#NEXUS
[written Wed Aug 26 11:06:38 BRT 2015 by Mesquite  version 3.04 (build 725) at fernando-HP-Pavilion-15-Notebook-PC/127.0.1.1]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=13;
	TAXLABELS
		'Caldanaerobacter subterraneus tengcongensis_3VTH' 'Caldanaerobacter subterraneus tengcongensis_NP_621831.1' 'Caldanaerobacter subterraneus pacificus_CDSM653_0109' 'Thermoanaerobacter WP_004399983.1' 'Thermoanaerobacter siderophilus WP_006569907.1' 'Thermoanaerobacter ethanolicus WP_003868945.1' 'Thermoanaerobacter wiegelii YP_004818936.1' 'Thermoanaerobacter italicus YP_003477422.1' 'Thermoanaerobacter mathranii YP_003677318.1' 'Thermoanaerobacterium saccharolyticum YP_006391306.1' 'Thermoanaerobacterium thermosaccharolyticum YP_003850798.1' 'Thermoanaerobacterium thermosaccharolyticum YP_007297556.1' 'Thermoanaerobacterium xylanolyticum YP_004469849.1' 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=992;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	'Caldanaerobacter subterraneus tengcongensis_3VTH'          -------------------------------------MVRGRVPQIQARQINIFGIVQGVGFRPFVFNIAQKYNLKGIVYNNSSGLYIEVEGEEKDIEAFIREIKENPPSLSVIDEIQVREVE---VK-EY--KDFKIVGS--KEDGGFVPVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDCGPSLSF--VGEGCFD---------------------DEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRYGKPFAVMMRDVEEVKKYCIVSPEEERLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-IADDLDTLGVMLPYAPIHYLLMEEI-------D-FP--------IVMTSGNVSEEPICKDNEEALEKLKDIADVFLLNNRDIVNRIDDSVTS---FNA-GAE---------------------RIIRRARGYAPQPILL----K-KE----V-----KASILAVGGFYKNTFCMTKGHYAFISHHIGDLDNEKAFNYYIEQIERYKKLFRVDPEVVAHDMHKGYLSTQYAKS----LD-LPK---IEVQHHHAHIASCMAEH-------NL--DEKVIGIAYDGTGYGTDGNVWGAEILVCDLK-SFERIAHLKYKPLPGNELAIKKIYRTALGFIF-------DNISFY------KNFVEQVDSRELDIILKQIDRKINTAYVSSMGRFFDAVAALIGVRK--EVLFEGQAAMELESLMAE-----SEEY---------------YEYEI-----LKED----RYVIDPELILRQIYEDYMKGF-EKSYISAKFHNTVVNFTYDLANLIRKETGINKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGGISLGQAVIANK--ILEGSAWSHPQFEK---------
	'Caldanaerobacter subterraneus tengcongensis_NP_621831.1'   -------------------------------------MVRGRVPQIQARQINIFGIVQGVGFRPFVFNIAQKYNLKGIVYNNSSGLYIEVEGEEKDIEAFIREIKENPPSLSVIDEIQVREVE---VK-EY--KDFKIVGS--KEDGGFVPVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDCGPSLSF--VGEGCFD---------------------DEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRYGKPFAVMMRDVEEVKKYCIVSPEEERLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-IADDLDTLGVMLPYAPIHYLLMEEI-------D-FP--------IVMTSGNVSEEPICKDNEEALEKLKDIADVFLLNNRDIVNRIDDSVTS---FNA-GAE---------------------RIIRRARGYAPQPILL----K-KE----V-----KASILAVGGFYKNTFCMTKGHYAFISHHIGDLDNEKAFNYYIEQIERYKKLFRVDPEVVAHDMHKGYLSTQYAKS----LD-LPK---IEVQHHHAHIASCMAEH-------NL--DEKVIGIAYDGTGYGTDGNVWGAEILVCDLK-SFERIAHLKYKPLPGNELAIKKIYRTALGFIF-------DNISFY------KNFVEQVDSRELDIILKQIDRKINTAYVSSMGRFFDAVAALIGVRK--EVLFEGQAAMELESLMAE-----SEEY---------------YEYEI-----LKED----RYVIDPELILRQIYEDYMKGF-EKSYISAKFHNTVVNFTYDLANLIRKETGINKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGGISLGQAVIANK--ILEG-------------------
	'Caldanaerobacter subterraneus pacificus_CDSM653_0109'      -------------------------------------MVRGRVPQIQARQINIFGIVQGVGFRPFVFNIAQKYNLKGIVYNNSSGLYIEVEGEEKDIEAFIREIKENPPSLSVIDEIQVREVE---VK-EY--KDFKIVGS--KEDGGFVPVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDCGPSLSF--VGEGCFD---------------------DEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRYGKPFAVMMRDVEEVKKYCIVSPEEERLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-IADDLDTLGVMLPYAPIHYLLMEEI-------D-FP--------IVMTSGNVSEEPICKDNEEALEKLKDIADVFLLNNRDIVNRIDDSVTS---FNA-GAE---------------------RIIRRARGYAPQPILL----K-KE----V-----KASILAVGGFYKNTFCMTKGHYAFISHHIGDLDNEKAFNYYIEQIERYKKLFRVDPEVVAHDMHKGYLSTQYAKS----LD-LPK---IEVQHHHAHIASCMAEH-------NL--DEKVIGIAYDGTGYGTDGNVWGAEILVCDLK-SFERIAHLKYKPLPGNELAIKKIYRTALGFIF-------DNISFY------KNFVEQVDSRELDIILKQIDRKINTAYVSSMGRFFDAVAALIGVRK--EVLFEGQAAMELESLMAE-----SEEY---------------YEYEI-----LKED----GYVIDPELILRQIYEDYMKGF-EKSYISAKFHNTVVNFTYDLANLIRKETGINKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGGISLGQAVIANK--ILEG-------------------
	'Thermoanaerobacter WP_004399983.1'                         -------------------------------------MVRRRVSKIQAKQIDIFGIVQGVGFRPFVFTTAQKYNLRGIVYNTSSGVYIEVEGEEGDINSFIKELKDNPPPLAVIDEIKVKDLE---IK-NY--EDFKIISS--QENDGFVPVSPDMGVCEDCLREMNDPNDRRYKYPFINCTNCGPRFSIIEDIPYDRPKTSMKVFPMCEKCEKEYNDPHDRRFHAQPVACFDCGPKLEF--VGGNCEE---------------------DEIKCVADALKRGKIVAIKGIGGFHLAVNALSDEAVFTLRSRKKRYGKPFAVMMKDINQVEKYCFVSDEEKKLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-VADGLDTLGVMLPYAPIHYLLMDQI-------D-FP--------IVMTSGNVSEEPICKDNEEALEKLKDIADAFLLNNRDIVNRIDDSVTS---FNG-GAE---------------------RIIRRARGYAPQPILL----K-KD----A-----KVNVLAVGGFYKNTFCMTHGHYAFISHHIGDLDNEQAFEYYKEQIERYKRLFRVNPEVIAHDMHKGYLSTQYALS----CD-LPR---VEVQHHHAHIVSCMAEY-------NL--EEKVIGIAYDGTGYGTDGNIWGAEFLICDLK-DFLRVGHLEYKPLPGGELAIKKIYRTALGFIS-------KDINFY------KDFVEKFDSKEIDIILKQIERKINTPYVSSMGRFFDAAASLLGLRD--QVLFEGQGAMELESLIVE-----NDDF---------------YDFEV-----YRDR----EYIINPEVILHQLYEDYKKGI-DRKIIATKFHNSIVEFSHYLALELRKEFGINKVVLSGGSFQNRYLLKKLLAKLTASGFEAFSNSKVPCNDGGISLGQAVIANK--KLEG-------------------
	'Thermoanaerobacter siderophilus WP_006569907.1'            -------------------------------------MVRRRVSKIQAKQIDIFGIVQGVGFRPFVFTTAQKYNLRGIVYNTSSGVYIEVEGEEGDINSFIKELKDNPPPLAVIDEIKVKDLE---IK-NY--EDFKIISS--QENDGFVPVSPDMGVCEDCLREMNDPNDRRYKYPFINCTNCGPRFSIIEDIPYDRPKTSMKVFPMCEKCEKEYNDPHDRRFHAQPVACFDCGPKLEF--VGGNCEE---------------------DEIKCVADALKRGKIVAIKGIGGFHLAVNALSDEAVFTLRSRKKRYGKPFAVMMKDINQVEKYCFVSDEEKKLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-VADGLDTLGVMLPYAPIHYLLMDQI-------D-FP--------IVMTSGNVSEEPICKDNEEALEKLKDIADAFLLNNRDIVNRIDDSVTS---FNG-GAE---------------------RIIRRARGYAPQPILL----K-KD----A-----KVNVLAVGGFYKNTFCMTRGQYAFISHHIGDLDNEKTFEYYKEQIERYKRLFRVNPEVIAHDMHKGYLSTQYALS----CD-LPR---VEVQHHHAHIVSCMAEY-------NL--EEKVIGIAYDGTGYGTDGNIWGAEFLICDLK-DFLRVGHLEYKPLPGGELAIKKIYRTALGFIS-------KDINFY------KDFVEKFDSKEIDIILKQIERKINTPYVSSMGRFFDAAASLLGLRD--QVLFEGQGAMELESLIVE-----NDDF---------------YDFEV-----YRDR----EYIINPEVILHQLYEDYKKGI-NRKIIATKFHNSIVEFTHYLALELRKEFGINKVVLSGGSFQNRYLLKKLLAKLTASGFEAFSNSKVPCNDGGISLGQAVIANK--KLEG-------------------
	'Thermoanaerobacter ethanolicus WP_003868945.1'             -------------------------------------MVRRRVSQIQARQINIYGIVQGVGFRPFVFNIAQKYNLKGMIYNNSSGVYIEVEGEKENVECFIKEIKENPPSLAVIDEIKIKESE---VK-NY--REFKIMES--KEDDGFVPVSPDMGVCDDCLKEMNDPNDRRYRYPFINCTNCGPRFSIIEDIPYDRPKTSMKVFPMCGKCEQEYNNPNDRRFHAQPVACFDCGPKLEF--VGDNCQE---------------------DEIKCAVDALKRGKILAIKGIGGFHLAVNALDDEAVSTLRSRKKRYGKPFAVMMKDIKQVKEYCILSEEEKKLLLSQRKPIVLLK-------------------KK------GEK--------LARG-VADGLDTLGVMLPYAPIHYLLMEEI-------D-FP--------IVMTSGNVSEEPLCKDNEEALEKLKDIADVFLLNNRDIVNKIDDSVTS---FNG-GAE---------------------RIIRRARGYAPQPLLL----K-KD----V-----KANVLAVGGFYKNTFCMTRGQYAFISHHIGDLDNEKTFEYYKEQIERYKGLFRVTPQVIAHDMHKGYLSTQYALS----CD-LPR---IEVQHHHAHIASCMAEY-------NI--TDKVIGIAYDGTGYGTDGNIWGAEFLICDLK-DFLRVGHLKYKPLPGGELAIRKIYRVALGFIS-------EDINFY------KDFVERFDSREVDLILKQIEKRINTPYVSSMGRLFDAAASLLGVRD--QVLFEGQGAMELESLIIE-----NDDF---------------YDFDV-----YRDE----EYIINPEMILHQLYEDYKNGI-DKRIIATKFHNSIVEFTHYLALELRKEFGINKVVLSGGSFQNRYLLKKLLAKLTASGFEAYSNSKVPCNDGGISLGQAVIANK--KLEG-------------------
	'Thermoanaerobacter wiegelii YP_004818936.1'                -------------------------------------MVRRRVSKIQAKQIDIFGIVQGVGFRPFVFTTAQKYNLRGIVYNTSSGVYIEVEGQEGDINSFIKELKDNPPPLAVIDEIKVKDLE---IK-NY--EDFKIISS--QENDGFVPVSPDMGVCEDCLREMNDPNDRRYKYPFINCTNCGPRFSIIEDIPYDRPKTSMKVFPMCEKCEKEYNDPHDRRFHAQPVACFDCGPKLEF--VGGNCEE---------------------DEIKCVADALKRGKIVAIKGIGGFHLAVNALSDEAVFTLRSRKKRYGKPFAVMMKDINQVEKYCFVSDEEKKLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-VADGLDTLGVMLPYAPIHYLLMDQI-------D-FP--------IVMTSGNVSEEPICKDNEEALEKLKDIADAFLLNNRDIVNRIDDSVTS---FNG-GAE---------------------RIIRRARGYAPQPILL----K-KD----A-----KVNVLAVGGFYKNTFCITHGHYAFISHHIGDLDNEQAFEYYKEQIERYKRLFRVNPEVIAHDMHKGYLSTQYALS----CD-LPR---VEVQHHHAHIVSCMAEY-------NL--EEKVIGIAYDGTGYGTDGNIWGAEFLICDLK-DFLRVGHLEYKPLPGGELAIKKIYRTALGFIS-------KDINFY------KDFVEKFDSKEIDIILKQIERKINTPYVSSMGRFFDAAASLLGLRD--QVLFEGQGAMELESLIVE-----NDDF---------------YDFEV-----YRDR----EYIINPEVILHQLYEDYKKGI-DRKIIATKFHNSIVEFTHYLALELRKEFGINKVVLSGGSFQNRYLLKKLLAKLTASGFEAFSNSKVPCNDGGISLGQAVIANK--KLEG-------------------
	'Thermoanaerobacter italicus YP_003477422.1'                -------------------------------------MVRGRISKIQAKQIEIAGIVQGVGFRPFVFTLAKKYHLGGIVYNTSSGVYIEVEGGEENINNFLKELKDNPPPLAVIDEIEVKDLG---IR-GY--EDFKIISS--KEDGGFVPVSPDMGVCDDCLKEMNDPNDRRYRYPFINCTNCGPRFSIIEDIPYDRSKTSMKVFPMCKKCEKEYNDTNNRRFHAQPVACFDCGPKLEF--VGGSCKE---------------------DEIKCAVAALKKGKIVAIKGIGGFHLAVNALDEKAVSNLRIRKERYGKPFAVMMKDIKQVEEYCIVGEEEKKLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-VADGLDTLGVMLPYAPIHYLLMEEI-------N-FP--------IVMTSGNVSEEPLCKDNKEALEKLKDIADVFLLNNRDIVNRIDDSVTS---FNG-GAE---------------------RIIRRARGYAPQPILL----K-KD----A-----KVNVLAVGGFYKNTFCLTKGHYAFVSHHIGDLDNEKTFEYYKDQIERYKRLFRVTPQVIAYDMHKGYLSTQYALT----LD-LPR---IEVQHHHAHIASCMAEY-------NL--EEKVIGIAYDGTGYGADGNIWGAEFLICDLK-DFLRVGHLEYKPLPGGELAIKKIYRTALGFIS-------KDINFY------RDFVGKFDSKEVDLILKQIEKKINTPYVSSMGRFFDAAVSLIGIRD--QVLFEGQGAMELESLIVE-----DNDF---------------YDFEV-----YRDE----EYIIDPEVILRQLYEDYKNGV-DRRVIATKFHNSIVEFTCYLALKLRKEFGINKVVLSGGSFQNRYLLKKLLTRFTASGFEAYSNSKVPCNDGGISLGQAVIAGK--KLEG-------------------
	'Thermoanaerobacter mathranii YP_003677318.1'               -------------------------------------MVRGRISKIQAKQIEIAGIVQGVGFRPFVFTLAKKYHLGGIVYNTSSGVYIEVEGGEENINNFLKELKDNPPPLAVIDEIEVKDLG---IR-GY--EDFKIISS--KEDGGFVPVSPDMGVCDDCLKEMNDPNDRRYRYPFINCTNCGPRFSIIEDIPYDRSKTSMKVFPMCEKCEKEYNDPNNRRFHAQPVACFDCGPKLEF--VGGSCKE---------------------DEIKCAAAALKKGKIVAIKGIGGFHLAVNALDEKAVSSLRIRKERYGKPFAVMMKDIKQVEEYCIVGEEEKKLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-VADGLDTLGVMLPYAPIHYLLMEEI-------N-FP--------IVMTSGNVSEEPLCKDNKEALEKLKDIADVFLLNNRDIVNRIDDSVTS---FNG-GAE---------------------RIIRRARGYAPQPILL----K-KD----A-----KVNVLAVGGFYKNTFCLTKGHYAFVSHHIGDLDNEKTFEYYKEQIERYKRLFRVTPQVIAHDMHKGYLSTQYALT----LD-LPS---IEVQHHHAHIASCMAEY-------NL--EEKVIGIAYDGTGYGVDGNIWGAEFLICDLK-DFLRVGHLEYKPLPGGELAIKKIYRTALGFIS-------KDINFY------RDFVGKFDSKEVDLILKQIEKKINTPYVSSMGRFFDAAVSLIGIRD--QVLFEGQGAMELESLIVE-----DNDF---------------YDFEV-----YRDE----EYIIDPEVILRQLYEDYKNGV-DRRVIATKFHNSIVEFTFYLALKLRKEFGINKVVLSGGSFQNRYLLKKLLTRLTASGFEAYSNSKVPCNDGGISLGQAVIAGK--KLEG-------------------
	'Thermoanaerobacterium saccharolyticum YP_006391306.1'      -------------------------------------MAEKEIQRIRARQINIKGIVQGVGFRPFVYNLALKHSLSGIVYNTSSGLYINVEGYEDDIDAFLSELKENPPKLSKIDEVFVEDCD---VV-GY--KGFSIKSS--KADEGFVPISPDMGVCDECVSEMMDEKNRRYNYPFINCTNCGPRFSIIEDIPYDRPKTSMKKFPMCKLCKDEYENPLDRRFHAQPVACYDCGPSLKY--VGESTNF---------------------DPIMAIAEDLRNGKIVAIKGIGGFHLAVNALSKDAVLRLRERKNRYGKPLALMMKDVEDVKRYCHVSPEEIELLNSQRRPIVLLK-------------------KK-Y----E----------FEG--VSDGLDSVGVMLPYAPIHYLLFKYI-------D-FP--------VVMTSGNISEEPLCKDNDEALKRLKGIADSFLLNDRDIVNRIDDTVTS---WKG-KSE---------------------RVIRRSRGYAPEPMVF----K-MD----------FKPILAVGGYYKNTFCLTKGNYVFLSHHIGDLDNSKTYMYYVEEIKKYMRLFKVQPQFVACDMHQGYLSTQFAKT----LG-LPV---IYTQHHHAHIVSCMAEY-------GI--EDKVIGFSYDGTGYGLDGNVWGAEFLIADLK-DFVRAGHIKYNPLPGGELAIKRIYRTAIGFIN-------EDMIFY------KDYLKRFDAKELEIIKAQIDKKINAPLVSSMGRLFDAVASLIGVKD--TVIYEGQAAMELESIIEK-----DQSY---------------YDFTV-----SSDD----QYVVDTSDILRQVYSDYKKGV-NKGIISARFHNTIVEFTAYVALKLGEKYNIDKVVLSGGSFQNKYLLENIIDRLSKEGFSVYSNSKIPCNDGGISLGQAVIANY--RMEV-------------------
	'Thermoanaerobacterium thermosaccharolyticum YP_003850798.1' -------------------------------------MAERDLQSIYAKQINIKGIVQGVGFRPFVYNLAQKYNLHGIVFNTSSGLYIKIEGNDKNINSFIYELKANPPKLSKIDEVLIESCD---VE-GY--RDFSIKLS--QKDDGFVPISPDMGVCDDCVNEMMDENNRRYRYPFINCTNCGPRFSIIEDIPYDRPKTSMKKFPMCDLCKGEYTNPLDRRFHAQPVACFDCGPSLNY--VGPNAND---------------------DPIKAVAEDLRDGKIVAIKGIGGYHLAVNALSRDAVFRLRERKNRYGKPLALMMKDIDCVKKFCYLSDDEMELLNSQRRPIVLLK-------------------KK-H---------------KFEG-ISDGLDSVGVMLPYTPIHYLLFEFI-------D-FP--------IVMTSGNISEEPLCKDNEEALKRLKGIADSFLLNNRDIVNRIDDTVTS---YKA-KRE---------------------RVIRRARGYAPQPILF----K-DN----------LKSILAVGGYYKNTFCLTKGNYAFLSHHIGDLDNSKTYMYYMNEIKKYIKLFKAEPKYVACDMHPGYLSTQFAKS----LD-LPV---IYTQHHHAHIVSCMAEY-------GI--SDKVIGFAYDGTGYGPDGNVWGAEFLIADLK-DFVRAGHLKYNFLPGGELAIKKIYRTSIGFIK-------DDMSFY------GDYLKRFDPKEIEIINMQMDRKMNAPLVSSIGRFFDAVTSLIGLED--VVKYEGQAAMELESIIES-----DLSH---------------YDYSI-----SNVD----GYIVDTSNILRQVYSDYLKGI-SKGIISARFHNTIVEFTVDIALRLRENYKINKVVLSGGSFQNKYLLENITDKLLKEGFSVYSNSMVPCNDGGIALGQAVIANY--KLEV-------------------
	'Thermoanaerobacterium thermosaccharolyticum YP_007297556.1' -------------------------------------MAERDLQSIYAKQINIKGIVQGVGFRPFVYNLAQKYNLHGIVFNTSSGLYIKIEGNDKNINSFIYELKANPPKLSKIDEVLIESCD---VE-GY--RDFSIKLS--QKDDGFVPISPDMGVCDDCVNEMMDENNRRYRYPFINCTNCGPRFSIIEDIPYDRPKTSMKKFPMCDLCKGEYTNPLDRRFHAQPVACFDCGPSLNY--VGPNAND---------------------DPIKAVAEDLRNGKIVAIKGIGGYHLAVNALSHDAVFRLRERKNRYGKPLALMMKDIDCVKKFCYLSDDEMELLNSQRRPIVLLK-------------------KK-Y----K----------FEG--ISDGLNSVGVMLPYTPIHYLLFEFI-------D-FP--------IVMTSGNISEEPLCKDNEEALKRLKGIADSFLLNNRDIVNRIDDTVTS---YKA-KRE---------------------RVIRRARGYAPQPILF----K-DK----------LKSILAVGGYYKNTFCLTKGNYAFLSHHIGDLDNSKTYMYYMNEIKKYIKLFKAEPKYVACDMHPGYLSTQFAKS----LD-LPV---IYTQHHHAHIVSCMAEY-------GI--EDKVIGFSYDGTGYGLDGNVWGAEFLIADLK-DFVRAGHVKYNPLPGGELAIKRIYRTAIGFIN-------EDMIFY------KDYLKRFDAKELEIIKAQIDKKINAPLVSSMGRLFDAVASLIDIED--TVHYEGQAAMELESIIES-----DSSY---------------YSFTV-----SSGD----EYVVDTSDILMQVYSDYRKGV-NKGIISARFHNTIVEFTVDIALRLRENYKIDKVVLSGGSFQNKYLLENITDKLLKEGFSVYSNSMVPCNDGGIALGQAVIANY--KLEV-------------------
	'Thermoanaerobacterium xylanolyticum YP_004469849.1'        -------------------------------------MAEREIRRIRARQINIKGIVQGVGFRPFVYNLALRYSLSGIVYNTSSGVSINVEGYEDDIDAFLSELKENPPKLSKIDEISIEDCD---VV-GY--KGFSIKSS--KADEGFVPISPDMGVCDECVSEMMDEKNRRYNYPFINCTNCGPRFSIIEDIPYDRPKTSMKKFPMCKLCNDEYENPLDRRFHAQPVACYDCGPSLKY--VGESTNI---------------------DPIMAVAEDLRKGKIVAIKGIGGFHLAVNALSHEAVLRLRDRKNRYGKPLALMMKDVEDVKRHCHVSPEEIELLNSQRRPIVLLK-------------------KK-Y----E----------FEG--VSDGLDSVGVMLPYAPIHYLLFKYI-------D-FP--------VVMTSGNISEEPLCKDNDEALKRLKDIADSFLLNDRDIVNRIDDTVTS---WKG-KSE---------------------RVIRRSRGYAPEPMVF----K-MD----------FKPILAVGGYYKNTFCLTKGNYAFLSHHIGDLDSSKTYMYYVEEIKKYMRLFKVQPQFVACDMHQGYLSTQFAKT----LG-LPV---IYTQHHHAHVVSCMAEY-------GI--EDKVIGFSYDGTGYGLDGNVWGAEFLIADLK-DFVRAGHVKYNPLPGGELAIKRIYRTAIGFIN-------EDMNFY------KDYLKRFDAKELEIIKAQIDKKINAPLVSSMGRLFDAVASLIGVKD--TVIYEGQAAMELESIIEK-----DQSY---------------YDFTV-----SSDD----QYVVDTSDILRQVYSDYKKGV-SKGIISARFHNTIVEFTAYVALKLGEKYNIDKVVLSGGSFQNKYLLENIIDRLSKEGFLVYSNSKIPCNDGGISLGQAVIANY--RMEV-------------------

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  992;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  13;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  992;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  992;
END;

BEGIN TREES;
	Title 'Trees from "hypF.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 'Caldanaerobacter subterraneus tengcongensis_3VTH',
[1] 		2 'Caldanaerobacter subterraneus tengcongensis_NP_621831.1',
[2] 		3 'Caldanaerobacter subterraneus pacificus_CDSM653_0109',
[3] 		4 'Thermoanaerobacter WP_004399983.1',
[4] 		5 'Thermoanaerobacter siderophilus WP_006569907.1',
[5] 		6 'Thermoanaerobacter ethanolicus WP_003868945.1',
[6] 		7 'Thermoanaerobacter wiegelii YP_004818936.1',
[7] 		8 'Thermoanaerobacter italicus YP_003477422.1',
[8] 		9 'Thermoanaerobacter mathranii YP_003677318.1',
[9] 		10 'Thermoanaerobacterium saccharolyticum YP_006391306.1',
[10] 		11 'Thermoanaerobacterium thermosaccharolyticum YP_003850798.1',
[11] 		12 'Thermoanaerobacterium thermosaccharolyticum YP_007297556.1',
[12] 		13 'Thermoanaerobacterium xylanolyticum YP_004469849.1';
	TREE tree_1 = (((13:0.021996,10:0.006469)0.9980:0.077105,(12:0.006554,11:0.051163)0.9950:0.064105)1.0000:0.211489,((((9:0.000001,8:0.011297)1.0000:0.064058,((7:0.002771,4:0.001383)0.9100:0.004229,5:0.002723)1.0000:0.037698)0.6220:0.018939,6:0.057305)0.9960:0.075843,(3:0.000001,(2:0.000001,1:0.000001)0.0000:0.000001)1.0000:0.105206)0.9960:0.101216)root;

END;


Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1440597998658;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 4054501206631491416;
			tell It;
				attachments ;
			endTell;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 3107595185473926425;
			mqVersion 304;
			checksumv 0 3 259671270 null  getNumChars 992 numChars 992 getNumTaxa 13 numTaxa 13   short false   bits 1048575   states 1048575   sumSquaresStatesOnly 1.51207545127643E14 sumSquares 1.51207545127643E14 longCompressibleToShort false usingShortMatrix false   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 234;
			setPopoutState 300;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 610;
			setLocation 51 24;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			showTaxa #4054501206631491416 #mesquite.lists.TaxonList.TaxonList;
			tell It;
				setTaxa #4054501206631491416;
				getWindow;
				tell It;
					newAssistant  #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 466 538;
					setLocation 51 24;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
						setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam;
					endTell;
				endTell;
				showWindow;
				getEmployee #mesquite.lists.ColorTaxon.ColorTaxon;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel;
				tell It;
					togglePanel off;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord;
		tell It;
			makeTreeWindow #4054501206631491416  #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker;
			tell It;
				suppressEPCResponse;
				setTreeSource  #mesquite.trees.StoredTrees.StoredTrees;
				tell It;
					setTreeBlock 1;
					toggleUseWeights off;
				endTell;
				setAssignedID 3991.1440597993630.4628224796403817337;
				getTreeWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 466 538;
					setLocation 51 24;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setActive;
					getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator;
				tell It;
					suppress;
					setTreeDrawer  #mesquite.trees.SquareLineTree.SquareLineTree;
					tell It;
						setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard;
						tell It;
							branchLengthsToggle off;
							toggleScale on;
							toggleBroadScale off;
							toggleCenter on;
							toggleEven on;
							setFixedTaxonDistance 0;
						endTell;
						setEdgeWidth 4;
						showEdgeLines on;
						orientUp;
					endTell;
					setBackground White;
					setBranchColor Black;
					showNodeNumbers off;
					showBranchColors on;
					labelBranchLengths off;
					centerBrLenLabels on;
					showBrLensUnspecified on;
					showBrLenLabelsOnTerminals on;
					setBrLenLabelColor 0 0 255;
					setNumBrLenDecimals 6;
					desuppress;
					getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames;
					tell It;
						setColor Black;
						toggleColorPartition off;
						toggleColorAssigned on;
						toggleShadePartition off;
						toggleShowFootnotes on;
						toggleNodeLabels on;
						toggleCenterNodeNames off;
						toggleShowNames on;
						namesAngle ?;
					endTell;
				endTell;
					setTreeNumber 1;
					setDrawingSizeMode 0;
					toggleLegendFloat on;
					scale 0;
					toggleTextOnTree off;
					togglePrintName on;
					showWindow;
				endTell;
				desuppressEPCResponse;
				getEmployee #mesquite.trees.ColorBranches.ColorBranches;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.ornamental.BranchNotes.BranchNotes;
				tell It;
					setAlwaysOn off;
				endTell;
				getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition;
				tell It;
					colorByPartition off;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles;
				tell It;
					setOn on;
					setDigits 4;
					writeAsPercentage off;
					toggleCentred off;
					toggleHorizontal on;
					toggleWhiteEdges on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings;
				tell It;
					setOn on;
					toggleCentred on;
					toggleHorizontal on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #3107595185473926425 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 466 538;
					setLocation 51 24;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
					colorCells  #mesquite.charMatrices.ColorByState.ColorByState;
				tell It;
					setStateLimit 9;
					toggleUniformMaximum on;
				endTell;
					colorRowNames  #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor;
					colorColumnNames  #mesquite.charMatrices.CharGroupColor.CharGroupColor;
					colorText  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleShowTaxonNames on;
					toggleTight off;
					toggleThinRows off;
					toggleShowChanges off;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleAutoWCharNames off;
					toggleAutoTaxonNames off;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					toggleBirdsEye off;
					toggleShowPaleGrid off;
					toggleShowPaleCellColors off;
					toggleShowPaleExcluded off;
					togglePaleInapplicable on;
					toggleShowBoldCellText off;
					toggleAllowAutosize off;
					toggleColorsPanel off;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				showWindow;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
				tell It;
					autotabOff;
				endTell;
				getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
				tell It;
					gapCosts 8 3 2 2;
					subCosts  5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5;
				endTell;
				getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;