--ISYPIKSGSVTPPT----PP----------------TSTTKT-----------ST-TAASAS----GTSPAGSIPTGKQSGSCS----TNGATVC----VSPGSSQYYSKCNQGTWVLNQCKSGLSCYSDT---------------QTTTHC---------A--
	RNaseMel36         ----------MKFLTI-AASLAVA-------ALSTVSALPVNMSAFQP-RALTCPAD-VLSCTSASAGLDGCCVPSMGLILLVQQWY---NGL------------GPANEFTMHGLWPDTCSGGQGPTNGCDAARVYT--------------------DIETRLQNY---------PGTPAGFLDEMNTYWSSYKGDNNAFWAHEWSKHGTCVSTLAPSCS-----SNYVQDQDVYAYFSTALALRKQYNLYNVLAGAGITPGS--TPDVDDMHSAIKAAY-GVDAQINCA-SGV-LSEIWLFYKVNSA---GTYTPVEAL--TSGSCSGA--ISYPVKSGTVPPTS-SVKPT----------------STTTKAST---------TT-TTRTTT----ATATPTGLPEGRQYGSCS----TNGATVC----VKNGSSNQYSKCNSGTWILNQCKSGLVCYSDT---------------VTSTHC---------A--
	RNasePo36          ----------MKFTTI-AASLALA-------AMTVVSALPLSNSIFSR-RADTCPAD-VLSCTSGSEGVSTCCLPEMGLILLTLQWY---NGL------------GPADEFTIHGLWPDTCSGGQGPASGCDAKRVYD--------------------NIDTRLKNY---------PGTPAGFMDELNLYWASYKGDNNAFWAHEWSKHGTCISNLTPSCK-----SNYVQDEDVYAYFSKTLALRRQYNLYKVLADAGITPGS--NPDTTAMHTAIKNAY-GVDAQINCS-GGK-LSEIWLYFKVKNT---DQYVPVEPL--TKGSCKGF--IDYFVKDGSAQPPTTSTKPP----------------ATTTKT-----------TT-TT--------ATSPSGPIPTGIQSGSCP----TEGATVC----VSPGESNQYSKCNQGKWVLNQCKTGLKCHSDT---------------NIKTHC---------A--
	RNaseMpa36         ----------MKFMTL-AASVALA-------ALSLTSARPM----LAA-RQATCPAN-VLSCSSASSGIDGCCLPTMGTLLLVQQWY---TTL------------GPSNQFTMHGLWPDTCSGGQGPSNGCDSSRVYT--------------------DVQTRLENY---------SGTGASIMDDMNTYWGSYTGDNNSFWSHEWSKHGTCVSTLAPTCH-----SDWVQDQDVYTFFSTALGLRKQYDLYAALANAGITPGS--NPNVSDMHAAIQTAF-GVDAEINCA-SGA-LSEIWLTFNIQNG---NQYVLGNAL--SQGSCSGS--ISYPEKSGSPVTVPSSTTGPIS--------------HSTTQP-----------ST-PT-STS----GSGSGSGLPSGRQTGSCS----TNGATVC----VSSGSSNQYSKCNSGSWNLNQCKKGLVCYSDT---------------QTSTHC---------A--
	RNaseRh            ---------------M-KAVLALA-------TLIG-----------ST-LASSCSST-ALSCSN-SANSDTCCSPEYGLVVLNMQWA---PGY------------GPDNAFTLHGLWPDKCSGAYAPSGGCDSNRASS--------------------SIASVIKS------------KDSSLYNSMLTYWPSNQGNNNVFWSHEWSKHGTCVSTYDPDCY-----DNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITPGG--TYTATEMQSAIESYF-GAKAKIDCS-SGT-LSDVALYFYVRGR---DTYVITDAL--STGSCSGD--VEYPTK--------------------------------------------------------------------------------------------------------------------------------------------------------------
	RNaseUra26         M---------FKSTLL-SVVAATA-------MMLA----------VPS-VDAACSTT-ALSCSS-SASTNTCCTPKYGLVVLVQQWV---PGY------------GPSDAFTLHGLWPDACDGTYAPSNGCDSSREYT--------------------NVETIVQNY-----------GTSTLYSDMQTYWPSDAESNNDFWSHEWSKHGTCVSTLAPTCY----GSSYTQYEDVTDYLTKVLALRAQYDLYTALANAKITPGG--SYTYTAMQNAIKAAF-GVTAKIDCS-SGT-LSDIEINFNVKGT---STYVPVNT---TGSTCSGT--VKYPTK--------------------------------------------------------------------------------------------------------------------------------------------------------------
	'AOR_1_1816174'    MP--------STPSLPSMGMLALG-------AMQLAAGAVF--------EFPSCPKDIPFSCQNSTAVADSCCFNSPGGALLQTQFWDTNPPS------------GPSDSWTIHGLWPDNCDGSY--GQFCDKSREYS--------------------NITAILQEQ-----------GRTELLSYMKKYWPNYEGDDEEFWEHEWNKHGTCINTIEPSCY-----KDYSPQKEVGDYLQKTVDLFKGLDSYKALAKAGIVPDSSKTYKRSEIESALAAIHDGKKPYISCE-DGA-LNEIWYFYNIKGNAITGEYQPIDTL--TSPGCSTSG-IKYLPKKSENS----TASA-----------------WKFRSDKA---------------------------------------------------------------------------------------------------------SQSVRFN--------
	Pc06g00430         ----------MFQSQSSKGMLALA-------AMGLITGSTA--------SLETCESSTPFSCSSSSA-EPTCCFNSPGGALLLTQFWDTDPST------------GPKDSWTIHGLWPDNCDGTY--EASCDSKRAYS--------------------NITAILQDQ-----------NLGDLVDYMDEYWVDMNGDNEDFWSHEWNKHGTCINTIEPSCY-----SDYKAQEEVGDYFQKTVELFKTLDTYKALDAAGITPSTSKTYSLSEIQEALTDMH-GASVYLGCS-SGE-LNEAWYFYNVKGNVVDGTYKAVETL--TDSGCPKTG-IKYLPK--------------------------------------------------------------------------------------------------------------------------------------------------------------
	RNasePo38          ML-----RLIILVAAA-SAGLASP-------FFSQPFDLTTR---ADS-LTSSCSTTGSASCHNTSSVSNLCCFESPGGLLLQTQFWDTNPST------------GPSDKWTIHGLWPDNCDGTF--EQNCDPSRAYT--------------------NIASLLSSG-----------GASDTLSFMQTNWVDINGQNEQFWAHEWSTHGTCMSTLHTSCI----PSGSVRGTEAVAFFQTVVKLYKTLPTFDWLAGQGIRPSTTQTFTLATLTSALKTASGGFTPALDCS-SGA-LNQISWYFNLRGSIIDGTFVPINAP--KAGSCPSSG-IRYPPKSGSGT----PTTPPSNPGGLPARATIHAI-KSGSQIGG-LLSLGTWSTQ-TLATFT----LTGTASSFTMTSSKGNCGV---SGGSFSC----GSGVNPTTFSAVTSGSDLLLASGGSTAWGSDGTPSGSTVFTVF----TGSSHSQDYTLTIVGA--
	'LACBIDRAFT_186136' MR-----SAVLLASFV-STALASP-------FLGQTDILGLF---KRS-VSSGCSTTGPASCHNTSVVSNLCCFEAPG-------FWDTNPST------------GPTNSWTIHGLWPDNCDTTF--SSNCDPSRAYT--------------------NVAGLLTAN-----------GASDTLAYMQTYWVDINGNNEAFWEHEWAKHGTCMSTLKPACL----PSGSPTGLEAVLFFQTVVRLFQTLPTYTWLANVGITPSTSATYTLSTLTSALKTASGGFTPALDCT-SGA-LNGISWYFNLKGSVIDGTFVAIDAP--LAGSCPSSG-IKYPPKSGGSTVRIIDFSA---PASLPTKATIKAL-RSGSAVGG-LLSLATWSTQ-TLATFT----ISGTSSSFTMTSSKGNCGV---SGGQLAC----GSGVSLTSFSAVSSGSNILLASGGSTSFSSDGIPSGTTVYTVY----TGSGHANGYTLSIVGS--
	'LACBIDRAFT_235838' MR----ATAVVLASVI-GAALASP-------SPAQIVLNPLQ---LST-PLSSCPANGPISCHNSSRIPDLCCFESPGGLLLQTQFWDTHPST------------GPEDSWTIHGLWPDNCDTTF--NENCDPSRAYT--------------------DIASLLTDN-----------GATDTLNFMETYWVDMHGENEQFWEHEWSKHGTCMSTLNPQCL----PSGSPDGFEAVLFFQTVVSLFQSLPTYTWLANEGITPSHDRTYTLSELLSALKRASGGIEPALDCK-SGA-LNAVSWYFNVKGSIADGTFVPINAP--KHGDCHSSSRIKYLPKTRH-----------------------------------------------------------------------------------------------------------------------------------------------------------
	RNaseHe38          MLRAFLTTSAILASVV-LANARLP-------GFSSADSHSL----FKR-ISSGCSTSGAASC-SSGSVGNTCCTESPGGLLLQTQFWDTNPST------------GPSNSWTIHGLWPDNCDGTF--EENCDSSRDYT--------------------NIAGLLQAQ-----------GASDTLSFMQEFWVDINGQNEQFWEHEWATHGTCMSTLEPSCL----PSGSPTGAEAVAFYQTVVKLFKSLPTYDWLSQEGITPSSSKTYTLSDFTSALNKAS-GFTPALNCN-GNT-VNQISWYFHLKGSIIDGNFVAIDTP--ASGSCPSSG-LKYPLKSGSSTSTSAGTSPTGSPGGLPSKATISALTSSGSSLGG-LLSAGKWSTQ-TPGTYT----ISGSSNSFTLTSSKGACAV---TSGEFAC----G-GSSSSTFSAVTSGSNLLLAFQGSTAFSSDASPSGQAQETVF----TGSSHSVQFSLTLIST--
	RNasePo28          ML-----TVLFTASLLTASSLAGPISEAGRSLRGLVDSPAL----FPRGNECSASGNLPTSCGNTTAVENLCCFEHPGGLLLQTQFWDTEPAN------------GPADSWTIHGLWPDKCDGTY--DSFCDPSRDYK--------------------DISQVLNSN-----------DASDTLNFMKEYWLDRDGDHDKFWKHEWSKHGTCMSTIKPTCL-----SDTEHGADAAAYFDTTVKLFKDLPTHKWLADAGILPTDNQTFTYDALAEALKKGK-GVSPRIDCK-DQT-LKEVVWYFNVKGSAMAGEFIPIDAPEGKKGSCPKDN-IKYTPKSTKAK----GKKP-----------------KKGKKN--------------------------------------------------------------------------------------------------------------------------
	Ypl123cp           ----------MLLKNL-HSLLQLP-------IFSN---------GADKGIEPNCPINIPLSCSNKTDIDNSCCFEYPGGIFLQTQFWNYFPSKNDLNETELVKELGPLDSFTIHGLWPDNCHGGY--QQFCNRSLQID--------------------DVYYLLHDKKFNNNDTSLQISGEKLLEYLDLYWKSNNGNHESLWIHEFNKHGTCISTIRPECYTEWGANSVDRKRAVYDYFRITYNLFKKLDTFSTLEKNNIVPSVDNSYSLEQIEAALSKEFEGKKVFIGCDRHNS-LNEVWYYNHLKGSLLSEMFVPMDSL-AIRTNCKKDG-IKFFPKGYVPTFRRRPNKGARYRG----VVRLSNI-NNGDQMQGFLIKNGHWMSQGTPANYEL---IKSPYGNYYLRTNQGFCDIISSSSNELVCKFRNIKDAGQFDFDPTKGGDGYI-GYSGNYNWGGDTYPRRRNQSPIFSVDDEQNSKKYKFKLKFIKN--
	RNasePo30          MV----LRLSLAVTLA-ALSVTAVQAK-------SHRHIPDT---FSS-IASCVDEPSTFSCENTAPINNTCCSPTPGGLVLQTQFWSTWTGL------ERKGQLLPEKSWTIHGLWPDNCDGSF--EQYCDLSRQFDPTPSPAILPDGTVVPAWKGPGIDTFVAQF-----------GRQDLLDFMQKYWINQGAPNVDFWGHEFSKHATCTSTFDVACY-----QSYKKHQDVVNFFDAVVRAFHRYPTFSMLASAGIVPSNRTTYSLDSIQKALVSQT-GAIPFLGCQANGTVLTEVWYFSHVFGTEQYGAYKNVDST--TNSTCSKTAGIWYYERTKSSEREVRA----------------------------------------------------------------------------------------------------------------------------------------------------
	'LACBIDRAFT_187062' MI--------TTLTVI-AFSVSVAQGS----IFGNQLSIPNT---SPN-LTACVDQPSFFSCENSTAIKNTCCSPTPGGLVLQTQFWSTWTGL------EKKGQKLPKGSWTIHGLWPDNCDGSF--EQYCDLSRQYDPTPSPKVLPNGIVVPIYKGPGVDTFIKQF-----------GRQDLLTYMENYWINQGAPNVDFWGHEFSKHATCTSTFDVACY----GPTYKKHQEVIDFFDATVRAFHQYPTFDMLAAAGITPSNKTSTTLTKLQNAIKSQT-GAVPYFGCSNNGTVLSEVWYFSHVYGTEQFGTYKTLDSS--SPSSCSKDGPVWYHERTGASEREVRH----------------------------------------------------------------------------------------------------------------------------------------------------
	RNaseHe30          MV----AVYSIVVLAV-ASTVYAGWAP-------PVPGLPNT---FPN-IAACVDQPLEYSCENTTTLKNTCCSPTPGGLVLQTQFWDTYTGF------EKKGQLLPKDSWTIHGLWPDNCDGSF--EQYCDLSRQYDPA------PDDKTVPAYHGPGVDTFIKKF-----------GRKDLLDFMNKYWVSQGSPSASFWAHEFSKHATCTSTFDVACY----GPGYKKHQDVVDFYDAVVRAFHMFPTWTMLAASGITPSNKTTYSLSQFQTALKAQS-GAIPYLGCGHNGTVLQEVWYFNHVSGTEQFGRFKPVDST--TKSSCNATG-IHYYERSPKSVREVRDEL--------------------------------------------------------------------------------------------------------------------------------------------------

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  497;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  18;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  497;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  497;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1427277666828;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 7868862206076270459;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 1742484121678962866;
			mqVersion 302;
			checksumv 0 3 3982542329 null  getNumChars 497 numChars 497 getNumTaxa 18 numTaxa 18   short false   bits 1048575   states 1048575   sumSquaresStatesOnly 8.2624631639506E13 sumSquares 8.2624631639506E13 longCompressibleToShort false usingShortMatrix false   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState true false 100;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 8 8;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		endTell;
end;