#NEXUS

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=23;
	TAXLABELS
		Fusarium_oxysporum_f.sp._pisi_F40 Fusarium_oxysporum_f.sp._pisi_F28 Fusarium_oxysporum_f.sp._pisi_F184 Fusarium_oxysporum_f.sp._pisi_F202 Fusarium_oxysporum_f.sp._pisi_F105 Fusarium_oxysporum_f.sp._pisi_T247 Fusarium_oxysporum_f.sp._pisi_db Fusarium_oxysporum_f.sp._glycines Fusarium_oxysporum_f.sp._phaseoli Fusarium_oxysporum_f.sp._lini Fusarium_oxysporum_f.sp._dianthi Neocosmospora_boninensis Neocosmospora_vasinfecta_ATCC Neocosmospora_vasinfecta_22425 Neocosmospora_vasinfecta_22527 Neocosmospora_tenuicristata_22155 Nectria_haematococca_db Nectria_haematococca_9617 Nectria_haematococca_6222 Nectria_haematococca_196107 Nectria_haematococca_5551 Nectria_haematococca_156306 Nectria_haematococca_24111 
	;
END;

BEGIN CHARACTERS;
	TITLE  Fusarium_ef1a;
	DIMENSIONS  NCHAR=328;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Fusarium_oxysporum_f.sp._pisi_F40   TCATCGAGAAGTTCGAGAAGGTTAGTCACTTTCCCTTCGATCGCGCGTCCTTTGCCCAT----------------CGATTTCCC----CTACGACTCGAAGCGTGCCCGCTACCCCGCTCGAGA---CCAAGAATCTTGCAATATGACCGTAATTTTTTT--GGTGGGGCACTTACCCCGCCACTT--GAGCGACG------GGAGCGTTTGCCCTCTTAACCATTCTCAC---AACCTCAATGAGTGCGTCGTCACGTG---TCAAGCAGTCACTAACC-ATTCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Fusarium_oxysporum_f.sp._pisi_F28   TCATCGAGAAGTTCGAGAAGGTTAGTCACTTTCCCTTCAATCGCGCGTCCTTTGCCCAT----------------CGATTTCCC----CTACGACTCGAAACGTGCCCGCTACCCCGCTCGAGA---CCAAAAATTTTGCAATATGACCGTAATTTTTTT--GGTGGGGCACTTACCCCGCCACTT--GAGCGAAG------GGAGCGTTTGCCCTCTTA-CCATTCTCAC---AACCTCAATGAGTGCGTCGTCACGTG---TGAAGCAGTCACTAACC-ATTCAATAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Fusarium_oxysporum_f.sp._pisi_F184  TCATCGAGAAGTTCGAGAAGGTTAGTCACTTTCCCTTCAATCGCGCGTCCTTTGCCCAT----------------CGATTTCCC----CTACGACTCGAAACGTGCCCGCTACCCCGCTCGAGA---CCAAAAATTTTGCAATATGACCGTAATTTTTTT--GGTGGGGCACTTACCCCGCCACTT--GAGCGAAG------GGAGCGTTTGCCCTCTTA-CCATTCTCAC---AACCTCAATGAGTGCGTCGTCACGTG---TGAAGCAGTCACTAACC-ATTCAATAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Fusarium_oxysporum_f.sp._pisi_F202  TCATCGAGAAGTTCGAGAAGGTTAGTCACTTTCCCTTCAATCGCGCGTCCTTTGCCCAT----------------CGATTTCCC----CTACGACTCGAAACGTGCCCGCTACCCCGCTCGAGA---CCAAAAATTTTGCAATATGACCGTAATTTTTTT--GGTGGGGCACTTACCCCGCCACTT--GAGCGAAG------GGAGCGTTTGCCCTCTTA-CCATTCTCAC---AACCTCAATGAGTGCGTCGTCACGTG---TGAAGCAGTCACTAACC-ATTCAATAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Fusarium_oxysporum_f.sp._pisi_F105  TCATCGAGAAGTTCGAGAAGGTTAGTCACTTTCCCTTCAATCGCGCGTCCTTTGCCCAT----------------CGATTTCCC----CTACGACTCGAAACGTGCCCGCTACCCCGCTCGAGA---CCAAAAATTTTGCAATATGACCGTAATTTTTTT--GGTGGGGCACTTACCCCGCCACTT--GAGCGAAG------GGAGCGTTTGCCCTCTTA-CCATTCTCAC---AACCTCAATGAGTGCGTCGTCACGTG---TGAAGCAGTCACTAACC-ATTCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Fusarium_oxysporum_f.sp._pisi_T247  CCATCGAGAAGTTCGAGAAGGTTAGTCACTTTCCCTTCAATCGCGCGTCCTTTGCCCAT----------------CGATTTCCC----CTACGACTCGAAACGTGCCCGCTACCCCGCTCGAGA---CCAAAAATTTTGCAATATGACCGTAATTTTTTT--GGTGGGGCACTTACCCCGCCACTT--GAGCGAAG------GGAGCGTTTGCCCTCTTA-CCATTCTCAC---AACCTCAATGAGTGCGTCGTCACGTG---TGAAGCAGTCACTAACC-ATTCAATAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Fusarium_oxysporum_f.sp._pisi_db    CCATCGAGAAGTTCGAGAAGGTTAGTCACTTTCCCTTCGATCGCGCGTCCTTTGCCCAT----------------CGATTTCAC----CTACGACTCGAAACGTGCCCGCTACCCCGCTCGAGA---CCAAAAATTTTGCAATATGACCGTAATTTTTTTTTGGTGGGGCACTTACCCCGCCACTT--GAGCGACG------GGAGCGTTTGCCCTCTTAACCATTCTCAC---AACCTCAATCAGTGCGTCGTCACGTG---TCAAGCAGTCACTAACC-ATTCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Fusarium_oxysporum_f.sp._glycines   CCATCGAGAAGTTCGAGAAGGTTAGTCACTTTCCCTTCAATCGCGCGTCCTTTGCCCAT----------------CGATTTCCC----CTACGACTCGAAACGTGCCCGCTACCCCGCTCGAGA---CCAAAAATTTTGCAATATGACCGTAATTTTTTT--GGTGGGGCACTTACCCCGCCACTT--GAGCGACG------GGAGCGTTTGCCCTCTTA-CCATTCTCAC---AACCTCAATGAGTGCGTCGTCACGTG---TCAAGCAGTCACTAACC-ATTCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Fusarium_oxysporum_f.sp._phaseoli   TCATCGAGAAGTTCGAGAAGGTTAGTCACTTTCCCTTCGATCGCGCGTCCTTTGCCCAT----------------CGACTTCCC----CTACGACTCGAAACGTGCCCGCTACCCCGCTCGAGA---CCAAAAATTTTGCAATATGACCGTAATTTTTTT--GGTGGGGCATTTACTCCGCCACTT--GAGCGAAG------GGCGCGTTTGCCCTCTTA-CCATT---AC---AACCTCAATGAGTGCGTCGTCACGTG---TCAAGCAGTCACTAACC-ATTCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Fusarium_oxysporum_f.sp._lini       CCATCGAGAAGTTCGAGAAGGTTAGTCACTTTCCCTTCAATCGCGCGTCCTTTGCCCAT----------------CGATTTCCC----CTACGACTCGAAACGTGCCCGCTACCCCGCTCGAGA---CCAAAAATTTTGCAATATGACCGTAATTTTTTT--GGTGGGGCACTTACCCCGCCACTT--GAGCGAAG------GGAGCGTTTGCCCTCTTA-CCATTCTCAC---AACCTCAATGAGTGCGTCGTCACGTG---TGAAGCAGTCACTAACC-ATTCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Fusarium_oxysporum_f.sp._dianthi    CCATCGAGAAGTTCGAGAAGGTTAGTCACTTTCCCTTCAATCGCGCGTCCTTTGCCCAT----------------CGATTTCCC----CTACGACTCGAAACGTGCCCGCTACCCCGCTCGAGA---CCAAAAATTTTGCAATATGACCGTAATTTTTTT--GGTGGGGCACTTACCCCGCCACTT--GAGCGAAG------GGAGCGTTTGCCCTCTTA-CCATTCTCAC---AACCTCAATGAGTGCGTCGTCACGTG---TGAAGCAGTCACTAACC-ATTCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Neocosmospora_boninensis            CCATCGAGAAGTTCGAGAAGGTTGGTGACATCTCCCCCGATCGCGCCTTGCTATTCCAC--ATCGAATTCCGCGTCGAATTCCCTCCCTCGCGATACGCTCTGCGCCCGCTTCTTC---CGAGT--ACCAAAATTTTTGCGGTCCGACCGTAATTTTTTT--GGTGGGGCATCTACCCCGCCACTC--GGGCGACGTTGGACAAAGCCCTGATCCCTGCACACAAAAACACCAAACCCTCTTGGCGCGCATCATCACGTGGTTCACAACAGACGCTAACCCATCCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Neocosmospora_vasinfecta_ATCC       TCATCGAGAAGTTCGAGAAGGTTGGTGACATCTCCCCCGATCGCGCCTTGTTATTCCAC--ATCGAATTCCGCGTCGAATTCCCTCCCTCGCGATACGCTCTGCGCCCGCTTCTTC---CGAGT--CCCAAAATTTTTGCGGTCCGACCGTAATTTTTTT--GGTGGGGCATCTACCCCGCCACTC--GGGCGACGTTGGACAAAGCCCTGATCCCTGCACACAAAAACACCAAACCCTCTTGGCGCGCATCATCACGTGGTTCACAACAGACGCTAACCGATCCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Neocosmospora_vasinfecta_22425      TCATCGAGAAGTTCGAGAAGGTTGGTGACATCTCCCCCGATCGCGCCTTGCTATTCCAC--ATCGAATTCCGCGTCGAATTCCCTCCCTCGCGATACGCTCTGCGCCCGCTTCTTC---CGAGT--TCCAAAATTTTTGCGGTCCGACCGTAATTTTTTT--GGTGGGGCATCTACCCCGCCACTC--GGGCGACGTTGGACAAAGCCCTGATCCCTGCACACAAAAACACCAAACCCTCTTG-CGCGCATCATCACGTGGTTCACAACAGACGCTAACCGATCCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Neocosmospora_vasinfecta_22527      TCATCGAGAAGTTCGAGAAGGTTGGTGACATCTCCCCCGATCGCGCCTTGCTATTCCAC--ATCGAATTCCGCGTCGAATTCCCTCCCTCGCGATACGCTCTGCGCCCGCTTCTTC---CGAGT--CCCAAAATTTTTGCGGTCCGACCGTAATTTTTTT--GGTGGGGCATCTACCCCGCCACTC--GGGCGACGTTGGACAAAGCCCTGATCCCTGCACACAAAAACACCAAACCCTCTTGGCGCGCATCATCACGTGGTTCACAACAGACGCTAACCGATCCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Neocosmospora_tenuicristata_22155   TCATCGAGAAGTTCGAGAAGGTTGGTGACATCTCCCCCGATCGCGCCTTGCTATTCCAC--ATCGAATTCCGCGTCGAATTCCCTCCCTCGCGATACGCTCTGCGCCCGCTTCTTC---CGAGT--ACCAAAATTTTTGCGGTCCGACCGTAATTTTTTT--GGTGGGGCATCTACCCCGCCACTC--GGGCGACGTTGGACAAAGCCCTGATCCCTGCACACAAAAACACCAAACCCTCTTGGCGCGCATCATCACGTGGTTCACAACAGACGCTAACCCATCCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Nectria_haematococca_db             CCATCGAGAAGTTCGAGAAGGTTGGTCACATCTCCCCCGATCGCGCCTTGCTATCCCAC--ATCGAATTCCCCGTCGAATTCCCTCCTCCGCGACACGCTCTGCGCCCGCTTCTCC---CGAG--TCCCAAAAATTTTGCGGTTCGACCGTAAATTTTTTTTGGTGGGGCATTTACCCCGCCACTC--GGGCGACGTTGGACAAAGCCCTGATCCCTGCACACAAAAACACCAAACCCTCTTGGCGC--G-CATCACGTGGTTCACAACAGACACTGACTGGTTCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Nectria_haematococca_9617           TCATCGAGAAGTTCGAGAAGGTTGGTCACATCTCCCCCGATCGCGCCTTGCTATCCCACC-ATCGAATTCCCCGTCGAATTCCCTCCTCCGCGACACGCTCTGCGCCCGCTTCTCC---CGAGC-TCCCAAAAATTTTGCGGTTCGACCGTAAATTTTTTTTGGTGGGGCATTTACCCCGCCACTCC-GGGCGACGTTGGACAAAGCCCTGATCCCTGCACACAAAAACACCAAACCCTCTTGGCGCC-G-CATCACGTGGTTCACAACAGACACTGACTGGTTCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Nectria_haematococca_6222           TCATCGAGAAGTTCGAGAAGGTTGGTCACATCTCCCCCGATCGCGCCTTGCTATCCCAGGCATCGAATTCCCCGTCGAATTCCCTCCTCCGCGACACGCTCTGCGCCCGCTTCTCC---CGAGGGTCCCAAAAATTTTGCGGTTCGACCGTAAATTTTTTTTGGTGGGGCATTTACCCCGCCACTGGCGGGCGACGTTGGACAAAGCCCTGATCCCTGCACACAAAAACACCAAACCCTCTTGGCGCGGG-CATCACGTGGTTCACAACAGACACTGACTGGTTCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Nectria_haematococca_196107         TCATCGAGAAGTTCGAGAAGGTTGGTCACATCTCCCCCGATCGCGCCTTGCTATCCCACACATCGAATTCCCCGTCGAATTCCCTCCTCCGCGACACGCTCTGCGCCCGCTTCTCC---CGAGCATCCCAAAAATTTTGCGGTTCGACCGTAATTTTTTTT-GGTGGGGCATTTACCCCGCCACTCACGGGCGACGTTGGACAAAGCCCTGATCCCTGCACACAAAAACACCAAACCCTCTTGGCGCCAG-CATCACGTGGTTCACAACAGACACTGACTGGTTCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Nectria_haematococca_5551           TCATCGAGAAGTTCGAGAAGGTTGGTCACATCTCCCCCGATCGCGCCTTGCTATCCCACC-ATCGAATTCCCCGTCGAATTCCCTCCTCCGCGACACGCTCTGCGCCCGCTTCTCC---CGAGC-TCCCAAAAATTTTGCGGTTCGACCGTAAATTTTTTT-GGTGGGGCATTTACCCCGCCACTCC-GGGCGACGTTGGACAAAGCCCTGATCCCTGCACACAAAAACACCAAACCCTCTTGGCGCC-G-CATCACGTGGTTCACAACAGACACTGACTGGTTCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Nectria_haematococca_156306         TCATCGAGAAGTTCGAGAAGGTTGGTCACATCTCCCCCGATCGCGCCTTGCTATCCCATACATCGAATTCCCCGTCGAATTCCCTCCTCCGCGACACGCTCTGCGCCCGCTTCTCC---CGAGTATCCCAAAAATTTTGCGGTTCGACCGTAATTTTTTTT-GGTGGGGCATTTACCCCGCCACTTACGGGCGACGTTGGACAAAGCCCTGATCCCTGCACACAAAAACACCAAACCCTCTTGGCGCTAG-CATCACGTGGTTCACAACAGACACTGACTGGTTCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
	Nectria_haematococca_24111          --------------------------------------------------CTATCCCACCCATCGAATTCCCCGTCGAATTCCCTCCTCCGCGACACGCTCTGCGCCCGCTTCTCC---CGAGCCTCCCAAAAATTTTGCGGTTCGACCGCAATTTTTTTTTGGTGGGGCATTTACCCCGCCACTCCCGGGCGACGTTGGACAAAGCCCTGATCCCTGCACACAAAAACACCAAACCCTCTTGGCGCCCG-CATCACGTGGTTCACAACAGACACTGACTGGTTCAACAATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA
;
END;


BEGIN TREES;
	Title ef1a_consensus;
	LINK Taxa = Taxa;
	TRANSLATE
		1 Fusarium_oxysporum_f.sp._pisi_F40,
		2 Fusarium_oxysporum_f.sp._pisi_F28,
		3 Fusarium_oxysporum_f.sp._pisi_F184,
		4 Fusarium_oxysporum_f.sp._pisi_F202,
		5 Fusarium_oxysporum_f.sp._pisi_F105,
		6 Fusarium_oxysporum_f.sp._pisi_T247,
		7 Fusarium_oxysporum_f.sp._pisi_db,
		8 Fusarium_oxysporum_f.sp._glycines,
		9 Fusarium_oxysporum_f.sp._phaseoli,
		10 Fusarium_oxysporum_f.sp._lini,
		11 Fusarium_oxysporum_f.sp._dianthi,
		12 Neocosmospora_boninensis,
		13 Neocosmospora_vasinfecta_ATCC,
		14 Neocosmospora_vasinfecta_22425,
		15 Neocosmospora_vasinfecta_22527,
		16 Neocosmospora_tenuicristata_22155,
		17 Nectria_haematococca_db,
		18 Nectria_haematococca_9617,
		19 Nectria_haematococca_6222,
		20 Nectria_haematococca_196107,
		21 Nectria_haematococca_5551,
		22 Nectria_haematococca_156306,
		23 Nectria_haematococca_24111;
	TREE PAUP_1 = ((9:0.02397,(1:0.013868,(7:0.008761,(8:0.0,(2:0.0,3:0.0,4:0.0,5:0.004189,6:0.004189,10:0.008474,11:0.008474):0.017649):0.004345):0.003142):0.0):0.775858,((13:0.003762,14:0.003795,15:0.0,(12:0.003776,16:0.0):0.007747):0.097724,(17:0.004012,18:0.0,19:0.032067,20:0.011622,21:0.0,22:0.027368,23:0.017011):0.0):0.775858)[% ] [% ] [%  setBetweenBits = selected ];

END;