#NEXUS
[written Mon Aug 24 13:50:48 BRT 2015 by Mesquite  version 3.04 (build 725) at fernando-To-be-filled-by-O-E-M/127.0.1.1]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=11;
	TAXLABELS
		Thermococcus_onnurineus_NA 'Escherichia coli YP_006125565.1' 'Escherichia coli YP_006125376.1' 'Thermacetogenium phaeum YP_006921301.1' 'Moorella thermoacetica YP_431017.1' 'Geobacillus sp. Y4.1MC1 YP_003989196.1' 'Geobacillus thermoglucosidasius YP_004587927.1' 'Thermoanaerobacter sp. YS13 THYS13_RS04630' 'Caldanaerobacter subterraneus pacificus_CDSM653_01580' 'Caldanaerobacter subterraneus tengcongensis_NP_623296.1' 'Caldanaerobacter subterraneus yonseiensis_ERM92229.1' 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=199;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	Thermococcus_onnurineus_NA                               RL------------------------------------------------PPQAIRVFTDEARGIRVVHLFIGRCIFCGRCQDVCPVGAIKLTTQFELATSDHDELHQIVELQMARCSECGKSFDTYR---HLIASLEK-------IHPWERKNLLLCPECRAKKTS------EWRV---------WG-----------
	'Escherichia coli YP_006125565.1'                        MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEQNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLKHNG--DSRAENH-RESFETCPECKRQKCL----VPSDRIELTRHMKEAI------------
	'Escherichia coli YP_006125376.1'                        MLKLLKTIMRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACGAC--ACPANALTIQTDDQQNSRTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLYTRATFHLQRCSRCERPFAPQKTVALAAELLAQQQNAPQNREML-RAQASVCPECKQR-----ATLINDDTDVPLVAKEQL------------
	'Thermacetogenium phaeum YP_006921301.1'                 MIKLLRKVLQVGEATEKYPFTPATVSPGMRGKPEYHFQSCISCGACAGACPANAITLESDPDLGTRRWAIFYGRCIFCGRCEEVCPTGAITLSQDFELAAVNRDDLITTAEFRLTKCRACGRFFAPARELTYLLTSLMENGLPLEEAEEK-RRLLRTCPECRRK--ISICNLRKATTGLTGKGVTR-------------
	'Moorella thermoacetica YP_431017.1'                     MLKLLKKALQVGEATVEYPFKPVEVAPGFRGKPEYNFDRCIACGACATACPPNAITMEYDLKQGTKTWNIFYGRCIFCGRCEEVCPTGAIALTTEFELAVASKEDLYYRAEVQLRKCSCCGEYFAPSRELEYVMSTLEQSGLPEGDRQGW-RQLLEKCPQCRRRQAAVSVAEATGSRDRVQGGGQ--------------
	'Geobacillus sp. Y4.1MC1 YP_003989196.1'                 MLKLLKKALQVGEATVKYPFKPLEVAPGFRGKPVYDFSQCIACGACATACPSNAITMEHDFKRGIVSWNINYGRCIFCGRCDEVCPTGAIALSEEFELAASRKEDLYCRAEIQLCKCSSCGKHFAPYRELEYVLANLEQVGLTDHDKEKW-KQLVNVCPECRRRQVA-----APWVHN---------------------
	'Geobacillus thermoglucosidasius YP_004587927.1'         MLKLLKKALQVGEATVKYPFKPLEVAPGFRGKPVYDFSQCIACGACATACPSNAITMEHDFKRGIVSWNINYGRCIFCGRCDEVCPTGAIALSEEFELAASRKEDLYCRAEIQLCKCSSCGKHFAPYRELEYVLANLEQVGLTDHDKEKW-KQLVNVCPECRRRQVA-----APWVHN---------------------
	'Thermoanaerobacter sp. YS13 THYS13_RS04630'             MLRLLKKALQVGEATVEYPFKPVEVAQGFRGKPAYDFSRCIGCGACATACPSNAITMDCDLDRGIKSWNINYGRCIFCGRCEEVCPTGAIVLSTEFELAVIKKEDMYCRAEFQLCRCIFCGEYFETFREIEYVREILEQTGLTKKSLESW-VQLLKVCPKCRRHKVARIAALDNWHVDLNGRREEKWNQKLSYKNLKQS
	'Caldanaerobacter subterraneus pacificus_CDSM653_01580'  MLRLLKKALQVGEATVEYPFKPVEVAQGFRGKPAYDFSRCIGCGACATACPSNAITMDCDLDRGIKSWNINYGRCIFCGRCEEVCPTGAIVLSTEFELAVIKKEDMYCRAEFQLCRCIFCGEYFETFREIEYVREILEQTGLTKKSLESW-VQLLKVCPKCRRHKVARIAALDNWHVDLNGRREEKWNQKLSYKNLKQS
	'Caldanaerobacter subterraneus tengcongensis_NP_623296.1' MLRLLKKALQVGEATVEYPFKPVEVAQGFRGKPAYDFSRCIGCGACATACPSNAITMDCDLDRGIKSWNINYGRCIFCGRCEEVCPTGAIVLSTEFELAVIKKEDMYCRAEFQLCRCIFCGEYFETFREIEYVREILEQTGLTKKSLESW-VQLLKVCPKCRRHKVARIAALDNWHVDLNGRREEKWNQKLSYKNLKQS
	'Caldanaerobacter subterraneus yonseiensis_ERM92229.1'   MLRLLKKALEVGEATVEYPFKPVEVAQGFRGKPAYDFSRCIGCGACATACPSNAITMDCDLDKGIKSWNINYGCCIFCGRCEEVCPTGAIVLSKEFELAVIKKEDMYCRAELKLCRCIFCGEYFETFREIEYVREVLEQTGLTKKSLESW-DQLLKVCPKCRRHKVARIAALDNWHVDLNGRREE---------NGTRS

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  199;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  11;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  199;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  199;
END;

BEGIN TREES;
	Title 'Trees from "hyfH.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 Thermococcus_onnurineus_NA,
[1] 		2 'Escherichia coli YP_006125565.1',
[2] 		3 'Escherichia coli YP_006125376.1',
[3] 		4 'Thermacetogenium phaeum YP_006921301.1',
[4] 		5 'Moorella thermoacetica YP_431017.1',
[5] 		6 'Geobacillus sp. Y4.1MC1 YP_003989196.1',
[6] 		7 'Geobacillus thermoglucosidasius YP_004587927.1',
[7] 		8 'Thermoanaerobacter sp. YS13 THYS13_RS04630',
[8] 		9 'Caldanaerobacter subterraneus pacificus_CDSM653_01580',
[9] 		10 'Caldanaerobacter subterraneus tengcongensis_NP_623296.1',
[10] 		11 'Caldanaerobacter subterraneus yonseiensis_ERM92229.1';
	TREE tree_1 = (((((9:0.000001,8:0.000001)0.000000:0.000001,10:0.000001)0.000000:0.000001,11:0.069992)1.000000:0.310025,(1:1.083969,((4:0.54779,(3:0.55778,2:0.631149)0.872000:0.321304)0.663000:0.099432,5:0.214397)0.692000:0.080076)0.127000:0.042502)0.981000:0.216265,7:0.000001,6:0.000001)root;

END;


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end;