NEXUS
[File created by TreeBASE:  7/26/07  20:58:12]
[Matrix accession#: M758]

BEGIN TAXA;
	TITLE M758;
	DIMENSIONS  NTAX=21;
	TAXLABELS
		Colletotrichum_coccodes	Colletotrichum_trichellum	Colletotrichum_dematium	Colletotrichum_destructivum	Colletotrichum_linicola	Colletotrichum_capsici	Colletotrichum_musae	Colletotrichum_fragariae	Colletotrichum_kahawae	Colletotrichum_fuscum	Glomerella_cingulata	'P2-6'	Colletotrichum_sublineolum	Glomerella_graminicola	Colletotrichum_acutatum	Colletotrichum_trifolii	Colletotrichum_orbiculare	Colletotrichum_lindemuthianum	Hypocrea_rufa	Elsino_australis	Saccharomyces_cerevisiae
	;
END;

BEGIN CHARACTERS;
	TITLE M758;
	DIMENSIONS NCHAR=211;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Colletotrichum_coccodes             CTGAGTT-ACCGCTCTATAACCCTTTGTGAAC-ATACCT--AACTGTTGCTTCGGCGGGC-AGGGGGT---GCCGCC--TGCGGAC-----CCCCCTCCCGGCCCTGCCCTC--AC---------GGGCGGAGCGCCCGCCGGAGG-ATA--CCAAA----CTCT-ATTT---TAACGACGTTTCTTCTGAGTGGCACAAGCAAATAATTA
		Colletotrichum_trichellum           CTGAGTT-ACCGCTCTACAACCCTTTGTGAAC-ATACCT--AACTGTTGCTTCGGCGGGC-AGGAGG----TCCCCC--CGGGGA------CCCCCTCCCGGCCCCGCCCTC--GC---------AGGCGGAGCGCCCGCCGGAGG-TCA--CCAAACTC-TTAT-TTTT---TAGCGACGTTTCTTCTGAGTGGCACAAGCAAATAATAA
		Colletotrichum_dematium             CTGAGTT-ACCGCTCTACAACCCTTTGTGAAC-ATACCT-TA-CTGTTGCTTCGGCGGGC-AG-------AGTCCCC-TCGGGGA-------CCCCTCCCGGCCCGTCCCTC--GC---------GGACGGAGCGCCCGCCGGAGG-ATA--CCAAA----CTCT-ATTT---TAACGACGTTTCTTCTGAGTGGCACAAGCAAATAATTA
		Colletotrichum_destructivum         CTGAGTT-ACCGCTCTACAACCCTTTGTGAAC-ATACCT-TAACTGTTGCTTCGGCGGGC-AGGAGGACAACCCCCC-TCGGGGGG-CGGTCCCCCTCCCGGCCGCGCCCTC--AC---------GGGCGTGGCGCCCGCCGGAGG-ATA--CCAAAA---CTCT-ATTT---TAACGACGTTTCTTCTGAGTGGCACAAGCAAATAATTA
		Colletotrichum_linicola             CTGAGTT-ACCGCTCTACAACCCTTTGTGAAC-ATACCT-TAACTGTTGCTTCGGCGGGC-AGGAGGACAACCCCCCCTCGGGGGGGCGGTCCCCCTCCCGGCCGCGCCCTC--AC---------GGGCGTGGCGCCCGCCGGAGG-ATA--CCAAA----CTCT-ATTT---TAACGACGTTTCTTCTGAGTGGCACAAGCAAATAATTA
		Colletotrichum_capsici              CTGAGTT-ACCGCTCATCAACCCTTTGTGAAC-ATACCT-TAACTGTTGCTTCGGCGGGT-AGGCG-----TCCCCTAAAAAGGA-------CGTCTCCCGGCCCTCTCCCGTCC--------GCGGGTGGGGCGCCCGCCGGAGG-ATAA-CCAAA----CTCT-GATT---TAACGACGTTTCTTCTGAGTGACACAAGCAAATAATCA
		Colletotrichum_musae                CTGAGTT-TACGCTCTGCAACCCTTTGTGAAC-ATACCTATAACTGTTGCTTCGGCGGGT-AGG-G-----TCCCCGT-----GA-------CC-CTCCCGGCCCCCCGCCCCCG-------GG-GCGTCGG-CGCCCGCCGGAGG-ATAA-CCAAA----CTCT-GATT---TAACGACGTTTCTTCTGAGTGGTACAAGCAAATAATCA
		Colletotrichum_fragariae            CTGAGTT-TACGCTCTACAACCCTTTGTGAAC-ATACCTACAACTGTTGCTTCGGCGGGT-AGG-G-----TCCCCGT-----GA-------CC-CTCCCGGCCTCCCGCCCCCCC------GGCGGGTCGG-CGCCCGCCGGAGG-ATAA-CCAAA----CTCT-GATT---TAACGACGTTTCTTCTGAGTGGTACAAGCAAATAATCA
		Colletotrichum_kahawae              CTGAGTT-TACGCTCTACAACCCTTTGTGAAC-ATACCTATAACTGTTGCTTCGGCGGGC-AGG-G-----TCTCCGT-----GA-------CC-CTCCCGGCCTCCCGCCCCCG-------GGCGGGTCGG-CGCCCGCCGGAGG-ATAA-CCAAA----CTCT-GATT---TAACGACGTTTCTTCTGAGTGGTACAAGCAAATAATCA
		Colletotrichum_fuscum               CTGAGTT-TACGCTCTACAACCCTTTGTGAAC-ATACCTATAACTGTTGCTTCGGCGGGT-AGG-G-----TCTCCGC-----GA-------CC-CTCCCGGCCTCCCGCCTCCG-------CG-GGGTCGG-CGCCCGCCGGAGG-ATAA-CCAAA----CTCT-GATT---TAACGACGTTTCTTCTGAGTGGTACAAGCAAATAATCA
		Glomerella_cingulata                CTGAGTT-TACGCTCTATAACCCTTTGTGAAC-ATACCTATAACTGTTGCTTCGGCGGGT-AGG-G-----TCTCCGC-----GA-------CC-CTCCCGGCCTCCCGCCTCCG-------GGCGGGTCGG-CGCCCGCCGGAGG-ATAA-CCAAA----CTCT-GATT---TAACGACGTTTCTTCTGAGTGGTACAAGCAAATAATCA
		'P2-6'                              CTGAGTT-TACGCTCTACAACCCTTTGTGAAC-ATACCTATAACTGTTGCTTCGGCGGGT-AGG-G-----TCTCCGC-----GA-------CC-CTCCCGGCCTCCCGCCTCCG-------GGCGGGTCGG-CGCCCGCCGGAGG-ATAA-CCAAA----CTCT-GATT---TAACGACGTTTCTTCTGAGTGGTACAAGCAAATAATCA
		Colletotrichum_sublineolum          CTGAGTT-ACCGCTCTATAACCCTTTGTGAAC-ATACCT--AACTGTTGCTTCGGCGGGTTAGGGGG----TCCCTC--CGGGGA------CGCCCTCCCGCCGGCGCCCTCCTCCTCCGGGAGGGGTCGCGGCGCCCGCCGGAGG-ATAA-CCAAA----CTCT-GATT---TAACGACGTTTCTTCTGAGTGGCACAAGCAAATAATTA
		Glomerella_graminicola              TCGAGTT-ACCGCTCTACAACCCTTTGTGAAC-ATACCT--AACTGTTGCTTCGGCGGGC-AGGGGG----TCCCCC--CGGGGA------CGCCCTCCCGGCCCCGCCCCCCTAC-C----AGGGGACGTGGCGCCCGCCGGAGG-ATA--CCCAA----CTCT-ATTT---TAACGACGTTTCTTCTGAGTGGCACAAGCAAATAATTA
		Colletotrichum_acutatum             CTGAGTT-ACCGCTCTATAACCCTTTGTGAAC-GTACCT--AACCGTTGCTTCGGCGGGC-AGGGGA---AGCCTCTCGCGGGCCT------CCCCTCCCGGCGCCGGCCCCCACCAC-----GGGGACGGGGCGCCCGCCGGAGG-AAA--CCAAA----CTCT-ATTT---ACACGACGTCTCTTCTGAGTGGCACAAGCAAATAATTA
		Colletotrichum_trifolii             CTGAGTTTA-CGCTCCATAACCCTTTGTGAAC-ATACCT--AACCGTTGCTTCGGCGGGC-GGGAGG----TCCGCC-T-------------CCCC-CCCGGCCCCGCTCGC-----------------GGGGCGCCCGCCGGAGG-AAAACCCCAA----CTCTTATTT---TAACGACGTCTCTTCTGAGTGGCACAAGCAAATAATCA
		Colletotrichum_orbiculare           CTGAGTTTAACGCTCTATAACCCTTTGTGAAC-ATACCT--AACCGTTGCTTCGGCGGGC-GGGAGG----TCCGCC-T-------------CCCC-CCCGGCCCCGCTCGC-----------------GGGGAGCCCGCCGGAGG-AAAAACCCAA----CTCTTATTT---TAACGACGTCTCTTCTGAGTGGCACAAGCAAATAATCA
		Colletotrichum_lindemuthianum       CTGAGTTTA-CGCTCTATAACCCTTTGTGAAC-ATACCA--AACCGTTGCTTCGGCGGGC-GGGAGG----TCCGCC-T-------------CCCC-CC-GGCCCCGCTCGC-----------------GGGGCGCCCGCCGGAGG-AAAA-CCCAA----CTCT-ATTT---TAACGACGTCTCTTCTGAGTGGCACAAGCAAATAGTCA
		Hypocrea_rufa                       CCGAGTTTACAACTCCCAAACCCAATGTGAACCATACCA-AA-CTGTTGCCTCGGCGGG---G--------TCACGCC--------------CCGGGTGCGTCGCAGCCCCG-------------GAACCAGGCGCCCGCCGGAGGGACCAACCAAACTCTTTCTGTAGTCCCTCGCGGACGTTATTTTTACAGCTCTGAGCAAAAATTCA
		Elsino_australis                   CCGAAAGGA-GCCCGAACTCCCCACCCTTTGCTGTTGCG-AATCTGTTGCTTCGGCGGGCCCGC-------CCCCCCATCCCTGGG----GGGGCGGCCGGGCCTCACCGCCC-------------GGACAG-CGCCCGCCGGAGG----A-CCGAATCAACTCTGTTTTTAACCATAATGTCGGAGTACTTTTGTACAATCAAATTAAAA
		Saccharomyces_cerevisiae            TTTTGTTATAGGACTTAAAACCG-TT-T---CAATACAACACACTGTGGAGTTTTCATATCTTTGCAACTTTTTCTTT------------GGGCATTCGAGCAATCGGGGCCAGAG---------GTAACAAACACAAACAATTTTATTTATTCATTA--AATTT-TTGTCAAAAACAAGAATTTTCGTAACTGGAAATTTTAAAATATTA
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 211 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;