#NEXUS
[written Wed Aug 26 10:54:01 BRT 2015 by Mesquite  version 3.04 (build 725) at fernando-HP-Pavilion-15-Notebook-PC/127.0.1.1]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=11;
	TAXLABELS
		'Caldanaerobacter subterraneus pacificus_CDSM653_0110' 'Caldanaerobacter subterraneus tengcongensis_NP_621832.1' 'Caldanaerobacter subterraneus yonseiensis_ERM91342.1' 'Thermoanaerobacter ethanolicus WP_003868946.1' 'Thermoanaerobacter italicus YP_003477421.1' 'Thermoanaerobacter wiegelii YP_004818937.1' 'Thermoanaerobacter mathranii YP_003677317.1' 'Thermoanaerobacterium saccharolyticum YP_006391307.1' 'Thermoanaerobacterium xylanolyticum YP_004469850.1' 'Thermoanaerobacterium thermosaccharolyticum YP_007297557.1' 'Thermoanaerobacterium thermosaccharolyticum YP_003850799.1' 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=133;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	'Caldanaerobacter subterraneus pacificus_CDSM653_0110'      --------------------VCIAVPSKVLKI---E-----------GKIAETELGGVIRRVSIEMVPDVKVGDYVMVHAGVAISIVDKEEAEAQRGLWNELMEVLNDAAEGNS-------------------
	'Caldanaerobacter subterraneus tengcongensis_NP_621832.1'   --------------------MCIAVPSKVLKI---E-----------GKIAETELGGVIRRVSIEMVPDVKVGDYVMVHAGVAISIVDKEEAEAQRGLWNELMEVLNDAAEGNS-------------------
	'Caldanaerobacter subterraneus yonseiensis_ERM91342.1'      --------------------MCIAVPSKVLKI---E-----------GKIAETELGGVIRRVSIEMVPDVKVGDYVMVHAGVAISIVDKEEAEAQRELWNELMEVLNDAAEGNS-------------------
	'Thermoanaerobacter ethanolicus WP_003868946.1'             --------------------MCIAVPSKVLKI---E-----------GKVAETELGGVIRRVSIEMVPEVKVGDYVMVHAGLAISIVDKEEAEMERELWEELMEVLNDAADRND-------------------
	'Thermoanaerobacter italicus YP_003477421.1'                --------------------MCIAVPSKVLKI---E-----------GKIAETELGGVIRRVSIEMVPEVKVGDYVMVHAGLAISIVNKEEAEMERELWEELMEVLQDATNGND-------------------
	'Thermoanaerobacter wiegelii YP_004818937.1'                --------------------MCIAVPSKVIKI---E-----------GKVAETELGGVIRKVSIEMVPEVKVGDYVMVHAGLAISIVDKEEAEMERELWEELMEVLNDAADRND-------------------
	'Thermoanaerobacter mathranii YP_003677317.1'               --------------------MCIAVPAKVLKI---E-----------GKIAETELGGVIRRVSIEMVPEVKVGDYVMVHAGLAISIVNKEEAEVERELWEELMEVLQDATNGND-------------------
	'Thermoanaerobacterium saccharolyticum YP_006391307.1'      --------------------MCIAVAQKVLKI---D-----------GDVAETELNGLKRRVSISMVPDVKIGDYVMVHAGVAISIVDKETAEEDLKLWEEMEEALRESFKQN--------------------
	'Thermoanaerobacterium xylanolyticum YP_004469850.1'        --------------------MCIAVAQKVVKI---E-----------GDVAETELNGLKRRVSISMVPDVKIGDYVMVHAGVAISIVDKETAEEDLRLWEEMEEALRESFKQN--------------------
	'Thermoanaerobacterium thermosaccharolyticum YP_007297557.1' --------------------MCIAVAQKVVKI---D-----------GDVAETELNGLKRRVSIAMVPDVKIGDYVMVHAGVAISIVDKETAEEDLKLWKEMEEALRESFKQN--------------------
	'Thermoanaerobacterium thermosaccharolyticum YP_003850799.1' --------------------MCIAVAQKVVKI---D-----------GDVAETELNGLKRRVSISMVPGVKIGDYVMVHAGVAISIVDKETAEEDLKLWKEMEEALRESLE----------------------

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  133;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  11;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  133;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  133;
END;

BEGIN TREES;
	Title 'Trees from "hypC.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		n0 'Caldanaerobacter subterraneus pacificus_CDSM653_0110',
[1] 		n1 'Caldanaerobacter subterraneus tengcongensis_NP_621832.1',
[2] 		n2 'Caldanaerobacter subterraneus yonseiensis_ERM91342.1',
[3] 		n3 'Thermoanaerobacter ethanolicus WP_003868946.1',
[4] 		n4 'Thermoanaerobacter italicus YP_003477421.1',
[5] 		n5 'Thermoanaerobacter wiegelii YP_004818937.1',
[6] 		n6 'Thermoanaerobacter mathranii YP_003677317.1',
[7] 		n7 'Thermoanaerobacterium saccharolyticum YP_006391307.1',
[8] 		n8 'Thermoanaerobacterium xylanolyticum YP_004469850.1',
[9] 		n9 'Thermoanaerobacterium thermosaccharolyticum YP_007297557.1',
[10] 		n10 'Thermoanaerobacterium thermosaccharolyticum YP_003850799.1';
	TREE tree_1 = ((n7:0.000001,(n8:0.024328,(n9:0.012174,n10:0.012331)0.7640:0.012305)0.5240:0.012382)0.9680:0.209017,(((n5:0.024538,n3:0.000001)0.7670:0.011266,(n6:0.024942,n4:0.000001)0.7700:0.013178)0.8290:0.039399,(n2:0.000001,(n1:0.000001,n0:0.012386)0.8460:0.012475)0.8030:0.028049)0.8150:0.065699)root;

END;


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