NEXUS
[File created by TreeBASE:  7/26/07  20:58:12]
[Matrix accession#: M756]

BEGIN TAXA;
	TITLE M756;
	DIMENSIONS  NTAX=24;
	TAXLABELS
		Chlorella_ellipsoidea	'P3-2'	Pteridium_aquilinum	Lilium_parryi	Ginkgo_biloba	Cicer_reticulatum	Phytophthora_ilicis	Achlya_bisexualis	Glomus_mosseae	Lentinula_edodes	Xylaria_hypoxylon	Gelasinospora_nigeriensis	'P2-6'	Glomerella_graminicola	'P4-5'	Mycosphaerella_graminicola	Eurotium_rubrum	Pleurotus_pulmonarius	'P1-9'	Tremella_foliacea	Puccinia_caricina	Morchella_crassipes	'P4-7'	'P4-4'
	;
END;

BEGIN CHARACTERS;
	TITLE M756;
	DIMENSIONS NCHAR=160;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Chlorella_ellipsoidea            CAACTCTCAACAACGGATATCTTGGCTCCCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCATATTGCGCTCGAGACCT--CGGTCAAGAGCATGTCTGGCTCAGCGTCGGCT
		'P3-2'                           AAACCCCTAACAACGGATGTCTTGGCTCTCGCAACGAGGAAGAACGCAGCGAAGTGCGATATGTAGTGTGAATTGCAGAATTACGTGAATCATCGAATCTTTGAACGCATATGGCACCCGAGACCT--CGGTCGAGGGTATGTCTGCCTAAGAGTCGCCG
		Pteridium_aquilinum              TGACGCTCGGCAACGGATATCTTGGCTCTTGCAACGATGAAGAACGCAGCGAAATGCGATACGTGGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCTT---GTCCGAGGGCACGCCTGCCTGAGCGTCTCAC
		Lilium_parryi                    CGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCTTTCGGTTGAGGGCACGCCTGCCTGGGCGTCACGC
		Ginkgo_biloba                    CGACTCTCGGCAACGGATATCTTGGCTCTTACCACGATGAAGAACGTAACGAAATGCGATATTTAGTGTGAATTGTAGAATCCCATGAATCATCAAGTCTTTGAACGCAAGTTGTGGCCGAGGCT----GGT-GAGGGCACATCTACTTTGGCATTGCAT
		Cicer_reticulatum                TGACTCTCGGCAACGGATATCTAGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGCCATTAGGTTGAGGGCACGTCTGCCTGGGTGTCACAT
		Phytophthora_ilicis              CAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTT-AGTCCTGGGAGTATGCCTGTATCAGTGTCCGTA
		Achlya_bisexualis                CAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGGAGGACGCTGCGGACTGCGATACGTAATGCGATTTGAAGAAT-CAGTGAGTCACCGAAATTTGGAACGCATATTGAACTTGCGGGTT-AGCCCTGGGAGTATGTTTGTTCCAGTGTCCGTA
		Glomus_mosseae                   TCACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCATAATTTTGTGAATCATCGAATCTTTGAACGCAAATTGCACTCCCTGGT--ATTCCGGGGAGTATGCCTGTTTGAGGGTCGTTA
		Lentinula_edodes                 CAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTCTGGT--ATTCCG-GAGGCATGCCTGTTTGAGTGTCATTA
		Xylaria_hypoxylon                AAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGT--ATTCTAGTGGGCATGCCTGTTCGAGCGTCATTT
		Gelasinospora_nigeriensis        AAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCTCGCCAGT--ATTCTGGCGAGCATGCCTGTTCGAGCGTCATTT
		'P2-6'                           AAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGC-AAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGC--ATTCTGGCGGGCATGCCTGTTCGAGCGTCATTT
		Glomerella_graminicola           AAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGC--ATTCTGGCGGGCATGCCTGTTCGAGCGTCATTT
		'P4-5'                           AAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGT--ATTCCGCGGGGCATGCCTGTTCGAGCGTCATTT
		Mycosphaerella_graminicola       AAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGT--ATTCCGGGGGGCATGCCCGTTCGAGCGTCATTA
		Eurotium_rubrum                  AAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAATTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGT--ATTCCGGGGGGCATGCCTGTCCGAGCGTCATTG
		Pleurotus_pulmonarius            CAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGT--ATTCCGAGGGGCATGCCTGTTTGAGTGTCATTA
		'P1-9'                           TAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGT--ATTCCTTGGAGCATGCCTGTTTGAGTGTCATGA
		Tremella_foliacea                AAACTTTTAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCCCTTTGGT--ATTCCGAAGGGCATGCCTGTTTGAGTGTCATGA
		Puccinia_caricina                TAACTTTTAACAATGGATCTCTTGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATCCAGTGAATCATTGAATCTTTGAACGCATCTTGCACCTTTTGGT--ATTCCAAAAGGTACACCTGTTTGAGTGTCATGA
		Morchella_crassipes              AAACTTTCAACAACGGATCTCTTGGTTCCCACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGT--ATTCCGGAGGGCATGCCTGTTCGAGCGTCATAA
		'P4-7'                           AAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGAACATTGCGCCCTTTGGC--ATTCCGAGGGGCATGCCCGTTCGAGCGTCATTA
		'P4-4'                           AAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGGCCTTTGGC--ATTCCGAAGGGCATGCCTGTTCGAGCGTCATTA
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 160 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;