#NEXUS
[written Mon Aug 24 22:57:44 BRT 2015 by Mesquite  version 3.04 (build 725) at fernando-HP-Pavilion-15-Notebook-PC/127.0.1.1]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=9;
	TAXLABELS
		'Caldanaerobacter subterraneus yonseiensis_ERM91255.1' 'Caloramator australicus WP_008908957.1' Thermoanaerobacter_ethanolicus_EGD52036.1 'Thermoanaerobacter indiensis WP_019907163.1' Thermoanaerobacter_siderophilus_EIW00253.1 'Thermoanaerobacter thermohydrosulfuricus WP_004399466.1' 'Thermoanaerobacter wiegelii YP_004818838.1' Thermobrachium_celere_CDF59381.1 'Thermococcus sp. 4557 YP_004762126.1' 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=506;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	'Caldanaerobacter subterraneus yonseiensis_ERM91255.1'   MNS--IVFLVVIPIIAAFLSLFLGKVNKL----IAYIVTIFNLSFSVVVLVSGK-----IPFNVAIGGWRAPYGINFVVTDITIFFLLLINVAAVLSLTTIKEHMEYQ----FYAFYFILLAATNGMVLTGDIFNFYLFTELTTFAIGGLVAYKRDRLATGASLKYLILSSTASTFSLAAIGLIYKTLGTLNFADIASKISNLNKASLSLILILFISSMLVELKIFPFNIWVVKAYDASIPAVNLFLHGMVSTAGVYGAIRILLMVFSKNGIMLSQSSNIANILILLAFITVIISEIGALTEKNLIKVLAFSSMAQLGIFLFGISLGNYEALKGAFYIVISNYFAKFVMFIIAKNYSVIAGSRNYEDMKGLGRKYPGLAIAFTISALSLMGMPFFAGFWGKLSIVGNALLMDKIAIIGVIIILISSVIEGVYYLRISHTFFSDGNIQDTKLSRINCVLPIILAAVILIIGIYPNSIENIIWTMINEIQNTPEKYIQVILPLK----
	'Caloramator australicus WP_008908957.1'                 MNS--IVFLIVIPLIAAFLSLFLGKNDKI----LAYIVTLFNIIFSILILFSGK-----IPFNVAIGGWRAPYGINYAVTDLTIFFLVLVNVAALLALTSVREIMEYQ----FYSFYFVLLSSTNGIVLTGDLFNFFLFIELSTFAVAGLISYKRDRLSTGAALKYLILSSTASIFSLAAIGLIYKTLGTLNFADIANKVNNLNEASLSLILILYISSLLVELKIFPFNMWVVKAYEASKTSVNLFIHGMLGTAGIYGVLRILLMVFSKETGKLTLSGNLSSILMLFAFVTVIIGEIGALTEKNMKKILAFSSMAQLGIVLFGISLGSFDALKGVLYIVISNYLAKFVMFLTVNEFSKVSGSTNYLDMKGLGRRYPVLAISFTISALSLMGIPFFAGFWGKISIIGNAVFSGKLELIGAVLILIASVIEGVYYLRISHTFFSQGHEREGRISRVYCLLPMILALVILFIGINPDSFENIISILLDEI-KSPEKYIKLILSLK----
	Thermoanaerobacter_ethanolicus_EGD52036.1                MNS--IVFLVVIPIIAAFLSLFLGKVNKL----IAYIVTIFNLSFSVVVLVSGK-----IPFNVAIGGWRAPYGINFVVTDITIFFLLLINVAAVLSLTTIKEHMEYQ----FYAFYFILLAATNGMVLTGDIFNFYLFTELTTFAIGGLVAYKRDRLATGASLKYLILSSTASIFSLAAIGLIYKTLGTLNFADIASKISNLNKASLSLILILFISSMLVELKIFPFNLWVVKAYDASIPAVNLFLHGMVSTAGVYGAIRILLMVFSKNGVMSDQSSNIANILILLAFITVMIGEIGALTEKNLIKVLAFSSMAQLGIFLFGISLGNYEALKGAFYIVISNYFAKLIMFIVAKNYSVVAGSRNYNAMKGLGRKYPGLAIAFTISALSLMGMPFFAGFWGKLSIVGNALLMDKIAITGVIIILISSVIEGVYYLRISHTFFSDGNIQDTKLSRINCVLPIILAAVILIIGIYPNSIENIIWTMINEIQNTPEKYIQVILPLK----
	'Thermoanaerobacter indiensis WP_019907163.1'            MNS--IVFLVVIPIIAAFLSLFLGKVNKL----IAYIVTIFNLSFSIVVLVSGK-----IPFNVAIGGWRAPYGINFVVTDITIFFLLLINVAAVLSLTTIKEHMEYQ----FYAFYFILLAATNGMVLTGDIFNFYLFTELTTFAIGGLVAYKRDRLATGASLKYLILSSTASTFSLAAIGLIYKTLGTLNFADIASKISNLNKASLSLILILFISSMLVELKIFPFNIWVVKAYDASIPAVNLFLHGMVSTAGVYGAIRILLMVFSKNSIMLSQSSNIANILILLAFITVIISEIGALTEKNLIKVLAFSSMAQLGIFLFGISLGNYEALKGAFYIVISNYFAKFVMFIVAKNYSVIAGSRNYEDMKGLGRKYPGLAIAFTISALSLMGMPFFAGFWGKLSIVGNALLMDKIAIIGVIIILISSVIEGVYYLRISHTFFSDGNIQDTKLSRINCVLPIILAAVILIIGIYPNSIENIIWTMINEIQNTPEKYIQVILPLK----
	Thermoanaerobacter_siderophilus_EIW00253.1               MNS--IVFLVVIPIIAAFLSLFLGKVNKL----IAYIVTIFNLSFSVVVLVSGK-----IPFNVAIGGWRAPYGINFVVTDITIFFLLLINVAAVLSLTTIKEHMEYQ----FYAFYFILLAATNGMVLTGDIFNFYLFTELTTFAIGGLVAYKRDRLATGASLKYLILSSTASIFSLAAIGLIYKTLGTLNFADIASKISNLNKASLSLILILFISSMLVELKIFPFNLWVVKAYDASIPAVNLFLHGMVSTAGVYGAIRILLMVFSKNGVMSDQSSNIANILILLAFITVMIGEIGALTEKNLIKVLAFSSMAQLGIFLFGISLGNYEALKGAFYIVISNYFAKLIMFIVAKNYSVVAGSRNYNAMKGLGRKYPGLAIAFTISALSLMGMPFFAGFWGKLSIVGNALLMDKIAITGVIIILISSVIEGVYYLRISHTFFSDGNIQDTKLSRINCVLPIILAAVILIIGIYPNSIENIIWTMINEIQNTPEKYIQVILPLK----
	'Thermoanaerobacter thermohydrosulfuricus WP_004399466.1' MNS--IVFLVVIPIIAAFLSLFLGKVNKL----IAYIVTIFNLSFSIVVLVSGK-----IPFNVAIGGWRAPYGINFVVSDITIFFLLLINVAAVLSLTTIKEHMEYQ----FYAFYFILLAATNGMVLTGDIFNFYLFTELTTFAIGGLVAYKRDRLATGASLKYLILSSTASTFSLAAIGLIYKTLGTLNFADIASKISNLNKASLSLILILFISSMLVELKIFPFNIWVVKAYDASIPAVNLFLHGMVSTAGVYGAIRILLMVFSKNSIMLSQSSNIANILILLAFITVIISEIGALTEKNLIKVLAFSSMAQLGIFLFGISLGNYEALKGAFYIVISNYFAKFVMFIVAKNYSVIAGSRNYEDMKGLGRKYPGLAIAFTISALSLMGMPFFAGFWGKLSIVGNALLMDKIAIIGVIIILISSVIEGVYYLRISHTFFSDGNIQDTKLSRINCVLPIILAAVILIIGIYPNSIENIIWTMINEIQNTPEKYIQVILPLK----
	'Thermoanaerobacter wiegelii YP_004818838.1'             MNS--IVFLVVIPIIAAFLSLFLGKVNKL----IAYIVTIFNLSFSVVVLVSGK-----IPFNVAIGGWRAPYGINFVVTDITIFFLLLINVAAVLSLTTIKEHMEYQ----FYAFYFILLAATNGMVLTGDIFNFYLFTELTTFAIGGLVAYKRDRLATGASLKYLILSSTASTFSLAAIGLIYKTLGTLNFADIASKISNLNKASLSLILILFISSMLVELKIFPFNIWVVKAYDASIPAVNLFLHGMVSTAGVYGAIRILLMVFSKNGIMLSQSSNIANILILLAFITVIISEIGALTEKNLIKVLAFSSMAQLGIFLFGISLGNYEALKGAFYIVISNYFAKLVMFIVAKNYSVIAGSRNYDDMKGLGRKYPILAIAFTISALSLMGMPFFAGFWGKLSIVGNALLMGKIAITGVIIILISSVIEGVYYLRISHTFFSDRNIQGTELSRINCVLPIVLAAVILIIGIYPHSIENIIWTMINEIQNTPEKYIQVILSLK----
	Thermobrachium_celere_CDF59381.1                         MNS--IVFLVVIPLIAAFLSLFLEKLNKL----AMYIVTLFNLIFSITVLMSGN-----IPFNVAIGGWRAPFGINFVVTDITIYFLLLVNIAALISITVVNNIKEYQ----FYSFYFVLLAATNGMVLTGDMFNFYLFTELSTFAIAGLVAYKRDRLSTGAALKFLILSSTASLFSLASIGLIYKTLGTLNFADIALKLSKLNQASYNLILILFLSSMLVELKIFPFNLWVVKSYEGSITSVNMFTHGMLGTAGIYGAIRILLIVFPNMY-----STNISKVLIILSVFTVLIGEVGALKEKNLVKILAFSSMAQMGVFMFGIALGSFESIKGALYIVVSNYLAKLVMFLVTKQYSNAVESKNYIDMKGLGRKYPILAISFTIAALSLMGMPFFAGFWGKFSIVVSALALGKLSTIGIAILLIASVVEGVYYLRISHTFFAEKDVNSVNISRVYSLIPFVLAAIILAIGIYPNFIEQILWNVIDEIKNAPDKYINIILSLK----
	'Thermococcus sp. 4557 YP_004762126.1'                   MNGQYASLLIALPLISAFFVPLIKGAGKKAVKYYLIAVTAVQTGIAAWVFQQVYTTG--QPIIVMAGAWRPPVGINLYIGHFAALFVLIVAVVSFLMAVFSLRAVKVEPIDKYAMLFLLLMLGATGMIATGDLFNLFVFMEITAISAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGIALIYGSLGTLNMAQIAQLAGGMDATVAQVGLALIVFGLAVEAELFPLNAWAPDAYQAAPHPITAMFSAFVVKAGLYAMARLLYLMQAVES-----WHSVLKLLIIMATLTVFVAEFAALRQRNVKRMIAYSSIAQIGLIALAFALGTQSGVDAGVFHMVNHAIVKALLFLAVGHVAVTLGGAEMERFEGLGKKMPLTAFAITVGAVAAVGIPLFNIFWSKLRILLAAIGAGYAWAAA--IVLIASVVEAVYYFRLIHTMWFAGEGERISEGLAVSLMLLFLAALVIVIGVYPDYAWNIAQKAGNDIFNVAQ-YIKNV-PLMGVGA

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  506;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  9;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  506;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  506;
END;

BEGIN TREES;
	Title 'Trees from "MbxH.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		n0 'Caldanaerobacter subterraneus yonseiensis_ERM91255.1',
[1] 		n1 'Caloramator australicus WP_008908957.1',
[2] 		n2 Thermoanaerobacter_ethanolicus_EGD52036.1,
[3] 		n3 'Thermoanaerobacter indiensis WP_019907163.1',
[4] 		n4 Thermoanaerobacter_siderophilus_EIW00253.1,
[5] 		n5 'Thermoanaerobacter thermohydrosulfuricus WP_004399466.1',
[6] 		n6 'Thermoanaerobacter wiegelii YP_004818838.1',
[7] 		n7 Thermobrachium_celere_CDF59381.1,
[8] 		n8 'Thermococcus sp. 4557 YP_004762126.1';
	TREE tree_1 = (n8:1.1481705,((((n0:0.002046,(n5:0.002049,n3:0.000001)0.8800:0.004129)0.8070:0.004947,(n4:0.000001,n2:0.000001)0.9820:0.016841)0.4150:0.007808,n6:0.010791)0.0150:0.053942,(n1:0.212894,n7:0.232487)0.0340:0.088046)0.0000:0.8276375)root;

END;


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				tell It;
					panelOpen false;
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		endTell;
end;