#NEXUS
[written Sun Aug 23 21:55:20 BRT 2015 by Mesquite  version 3.04 (build 725) at fernando-HP-Pavilion-15-Notebook-PC/127.0.1.1]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=18;
	TAXLABELS
		'Caldanaerobacter subterraneus pacificus_CDSM653_01588' 'Caldanaerobacter subterraneus tengcongensis_NP_623303.1' 'Caldanaerobacter subterraneus yonseiensis_ERM92235.1' Candidatus_Magnetoglobus_multicellularis_str._Araruama_ETR68217.1 Desulfobacterium_sp._CBX30160.1 'Desulfotignum phosphitoxidans WP_006964992.1' 'Desulfotomaculum acetoxidans YP_003191764.1' 'Desulfotomaculum kuznetsovii YP_004518099.1' 'Desulfurispora thermophila WP_018086202.1' 'Escherichia coli WP_001299064.1' Geobacillus_thermoglucosidasius_AEH47840.1 Geobacillus_thermoglucosidasius_EID44396.1 'Geobacillus YP_003989189.1' 'Escherichia coli WP_001079181.1' 'Methanosaeta harundinacea YP_005920612.1' 'Thermoanaerobacter sp. YS13 THYS13_RS04695' 'Thermococcus onnurineus TON_1017' 'Thermodesulfobacterium thermophilum WP_022856205.1' 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=270;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	'Caldanaerobacter subterraneus pacificus_CDSM653_01588'            MRGEGEKMPRETLIKQEVEGVKRREIFVRYDRCVGCRSCELACAVSHTASRDLFEAILRGEKSKKRIYVDQIDQ--IKAPAVCRHCEEAPCVAVCVTGAMQRREDGV--NIVDLSRCIGCWMCALVCPFGAVSRG----------------------------------------EGKAIKCDRECVD---EQGIPACVRACHTGALVFKTVEEFE---ADRRREVVTSLK---------------------------------------
	'Caldanaerobacter subterraneus tengcongensis_NP_623303.1'          --------------------MIRREIFVRYDRCVGCHSCELACAISHTAARDLFGAILGGEKAQKLLWVDQVGP--VKAPAVCRHCEDAPCVAVCPTGAMHRREDGL--NLVNLPQCIGCWMCALACPFGAVSRG----------------------------------------DGKAIKCDRECLD---EEGVPACVRACPTGALVFKTVEEFE---ADRRREVVTSLK---------------------------------------
	'Caldanaerobacter subterraneus yonseiensis_ERM92235.1'             --------------------MMRREIFVRYERCVGCHSCELACAVSHTAARDLFVAIFRGDRSQKRLWVDQIDR--IKAPAVCRQCEDAPCVSVCPTGAMHQREDTI--NVCNLQQCIGCWMCALACPFGAIGRNEL--------------------------------------EGKVIKCDRECLN---EEGVPACVAACPTGALVYQTVEEFE---AERRKEAITSLK---------------------------------------
	Candidatus_Magnetoglobus_multicellularis_str._Araruama_ETR68217.1  -------------------MQHQKEIFVKIDRCVGCRSCEMACAVAHSESKTLFNAIFEKPMPKSRVYVEWVPP-DKKVPMVCRNCDEAPCMFACISGAITRNEDGI--LITDMDKCIGCWTCVMVCPYGVIGRHLE--------------------------------------THKAYRCDR-CPD---KN-IPACVEACPTMAMVYDTVESYS---KSVRKNASKELTR--------------------------------------
	Desulfobacterium_sp._CBX30160.1                                    -------------------MTTPKEIFVKIDKCMGCHSCELACALEHSKSKLLYNAISEHPEPKKRIYVEWMSQ-NRRMPVLCRHCEDAPCMHACISGAIIRTQDGV--VLTDKDKCIGCWTCVMVCPYGVIGRHME--------------------------------------EHKAYRCDR-CPD---RD-VPACVSACPTHALVYETVENFS---SNTRKAVSEELAAGHGG----------------------------------
	'Desulfotignum phosphitoxidans WP_006964992.1'                     -------------------MTLPKEIFVKSDRCVGCNSCIMACAVEHSQSKTLFGAIGESQTPKSRIYVEWAAP-NKKIPLVCRQCEDAPCMYACISGAITRNADGV--VITDTDKCIGCWTCVMVCPYGVIGRHLE--------------------------------------AGKAYRCDR-CPD---RD-VPACVSACPTGALVFQTVPAYS---KSVRKKASQELAKVKGE----------------------------------
	'Desulfotomaculum acetoxidans YP_003191764.1'                      ----------------------MKEIMVNIERCLSCHSCELACAVAHSSGKTLFSAVSETPKPLKRIFVHSSGT--KNVPVSCRHCEEAPCIDACIAGAMHRTADGTVTNEGGSGVCTGCWMCVMVCPYGVIRSRQT--------------------------------------ARVAVKCDRNCLN---REGVPACVQACPTGALQFIEVDEFS---IQKRKNFVAVF----------------------------------------
	'Desulfotomaculum kuznetsovii YP_004518099.1'                      ---------------------MPKEVLIRYDRCLGCRSCQLACAVAHSSAGSLFGAVLGGEKPRTRIFVHQVGG--HKAPLNCRHCQDAPCVDACIAGAMHRQEDGTVTNVGGDQQCTACWMCVMVCPYGVIRSDAE--------------------------------------GTMALKCDRECRE---ETGIPACVRACPTGALVYDEVDDYS---GRRRLDVLHRALSNV------------------------------------
	'Desulfurispora thermophila WP_018086202.1'                        ---------------------MNKEILIRYDRCTGCRSCELACAVAHSASKTLFGALSEKKPPRKRIFVHQVGS--KKVPLNCRHCAEAPCIDACIAGAMHRTAEGVVTNEDGEQPCTGCWMCVMVCPYGVIRSELA--------------------------------------EKIALKCDRNCLD---GSGTPACVRACPTGALVYGAVDSFA---ADRRQEFLSKALL--------------------------------------
	'Escherichia coli WP_001299064.1'                                  ---------------------MNRFVVAEPLWCTGCNTCLAACSDVHKT---------QGLQQHPRLALAKTST--LTAPVVCHHCEEAPCLQVCPVNAISQRDDAI---QLNESLCIGCKLCAVVCPFGAISASGSRPVNAPAQYVFQAEGSLKDGEENVPPQ-HALLRWEPGVQTVAVKCDL-CDF---LPEGPACVRACPNQALRLITDDSLQRQMKEKQRLAASWFANGGEDPLSLTQEQR-------------------------
	Geobacillus_thermoglucosidasius_AEH47840.1                         --------------------MSRKEIFIRYERCTGCHSCELACAVAHTSDGDLVGAILRGERPQKYLWVEDIDE--KKVPTVCRQCEDAPCVAVCPTGAMFKLDENT--NVCNLQQCIGCWMCALSCPFGAIGRN----------------------------------------EGKVVKCDRACLN---EEGIPACVRSCPTGALVFMTVEEFE---AERRKEAVASLLK--------------------------------------
	Geobacillus_thermoglucosidasius_EID44396.1                         --------------------MSRKEIFIRYERCTGCHSCELACAVAHTSDGDLVGAILRGERPQKYLWVEDIDE--KKVPTVCRQCEDAPCVAVCPTGAMFKLDENT--NVCNLQQCIGCWMCALSCPFGAIGRN----------------------------------------EGKVVKCDRACLN---EEGIPACVRSCPTGALVFMTVEEFE---AERRKEAVASLLK--------------------------------------
	'Geobacillus YP_003989189.1'                                       --------------------MSRKEIFIRYERCTGCHSCELACAVAHTSDGDLVGAILRGERPQKYLWVEDIDE--KKVPTVCRQCEDAPCVAVCPTGAMFKLDENT--NVCNLQQCIGCWMCALSCPFGAIGRN----------------------------------------EGKVVKCDRACLN---EEGIPACVRSCPTGALVFMTVEEFE---AERRKEAVASLLK--------------------------------------
	'Escherichia coli WP_001079181.1'                                  ---------------------MNRFVIADSTLCIGCHTCEAACSETHRQ---------HGLQSMPRLRVMLNEK--ESAPQLCHHCEDAPCAVVCPVNAITRVDGAV---QLNESLCVSCKLCGIACPFGAIEFSGSRPLDIPA----NANTPKAPPAPPAPARISTLLDWVPGIRAIAVKCDL-CSF---DEQGPACVRMCPTKALHLVDNTDIARV-SKRKRELTFNTDFGDLTLFQQAQSGEAK-----------------------
	'Methanosaeta harundinacea YP_005920612.1'                         ----------------------MKEILIRPERCMGCRSCEIACAVEHSQAKSLLSAVAERPAPRKRVYVEFVPDYSISVPMACRHCEEAPCVSVCPTGAL-RQDEVTRVVTHNPEGCIGCWTCASVCSYGMIGRNRE--------------------------------------ERVAIKCDR-CPD---LE-VPACVSACPTGALVFKELEEFS---ESKRAESALKLARGMAAGSGR------------------------------
	'Thermoanaerobacter sp. YS13 THYS13_RS04695'                       -----------------VEGVKRREIFVRYDRCVGCRSCELACAVSHTASRDLFEAILRGEKSKKRIYVDQIDQ--IKAPAVCRHCEEAPCVAVCVTGAMQRREDGV--NIVDLFRCIGCWMCALVCPFGAVSRG----------------------------------------EGKAIKCDRECVD---EQGIPACVRACHTGALVFKTVEEFE---ADRRREVVTSLK---------------------------------------
	'Thermococcus onnurineus TON_1017'                                 ------------MPAFSGSNMEKLTIYINPERCTGCRACEIACAVEHSMSKNLFGAIFEKPTPKPRLQVVVADF--FNVPMRCQHCEDAPCMEACPTGAISRTKEGF--VVLNANKCIGCLMCVMACPFGHPKFEPE--------------------------------------YKAVIKCDS-CVDRVREGKEPACVEACPTRALKFGTLGEIL---EEVRKEKAESLISGLKSQGMVYMKPVSESKKKEDLVRPMDLYLAYSNVVWY
	'Thermodesulfobacterium thermophilum WP_022856205.1'               --------------------MIRREIFVRYDRCVGCHSCELACAISHTAARDLFGAILGGEKAQKLLWVDQVGP--VKAPAVCRHCEDAPCVAVCPTGAMHRREDGL--NLVNLPQCIGCWMCALACPFGAVSRG----------------------------------------DGKAIKCDRECLD---EEGVPACVRACPTGALVFKTVEEFE---ADRRREGVTSLK---------------------------------------

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  270;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  18;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  270;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  270;
END;

BEGIN TREES;
	Title 'Trees from "cooF.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		n0 'Caldanaerobacter subterraneus pacificus_CDSM653_01588',
[1] 		n1 'Caldanaerobacter subterraneus tengcongensis_NP_623303.1',
[2] 		n2 'Caldanaerobacter subterraneus yonseiensis_ERM92235.1',
[3] 		n3 Candidatus_Magnetoglobus_multicellularis_str._Araruama_ETR68217.1,
[4] 		n4 Desulfobacterium_sp._CBX30160.1,
[5] 		n5 'Desulfotignum phosphitoxidans WP_006964992.1',
[6] 		n6 'Desulfotomaculum acetoxidans YP_003191764.1',
[7] 		n7 'Desulfotomaculum kuznetsovii YP_004518099.1',
[8] 		n8 'Desulfurispora thermophila WP_018086202.1',
[9] 		n9 'Escherichia coli WP_001299064.1',
[10] 		n10 Geobacillus_thermoglucosidasius_AEH47840.1,
[11] 		n11 Geobacillus_thermoglucosidasius_EID44396.1,
[12] 		n12 'Geobacillus YP_003989189.1',
[13] 		n13 'Escherichia coli WP_001079181.1',
[14] 		n14 'Methanosaeta harundinacea YP_005920612.1',
[15] 		n15 'Thermoanaerobacter sp. YS13 THYS13_RS04695',
[16] 		n16 'Thermococcus onnurineus TON_1017',
[17] 		n17 'Thermodesulfobacterium thermophilum WP_022856205.1';
	TREE tree_1 = ((((((n12:0.000001,n11:0.000001)0.000000:0.000001,n10:0.000001)1.000000:0.198642,n2:0.049192)0.395000:0.08121,((((n8:0.161064,n7:0.3281)0.677000:0.128236,n6:0.350796)0.980000:0.30081,((n5:0.136501,n3:0.176286)0.897000:0.113977,n4:0.157059)0.976000:0.303302)0.000000:0.075159,(n16:0.823131,n14:0.354904)0.148000:0.1025)0.996000:0.384228)0.704000:0.039606,((n1:0.000001,n17:0.007306)0.975000:0.087108,(n0:0.000001,n15:0.006774)0.990000:0.109944)0.584000:0.016165)1.000000:1.145906,n13:0.432189,n9:0.452382)root;

END;


Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1440377720747;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
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				attachments ;
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		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
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				tell It;
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				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord;
		tell It;
			makeTreeWindow #8171692009835851506  #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker;
			tell It;
				suppressEPCResponse;
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				tell It;
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					toggleUseWeights off;
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				setAssignedID 2446.1440377283520.1066212074184047278;
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					tell It;
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						tell It;
							branchLengthsToggle off;
							toggleScale on;
							toggleBroadScale off;
							toggleCenter on;
							toggleEven on;
							setFixedTaxonDistance 0;
						endTell;
						setEdgeWidth 4;
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						orientUp;
					endTell;
					setBackground White;
					setBranchColor Black;
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					setNumBrLenDecimals 6;
					desuppress;
					getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames;
					tell It;
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						toggleShadePartition off;
						toggleShowFootnotes on;
						toggleNodeLabels on;
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						namesAngle ?;
					endTell;
				endTell;
					setTreeNumber 1;
					setTree '((((((13:0.000001,12:0.000001)0.000000:0.000001,11:0.000001)1.000000:0.198642,3:0.049192)0.395000:0.08121,((((9:0.161064,8:0.3281)0.677000:0.128236,7:0.350796)0.980000:0.30081,((6:0.136501,4:0.176286)0.897000:0.113977,5:0.157059)0.976000:0.303302)0.000000:0.075159,(17:0.823131,15:0.354904)0.148000:0.1025)0.996000:0.384228)0.704000:0.039606,((2:0.000001,18:0.007306)0.975000:0.087108,(1:0.000001,16:0.006774)0.990000:0.109944)0.584000:0.016165)1.000000:1.145906,14:0.432189,10:0.452382)root;';
					setDrawingSizeMode 0;
					toggleLegendFloat on;
					scale 0;
					toggleTextOnTree off;
					togglePrintName on;
					showWindow;
				endTell;
				desuppressEPCResponse;
				getEmployee #mesquite.trees.ColorBranches.ColorBranches;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.ornamental.BranchNotes.BranchNotes;
				tell It;
					setAlwaysOn off;
				endTell;
				getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition;
				tell It;
					colorByPartition off;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles;
				tell It;
					setOn on;
					setDigits 4;
					writeAsPercentage off;
					toggleCentred off;
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					toggleWhiteEdges on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings;
				tell It;
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					setFontSize 10;
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				endTell;
				getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
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			tell It;
				getWindow;
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					setFontSize 10;
					getToolPalette;
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					endTell;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
					colorCells  #mesquite.charMatrices.ColorByState.ColorByState;
				tell It;
					setStateLimit 9;
					toggleUniformMaximum on;
				endTell;
					colorRowNames  #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor;
					colorColumnNames  #mesquite.charMatrices.CharGroupColor.CharGroupColor;
					colorText  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleShowTaxonNames on;
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					toggleScrollLinkedTables off;
				endTell;
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				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
				tell It;
					autotabOff;
				endTell;
				getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
				tell It;
					gapCosts 8 3 2 2;
					subCosts  5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5;
				endTell;
				getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;