NEXUS
[File created by TreeBASE:  7/26/07  20:58:12]
[Matrix accession#: M759]

BEGIN TAXA;
	TITLE M759;
	DIMENSIONS  NTAX=11;
	TAXLABELS
		Colletotrichum_coccodes	Colletotrichum_acutatum	Colletotrichum_musae	Colletotrichum_fragariae	'P2-6'	Glomerella_cingulata	Glomerella_graminicola	Colletotrichum_orbiculare	Hypocrea_rufa	Elsino_australis	Saccharomyces_cerevisiae
	;
END;

BEGIN CHARACTERS;
	TITLE M759;
	DIMENSIONS NCHAR=171;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Colletotrichum_coccodes         AACCCTCAAGCTCTGCTTGGTGTTGGGG------CC-CTACGGTTGACGTAGGCCCTT---AAAGGTAGTGGCGGACCCTCTCGG-AGCCTCCTTTGCGTAGTAACTA--ACGTCTCGCACTGGG-ATTCGGAGGG-ACTCTTGCCGTAAAACCCCCAAATTTTTA-----
		Colletotrichum_acutatum         AACCCTCAAGCACCGCTTGGTTTTGGGG------CC-CCACGGCCGACGTGGGCCCTT---AAAGGTAGTGGCGGACCCTCCCGG-AGCCTCCTTTGCGTAGTAACTA--ACGTCTCGCACTGGG-ATCCGGAGGG-ACTCTTGCCGTTAAACCCCCAAATTTTTT-----
		Colletotrichum_musae            AACCCTCAAGCTCTGCTTGGTGTTGGGG------CC-CTACAGCACATGTAGGCCCTC---AAAGGTAGTGGCGGACCCTCCCGG-AGCCTCCTTTGCGTAGTAACTTT-ACGTCTCGCACTGGG-ATCCGGAGGG-ACTCTTGCCGTAAAACCCCCCAATTTTCC-----
		Colletotrichum_fragariae        AACCCTCAAGCTCTGCTTGGTGTTGGGG------CC-CTACAGCTGATGTAGGCCCTC---AAAGGTAGTGGCGGACCCTCCCGG-AGCCTCCTTTGCGTAGTAACTTT-ACGTCTCGCACTGGG-ATCCGGAGGG-ACTCTTGCCGTAAAACCCCCCAATTTTCC-----
		'P2-6'                          AACCCTCAAGCTCTGCTTGGTGTTGGGG------CC-CTACAGCTGATGTAGGCCCTC---AAAGGTAGTCGCGAACCCTCTCGGGAGCCTCCTTTGCGTAGTAACTTT-ACGTCTCGCACTGGGGATCCGGAGGG-ACTCTTGCCGTAAAACCCCC-AACTTTCCAAAGG
		Glomerella_cingulata            AACCCTCAAGCTCTGCTTGGTGTTGGG-------CC-CTACAGCTGATGTAGGCCCTC---AAAGGTAGTGGCGGACCCTCCCGG-AGCCTCCTTTGCGTAGTAACTTT-TCGTCTCGCACTGGG-ATCCGGAGGG-ACTCTTGCCGTAAAACCCCCCAATTTTCCAAAGG
		Glomerella_graminicola          AACCCTCAAGCTCTGCTTGGTGTTGGGG------CC-CTACGGTTGACGTAGGCCCTC---AAAGGTAGTGGCGGACCCTCCCGG-AGCCTCCTTTGCGTAGTAACT-A-ACGTCTCGCATCGGG-ATCCGGAGGG-ACTCTTGCCGTAAAACCCCCCAATTTTTCAATGG
		Colletotrichum_orbiculare       AACCCTCAAGCACCGCTTGGCGTTGGGG------CTTCCACGGCTGACGTGGGCCCTC---AAAGACAGTGGCGGACCCTCGCGG-AGCCTCCTTTGCGTAGTAACATA-CAACCTCGCACCGGG-ACCCGCAGGGCACTCCTGCCGTAAAACCCCCCAATTTTTACAAGG
		Hypocrea_rufa                   AACCCTCGAACCCCTCCGGGGGGTCGG-------CGTTGGGGACTTCGGGAACCCCTCCCGAAATACAGTGGCGGTC--TCGCCGCAGCCTCTCATGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGT-CCGTAAAACACCCAACTTCTGAAATG-
		Elsino_australis               ACCAATCAAGCCCCGCTTGGTATTAGGCGCCTGGCCGCCCCCCCCGTGGCCGGCCCGCCCGAAATGCATCGGCGAGG---CACCG--ACCCCCGGCGTGTTAGAATTT---CGAAACGT-CAGGAGCACCGGTGTTAACCTCTGCCGTGAAACCTTTCAATTTTTCTAAG-
		Saccharomyces_cerevisiae        AAATTGCTGGCCTTTCATTGGATGTTTTTTTTTTCCAAAGAGAGGTTTCTCTGCGTGCTTGAAATGCAAGTACGGTCGTTTTAGGTTACCAACTGCGGCTAATCTTTTTTACTGAGCGTATTGGAACGTTATCGATAAGAAGAGGCGTCTAGGCAACAATGTTCTTAAAGT
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 171 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;