NEXUS
[File created by TreeBASE:  7/26/07  20:58:34]
[Matrix accession#: M850]

BEGIN TAXA;
	TITLE M850;
	DIMENSIONS  NTAX=11;
	TAXLABELS
		Xenocylindrocladium_guianense_STEU_3397	Xenocylindrocladium_guianense_STEU_3396	Xenocylindrocladium_subverticillatum_STEU_3397	Xenocylindrocladium_serpens_STEU_1144	Gliocladiopsis_tenuis_IMI_300597	Cylindrocladium_scoparium_ATCC_46300	Cylindrocladium_floridanum_ATCC_18882	Curvicladium_cigneum_STEU_1595	Cylindrocladiella_microcylindrica_ATCC_38571	Cylindrocladiella_infestans_ATCC_44816	Fusarium_subglutinans_NRRL_22016
	;
END;

BEGIN CHARACTERS;
	TITLE M850;
	DIMENSIONS NCHAR=538;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Xenocylindrocladium_guianense_STEU_3397              ??CATTACCGAGTTTACAACTCCCAAACCCAATGTGAACTATACCTGTT-CGTTCCCTCGGCGG-T--GTCCGGCGC---TTCGGCG--AAGGCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT--TT-AGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAATTCCTCTTTTGGAATTGGTGTTGGGGATCGGCA-AGGCGTCCTTCGGGC-CGC-GCCGTCCCCCAAATTTAGTGGCGGTCTCGCTGTAGCTTCCTCTGCGTAGTAATACA--CCTCGCTCTGGAAACGCGGCGCGGCCAAGCCGTTAAACCCCCAACTTTTTTTT--GTTTGACCTCGAATCAGGTAGGACTACCCGCTGAACTT
		Xenocylindrocladium_guianense_STEU_3396              ???ATTACCGAGTTTACAACTCCCAAACCCAATGTGAACTATACCTGTT-CGTTCCCTCGGCGG-T--GTCCGGCGC---TTCGGCG--AAGGCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT--TT-AGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAATTCCTCTTTTGGAATTGGTGTTGGGGATCGGCA-AGGCGTCCTTCGGGC-CGC-GCCGTCCCCCAAATTTAGTGGCGGTCTCGCTGTAGCTTCCTCTGCGTAGTAATACA--CCTCGCTCTGGAAACGCGGCGCGGCCAAGCCGTTAAACCCCCAACTTTTTTTT--GTTTGACCTCGAATCAGGTAGGACTACCCGCTGAACTT
		Xenocylindrocladium_subverticillatum_STEU_3397       ??CATTACCGAGTTTACAACTCCCAAACCCCATGTGAACTATACCTGTT-CGTTCCCTCGGCGG-C--GTTT-CTCC---CGAAAGG--GAGGCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT--TT-AGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAATTCCTCTTTTGGGATTGGTGTTGGGGATCGGCA-AGGCGACCTTCGGGC-CGC-GCCGTCCCCCAAATTTAGTGGCGGTCTCGCTGTAGCTTCCTCTGCGTAGTAATACA--CCTCGCTCTGGAGTCTTGGCGCGGCCACGCCGTTAAACCCCCAACTTTTTTTTT-GTTTGACCTCGAATCAGGTAGGACTACCCGCTGAACTT
		Xenocylindrocladium_serpens_STEU_1144                ??CATTACCGAGTTTACAACTCCCAAACCCAATGTGAACTATACCTGTT-CGTTCCCTCGGCGG-T--GTTCGCTGC---TTCGGCA--GAGGCCCGCCAGAGGACCCAACAAACTCTTTTGAATCT--TT-AGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGACGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAATTCCTCTTTTGGGATTGGTGTTGGGGATCGGCA-AGGCGACCTTCGGGC-CGC-GCCGTCCCCTAAATCTAGTGGCGGTCTCGCTGTAGCTTCCTCTGCGTAGTAATACA--CCTCGCTCTGGAAACGCGGCGCGGCCAAGCCGTTAAACCCCCAACTTTTTTTTT-GTTTGACCTCGAATCAGGTAGGACTACCCGCTGAACTT
		Gliocladiopsis_tenuis_IMI_300597                     ?????TACCGAGTTTACAACTCCCAAACCCC-TGTGAACT-TACC-TTTATGTTGCCTCGGCGG-C--GTCC---GC---TTCGGCG-----GCCCGCCAGAGGACCCAA-ACTCTTGT---ATTTGAATTGAGTATTCTCTGAGTGATAC-AAGCAATAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCC----GGGCTTGGTGTTGGAGATCGGCAACCGCCCCCTCGTGGGGTG-CGCCGCCTCCCAAATCTAGTGGCGGTCTCGCTGTAGCTTCCTCTGCGTAGTAATTCA--CCTCGCTCTGGAAC-GCGGCGCGGCCAAGCCGTTAAACCCCCCACTTCTGAA---GGTTGACCTCGGATCAGGTAGGACTACCCGCTGAACTT
		Cylindrocladium_scoparium_ATCC_46300                 ???????CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG-T--GTCCG-----------GCA--ACGGCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT--TTCAGTATCTTCTGAGTAAAAAAAAACAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCT-------GCTTGGTGTTGGGGATCGGCA-AGGCGTCCTCCGGGT-CGC-GCCGTCCCCCAAATATAGTGGCGGTCTCGCTGTAGCTTCCTCTGCGTAGTAATACA--CCTCGCTCTGGAGTCTCGGTGCGGCCACGCCGTAAAACCCCCAACTTTTTTCTG???????????????????????????????????????
		Cylindrocladium_floridanum_ATCC_18882                ??CATTACCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG-T--GTCCG-----------GCA--ACGGCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT--TTCAGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCACCTTCGGGAGCTTGGTGTTGGGGATCGGCA-GGGCGTCCTTCGGGT-CGC-GCCGTCCCCCAAATTTAGTGGCGGTCTCGCTGTAGCTTCCTCTGCGTAGTAATACA--CCTCGCTCTGGAGTCTCGGTGCGACCACGCCGTAAAACCCCCAACTTTTTCT--GGTTGACCTCGAATCAGGTAGGACTACCCGCT???????
		Curvicladium_cigneum_STEU_1595                       ??CATTACCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTCAAACGTTCCCTCGGCGG-T--GTCCCGCGC---TCCGGCA--AGGGCCCGCCAGAGGACCCAACAAACTCTTTGTATTTCAATCTAGTATCTTCTGAGTGAAAACAAACAATAAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CTCTTCTGG-CTTGGTGTTGGGGATCGGCACGGGCGCCCTCAGGGG-CGCTGCCGTCCCCCAAATCTAGTGGCGGTCTCGCTGTAGCCAACTCTGCGTAGTAATACA--CCTCGCACTGGAAGCTCGGCGCGGCCAAGCCGTTAAACCCCCAACTTTTTTT?????????????????????????????????????????
		Cylindrocladiella_microcylindrica_ATCC_38571         ??CATTACAGAGTTTACAACTCCCAAACCCC-TGTGAACT-TACC-ATGTCGTTGCCTCGGCGG-T--GT--CTTGC---TTCGGCG--A--GCCCGCCAGAGGACCCAACAAACTCTT---GTTTT--TTTAGTATTATCTGAGTGACAA-GTTTAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAACCCCC----GGGTTTGGTGTTGGAGATCGACATGAAGCCCTTCTGGGTGTGAAGTCGTCTCCCAAATATAGTGGCGGTCTCGCTGTAGCTTCCTATGCGTAGTAGCACA--CCTCGCACTGGAAA-GCAGCAAGCCCACGCCGTTAAACCCCCCACTTT---CTGAGTTTGACCTCGAATCAGGTAGGATTACCCGCTG?????
		Cylindrocladiella_infestans_ATCC_44816               ??CATTACAGAGTTTACAACTCCCAAACCCC-TGTGAACA-TACC-A-GTCGTTGCCTCGGCGG-T--GT--CTTGC---TTCGGCG--A--GCCCGCCAGAGGACCCAACAAACTCTT---GTTTT--TTTAGTATTATCTGAGTGACAA-GTTTAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAACCCCC----GGGTTTGGTGTTGGAGATCGGCATGA-GTCCTTCGGGGCG--ACGCCGTCTCCCAAATATAGTGGCGGTCTCGCTGTAGCTTCCTATGCGTAGTAGCACA--CCTCGCACTGGAAA-GCAGCGCGGCCACGCCGTTAAACCCCCAACTTTT--CTGAGTTTGACCTCGAATCAGGTAGGATTACCCGCTGAACTT
		Fusarium_subglutinans_NRRL_22016                     ATCATTACCGAGTTTACAACTCCCAAACCCC-TGTGAAC-ATACCAATT--GTTGCCTCGGCGGATCAGCCCGCTCCCGGTAAAACGGGACGGCCCGCCAGAGGACCCC-TAAACTCTGTT---TCTA--TATGTAACTTCTGAGTAAAACCATA-AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCC-------AGCTTGGTGTTGGGACTCG---CGAG-----TCAAATCGCG------TTCCCCAAATTGATTGGCGGTCACGTCG-AGCTTCCATAGCGTAGTAGTAAAACCCTCGTTACTGGTAATCGTCGCGGCCACGCCGTTAAACCCC-AACTTCTGAATG---TTGACCTCGGATCAGGTAGGAATACCCGCTGAAC??
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 538 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;