#NEXUS
[written Wed Aug 26 01:11:44 BRT 2015 by Mesquite  version 3.04 (build 725) at fernando-HP-Pavilion-15-Notebook-PC/127.0.1.1]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=15;
	TAXLABELS
		'Caldanaerobacter subterraneus pacificus_CDSM653_0105' 'Caldanaerobacter subterraneus tengcongensis_NP_621827.1' 'Caldanaerobacter subterraneus yonseiensis_ERM91338.1' 'Coprothermobacter platensis WP_018962513.1' 'Thermoanaerobacter ethanolicus WP_003868941.1' 'Thermoanaerobacter indiensis WP_019907186.1' 'Thermoanaerobacter italicus YP_003477426.1' 'Thermoanaerobacter mathranii YP_003677322.1' 'Thermoanaerobacter siderophilus WP_006569905.1' 'Thermoanaerobacter thermohydrosulfuricus WP_004399987.1' 'Thermoanaerobacter wiegelii YP_004818932.1' 'Thermoanaerobacterium saccharolyticum YP_006391302.1' 'Thermoanaerobacterium thermosaccharolyticum YP_003850794.1' 'Thermoanaerobacterium thermosaccharolyticum YP_007297552.1' 'Thermoanaerobacterium xylanolyticum YP_004469845.1' 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=424;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	'Caldanaerobacter subterraneus pacificus_CDSM653_0105'      -------MSEK-STIPFGPQHPVLPEPIHLKLIVEDEKVVEAYPAFGYVHRGLELLVKKRDFNQMVYVVDHICGICSAIHGETYCQAVEKLIGIDVPERAKFLRVIWAEIHRIHSHLLWFGLLADAFGFENLFMLSWRIREKVMDILEATAGNRVVISVNIVGGVRRDIDSEQAKWVLAQLKEVEEGL-KEIEKIVRDNYTLKKRTVGIGVLSKEEAYMLGAVGPTLRGSGVPIDTRTLGYAAYKYLDFEPVVEKDGDTYARTLVRLREMFQSIDLVRQAISKMP-EG--E---------------------------------------------------INVKVKPN-LPAGEVIERAEQPRGEVFYYIKSNGGKYLDRLRIRTPTFANLAALLHMLPGCTLADVPVLVLTIDPCISCTER
	'Caldanaerobacter subterraneus tengcongensis_NP_621827.1'   -------MSEK-STIPFGPQHPVLPEPIHLKLIVEDEKVVEAYPAFGYVHRGLELLVKKRDFNQMVYVVDHICGICSAIHGETYCQAVEKLIGIDVPERAKFLRVIWAEIHRIHSHLLWFGLLADAFGFENLFMLSWRIREKVMDILEATAGNRVVISVNIVGGVRRDIDSEQAKWVLAQLKEVEEGL-KEIEKIVRDNYTLKKRTVGIGVLSKEEAYMLGAVGPTLRGSGVPIDTRTLGYAAYKYLDFEPVVEKDGDTYARTLVRLREMFQSIDLVRQAISKMP-EG--E---------------------------------------------------INVKVKPN-LPAGEVIERAEQPRGEVFYYIKSNGGKYLDRLRIRTPTFANLAALLHMLPGCTLADVPVLVLTIDPCISCTER
	'Caldanaerobacter subterraneus yonseiensis_ERM91338.1'      ----MIRMSEK-STIPFGPQHPVLPEPIHLKLIVEDEKVVEAYPAFGYVHRGLELLVKKRDFNQMVYVVDHICGICSAIHGETYCQAVEKLIGIDVPERAKFLRVIWAEIHRIHSHLLWFGLLADAFGFENLFMLSWRIREKVMDILEATAGNRVVISVNIVGGVRRDIDSEQAKWVLAQLKEVEEGL-KEIEKIVRDNYTLKKRTVGIGVLSKEEAYMLGAVGPTLRGSGVPIDTRTLGYAAYKYLDFEPVVEKDGDTYARTLVRLREMFQSIDLVRQAISKMP-EG--E---------------------------------------------------INVKVKPN-LPAGEVIERAEQPRGEVFYYIKSNGGKYLDRLRIRTPTFANLAVLLHMLPGCTLADVPVLVLTIDPCISCTER
	'Coprothermobacter platensis WP_018962513.1'                -----MPDSNI-SFIPFGPQHPVLPEPIHLRLVVENEKVVEALPTVGYVHRGLEKMVEAKDVNQMIYVVERICGICSCMHAMAYCQGIEELMNVEIPERAKYLRVIWAELHRMHSHLLWLGLLADSFGYESLFMQTWRIRERVMDILDKTAGNRVIISVNVIGGVRRDIDTEMQKWVLQSLDAIEKDL-REIYNVMKDDYTVKQRTVGVGVLSADDARELGLVGPMLRASGVASDHRMTGYAAYKDLDFEPVVETAGDSYARMIVRMKELFQSIDLIRKAFARMP-EG--D---------------------------------------------------IAVKVRGN--PTGEVISRVEQSRGEVLYYIKADGTKNLSRLRVRTPTFANIAALFKILPGCSLSDVPVLVLTIDPCISCTER
	'Thermoanaerobacter ethanolicus WP_003868941.1'             ----MIRMSEK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPAFGFVHRGLELLVKKKDFNQMVYVVDHICGICSAMHGQAYCQAVEELIGVDVPERAKYLRVIWAEIHRIHSHLLWFGLLADAFGFENLFMLSWRIREKIMDILEATAGNRVIISVNIVGGVRRDINSEQAKWLLNELKEVEEGL-KELDKIVRNNYTIKQRTVGVGVLSKDEAYKLGAVGPTLRGSGVPIDMRTTGYAAYKDLNFEPIVEKDGDTYARTIVRVKEMFQSIDLARQAISKLP-EG--E---------------------------------------------------INVKVKPN-LPAGEVISRVEQPRGEVFYYIKSTGGKYLDRLRIRTPTFANLASLLHMLPGSTLADVPVLVLTIDPCISCTER
	'Thermoanaerobacter indiensis WP_019907186.1'               -------MSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGFVHRGLEMLVQKKDFNQMVYVVDHICGICSAMHGQAYCQAVEELIGIDVPERAKYLRVVWAELHRIHSHLLWFGLLADAFGFENLFMLSWRIREKIMDILEATAGNRVIISVNIVGGVRRDIDTEQAKWLLNELKEVEEGL-KELEKIVKNNYTIKQRTVGIGVLSKEDAYMFGAVGPTLRGSGVPIDIRTTGYAAYGNLDFEPVVETDGDTYARTIVRVREMFQSIDLVRQALNKMP-EG--E---------------------------------------------------INVKVKPN-LPAGEVITRVEQPRGEVFYYIKSSGGKNLDRLRIRTPTFANLASLLHMLPGSTLADVPVLVLTIDPCISCTER
	'Thermoanaerobacter italicus YP_003477426.1'                -------MSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGYVHRGLEMLAQKKDVNQMVYVVERVCGICSAMHGQAYCQGVESLLNIEVPERAKYLRVIWAELHRIHSHLLWLGLMADAFGFENLFMLTWRIREKIMDILEATSGNRVIISVNIIGGVRKDIDGEQAKWILKELDKIEKEL-KEVNKVVRNNYTIKQRTVGIGVLTKDDAYILGATGPVAKGSGVAIDMRMTGYAAYGDLDFEPVTETDGDTYARTIVRMREIFQSIDLVRQAINKMP-EG--E---------------------------------------------------IAIKVKGN-LPAGEVISRVEQSRGEVFYYLKSSGGKNLERLRIRTPTFANLAALLKMLPGSSLADVPVLVLTIDPCISCTER
	'Thermoanaerobacter mathranii YP_003677322.1'               -------MSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGYVHRGLEMLAQKKDVNQMVYVVERVCGICSAMHGQAYCQGVESLLNIEVPERAKYLRVIWAELHRIHSHLLWLGLMADAFGFENLFMLTWRIREKIMDILEATSGNRVIISVNIIGGVRKDIDGEQAKWILKELDKIEEEL-KEVNKVVRNNYTIKQRTVGIGVLTKDDAYILGATGPVAKGSGVAIDMRMTGYAAYGDLDFEPVTETDGDTYARTIVRMREIFQSIDLVRQAINKMP-EG--E---------------------------------------------------IAIKVKGN-LPAGEVISRVEQSRGEVFYYLKSSGGKNLERLRIRTPTFANLAALLKMLPGSSLADVPVLVLTIDPCISCTER
	'Thermoanaerobacter siderophilus WP_006569905.1'            ----MIRMSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGFVHRGLEMLVQRKDFNQMVYVVDHICGICSAMHGQAYCQAVEELIGIDVPERAKYLRVVWAELHRIHSHLLWFGLLADAFGFENLFMLSWRIREKIMDILEATAGNRVIISVNIVGGVRRDIDTEQAKWLLNELKEVEEGL-KELEKIVKNNYTIKQRTVGIGVLSKEDAYMFGAVGPTLRGSGVPIDMRTTGYAAYGNLDFEPVVETDGDTYARTIVRVREMFQSIDLVRQALNKMP-EG--E---------------------------------------------------INVKVKPN-LPAGEVITRVEQPRGEVFYYIKSSGGKNLDRLRIRTPTFANLASLLHMLPGSTLADVPVLVLTIDPCISCTER
	'Thermoanaerobacter thermohydrosulfuricus WP_004399987.1'   ----MIRMSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGFVHRGLEMLVQKKDFNQMVYVVDHICGICSAMHGQAYCQAVEELIGIDVPERAKYLRVVWAELHRIHSHLLWFGLLADAFGFENLFMLSWRIREKIMDILEATAGNRVIISVNIVGGVRRDIDTEQAKWLLNELKEVEEGL-KELEKIVKNNYTIKQRTVGIGVLSKEDAYMFGAVGPTLRGSGVPIDIRTTGYAAYGNLDFEPVVETDGDTYARTIVRVREMFQSIDLVRQALNKMP-EG--E---------------------------------------------------INVKVKPN-LPAGEVITRVEQPRGEVFYYIKSSGGKNLDRLRIRTPTFANLASLLHMLPGSTLADVPVLVLTIDPCISCTER
	'Thermoanaerobacter wiegelii YP_004818932.1'                ----MIRMSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGFVHRGLEMLVQKKDFNQMVYVVDHICGICSAMHGQAYCQAVEELIGIDVPERAKYLRVVWAELHRIHSHLLWFGLLADAFGFENLFMLSWRIREKIMDILEATAGNRVIISVNIVGGVRRDIDTEQAKWLLNELKEVEEGL-KELEKIVKNNYTIKQRTVGIGVLSKEDAYMFGAVGPTLRGSGVPIDMRTTGYAAYGNLDFEPVVETDGDTYARTIVRVREMFQSIDLVRQALNKMP-EG--E---------------------------------------------------INVKVKPN-LPAGEVITRVEQPRGEVFYYIKSSGGKNLDRLRIRTPTFANLASLLHMLPGSTLADVPVLVLTIDPCISCTER
	'Thermoanaerobacterium saccharolyticum YP_006391302.1'      -------MSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPAFGFVHRGLETLAQKKDFNQMVYVVERVCGICSCMHGQDYCEAIEELMGVQVPVRAEYLRTIWAELHRIHSHLLWLGLFADAFGFENLFMQTWKIREKIMDILEATSGNRVIISVNIVGGVRKDINSEQAKWILKELDDVERQL-KDINDVVMNNYTVKQRTVGIGVLTKEEAYELGATGPMAKGSGVDLDLRTTGYAAYKYLDFEPIVEKAGDSYARNLVRMREIFQSIDLIRQALGKMP-EG--E---------------------------------------------------ISVPVKGN-PPAGEVISRLEQSRGEVVYYIKSNGTKFLDRLRIRTPTFANIPALLKILPGSHLQDVPVLILTIDPCISCTER
	'Thermoanaerobacterium thermosaccharolyticum YP_003850794.1' -------MSEK-GTIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPAFGFVHRGLETLAQKKDFNQMVYVVERVCGICSCMHGQDYCQAIEELMGIEVPIRAEYLRTIWAELHRIHSHLLWLGLFADAFGFENLFMQTWKIREKIMDILEATSGNRVIISVNIVGGVRKDISNDQAKWILRELDDVEKQL-KDINDVVMNNYTVKERTVGIGVLTKEEAYELGATGPMAKGSGVDLDLRTTGYAAYKYLDFEPIVEKSGDSYARNLVRMKEIFQSIDLIRQALSKMP-EG--D---------------------------------------------------INVPVKGN-PPAGEVISRLEQSRGEVVYYIKSNGTKFLDRLRIRTPTFANIPALLKILPGSQLQDVPVLILTIDPCISCTER
	'Thermoanaerobacterium thermosaccharolyticum YP_007297552.1' -------MSEK-GTIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPAFGFVHRGLETLAQKKDFNQMVYVVERVCGICSCMHGQDYCQAIEELMGIEVPIRAEYLRTIWAELHRIHSHLLWLGLFADSFGFENLFMQTWKIREKIMDILEATSGNRVIISVNIVGGVRKDISNDQAKWILRELDDVEKQL-KDINDVVMNNYTVKERTVGIGVLTKEEAYELGATGPMAKGSGVDLDLRTTGYAAYKYLDFEPIVEKSGDSYARNLVRMKEIFQSIDLIRQALSKMP-EG--D---------------------------------------------------INVPVKGN-PPAGEVISRLEQSRGEVVYYIKSNGTKFLDRLRIRTPTFANIPALLKILPGSQLQDVPVLILTIDPCISCTER
	'Thermoanaerobacterium xylanolyticum YP_004469845.1'        -------MSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPAFGFVHRGLETLAQKKDFNQMVYVVERVCGICSCMHGEDYCEAIEELMGVQVPVRAEYLRTIWAELHRIHSHLLWLGLFADAFGFENLFMQTWKIREKIMDILEATSGNRVIISVNIVGGVRKDINSEQAKWILKELDEVERQL-KDINDVVMNNYTVKQRTVGIGVLTKEEAYELGATGPMAKGSGVDLDLRTTGYAAYKYLDFEPIVEKDGDSYARNLVRMREIFQSIDLVRQALGKMP-EG--E---------------------------------------------------ISVPVKGN-PPAGEVISRLEQSRGEVVYYIKSNGTKFLDRLRIRTPTFANIPALLKILPGSHLQDVPVLILTIDPCISCTER

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  424;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  15;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  424;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  424;
END;

BEGIN TREES;
	Title 'Trees from "echE.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		n0 'Caldanaerobacter subterraneus pacificus_CDSM653_0105',
[1] 		n1 'Caldanaerobacter subterraneus tengcongensis_NP_621827.1',
[2] 		n2 'Caldanaerobacter subterraneus yonseiensis_ERM91338.1',
[3] 		n3 'Coprothermobacter platensis WP_018962513.1',
[4] 		n4 'Thermoanaerobacter ethanolicus WP_003868941.1',
[5] 		n5 'Thermoanaerobacter indiensis WP_019907186.1',
[6] 		n6 'Thermoanaerobacter italicus YP_003477426.1',
[7] 		n7 'Thermoanaerobacter mathranii YP_003677322.1',
[8] 		n8 'Thermoanaerobacter siderophilus WP_006569905.1',
[9] 		n9 'Thermoanaerobacter thermohydrosulfuricus WP_004399987.1',
[10] 		n10 'Thermoanaerobacter wiegelii YP_004818932.1',
[11] 		n11 'Thermoanaerobacterium saccharolyticum YP_006391302.1',
[12] 		n12 'Thermoanaerobacterium thermosaccharolyticum YP_003850794.1',
[13] 		n13 'Thermoanaerobacterium thermosaccharolyticum YP_007297552.1',
[14] 		n14 'Thermoanaerobacterium xylanolyticum YP_004469845.1';
	TREE tree_1 = (n3:0.216725,(((n13:0.002874,n12:0.000001)0.9840:0.038483,(n11:0.002304,n14:0.009466)0.3720:0.015574)0.9990:0.130745,((n6:0.000001,n7:0.002865)0.9570:0.054605,((((n0:0.000001,n1:0.000001)0.0000:0.000001,n2:0.00295)1.0000:0.087066,n4:0.036292)0.9650:0.031476,(n8:0.002881,((n9:0.000001,n5:0.000001)0.9130:0.002888,n10:0.000001)0.0000:0.000001)0.9140:0.020625)1.0000:0.11427)0.9120:0.056414)0.9910:0.083469)root;

END;


Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1440562304718;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 6327785801028268918;
			tell It;
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				attachments ;
			endTell;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 2059369993970253921;
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			desuppress;
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		getEmployee  #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
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			tell It;
				setTaxa #6327785801028268918;
				getWindow;
				tell It;
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					setLocation 51 24;
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					setFontSize 10;
					getToolPalette;
					tell It;
						setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam;
					endTell;
					setActive;
				endTell;
				showWindow;
				getEmployee #mesquite.lists.ColorTaxon.ColorTaxon;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel;
				tell It;
					togglePanel off;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #2059369993970253921 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
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				tell It;
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				endTell;
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					colorColumnNames  #mesquite.charMatrices.CharGroupColor.CharGroupColor;
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					togglePaleInapplicable on;
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				endTell;
				showWindow;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
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				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
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				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
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				endTell;
				getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
				tell It;
					showStrip off;
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				getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
				tell It;
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				endTell;
				getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;