NEXUS
[File created by TreeBASE:  7/26/07  21:06:19]
[Matrix accession#: M2032]

BEGIN TAXA;
	TITLE M2032;
	DIMENSIONS  NTAX=12;
	TAXLABELS
		F1_Progeny_Isolates_67_and_80	Isolate_67_mata	Isolate_80_matb	Phaeoacremonium_aleophilum_AF017651	Phaeoacremonium_aleophilum_AF266647	Phaeoacremonium_angustius_CBS24995	Phaeoacremonium_angustius_AF197974	Phaeoacremonium_inflatipes	Phaeoacremonium_mortoniae	Phaeoacremonium_viticola	Phialophora_richardsiae	Togninia_minima
	;
END;

BEGIN CHARACTERS;
	TITLE M2032;
	DIMENSIONS NCHAR=516;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		F1_Progeny_Isolates_67_and_80             CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGT-CGGGGGCCAACCCCG--CCCGCCGCCG---GACTCCCCCTCGCGGGGCTGCGCCGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTACCCAGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA
		Isolate_67_mata                           CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGT-CGGGGGCCAACCCCG--CCCGCCGCCG---GACTCCCCCTCGCGGGGCTGCGCCGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTACCCAGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA
		Isolate_80_matb                           CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGT-CGGGGGCCAACCCCG--CCCGCCGCCG---GACTCCCCCTCGCGGGGCTGCGCCGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTACCCAGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA
		Phaeoacremonium_aleophilum_AF017651       CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGT-CGGGGGCCAACCCCG--CCCGCCGCCG---GACTCTCCCTCGCGGGGCTGCGCCGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-AGCGGGC-GCGG-CCCCGAAAGTCAGTGGCGGGCTCGC-AGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTACCCAGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA
		Phaeoacremonium_aleophilum_AF266647       CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGT-CGGGGGCCAACCCCG--CCCGCCGCCG---GACTCCCCCTCGCGGGGCTGCGCCGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTACCCAGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA
		Phaeoacremonium_angustius_CBS24995        CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGT-CGGGGGCCAACCCCG--CCCGCCGCCG---GACTCCCCCTCGCGGGGCTGCGCCGGCGGGCCTGCCGGAGGGCAC--AGACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTACCCAGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA
		Phaeoacremonium_angustius_AF197974        CC-AAACCCTTTGTGAACATACCTGTTTCCGTTGCTTCGGCAGGT-CGGGGGTCACCCCCCG-CCCGCCGCCG----GGCCCCCCTCGC-GGGGTCGCCCGGCGGGCCTGCCGGAGGGCACA-AGACTCTGTATTTCAAAAC-TACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGT-CCCCT-CGCGGGC-GCGGGCCCCCAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTTCCCGGCCGTAAAACACCCCAAACTTTACAAGGTTGACCTCGGA
		Phaeoacremonium_inflatipes                CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGTTCAGGCGCTGCT-CCGGGCCTACCGCCGCGCGGGCCCGCTCTGCCGGGGTCGCCGGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTACAA--CGTACTTCTCTGAGTTATCTTTTACAAACAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGCACCCCT-AGCGGGCCGCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAATATTC-CCTCGCTGCGGAGGACCTGGTGGGTTACCCAGCCGTAAAACACCCCAAA-TTCTAAAGGTTGACCTCGGA
		Phaeoacremonium_mortoniae                 TC-AAACCCTTTGTGAACATACCTGTTT-CGTTGCTTCGGCAGGCCCGGGGGTCACTCCCCGGCCCGCCGCCG----GCACCCCCTCGCCGGGG-CGCATGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAACAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGT-CCCCC-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTTCCCGGCCGTAAAACACCCCAAATTTTACAAGGTTGACCTCGGA
		Phaeoacremonium_viticola                  CC-AAACCCTTTGTGAACATACCTGTTTCCGTTGCTTCGGCAGGT-CGGGGGTCACCCCCCG-CCCGCCGCCG----GGCCCCCCTCGC-GGGGTCGCCCGGCGGGCCTGCCGGAGGGCACA-AGACTCTGTATTTCAAAAC-TACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGT-CCCCT-CGCGGGC-GCGG-CCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTAC-CCTCGCTGCGGAGGACCTGGCGGGTTT-CCGGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA
		Phialophora_richardsiae                   CCCAAAACCCACCCGTACCTACCTACA--CGTTGCTTCGGCGG-------------TGCCG--CCG--CGGGG---GGTGCCCAGCTGCTGGGCCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCTCGCGTACCA-TCTGAGCGAA--TG-GCGAATAA-TAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCCCTG----CCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGCA-ACAC-TCGCTCAGGGCGTCCCGGCGCGCG--TCGGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA
		Togninia_minima                           CC-AAACCCTTTGTGAACATACCTGTTTTCGTTGCTTCGGCAGGT-CGGGGGCCAACCCCG--CCCGCCGCCG---GACTCCCCCTCGCGGGGCTGCGCCGGCGGGCCTGCCGGAGGGCACA--GACTCTGTATTCAAAAACGTACCTCTCTGAGTTATCTTT-ACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTTTACACCTCGCTGCGGAGGACCTGGCGGGTTACCCAGCCGTAAAACACCCCAAACTTCT-AAGGTTGACCTCGGA
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 516 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;