NEXUS [File created by TreeBASE: 7/26/07 20:58:12] [Matrix accession#: M761] BEGIN TAXA; TITLE M761; DIMENSIONS NTAX=21; TAXLABELS Phaeosphaeria_avenaria Ophiosphaerella_herpotricha Pleospora_herbarum Dothidea_hippophaeos Phaeocryptopus_gaeumannii Elsino_australis Cladosporium_tenuissimum Cladosporium_cladosporioides Cladosporium_sp. Cladosporium_herbarum Cladosporium_oxysporum Cladosporium_sphaerospermum 'P4-5' Cladosporium_fulvum 'P4-7' MS594 Mycosphaerella_graminicola Botryosphaeria_dothidea Saccharomyces_cerevisiae Torulaspora_delbrueckii Candida_glabrata ; END; BEGIN CHARACTERS; TITLE M761; DIMENSIONS NCHAR=564; FORMAT DATATYPE = DNA MISSING = ? GAP = - ; MATRIX Phaeosphaeria_avenaria TCAGTAGTTTACTACTGTAAAGGAGGCTGTTAGTCT-GTATAG--CGCAAGCTGATGA-GCAGCTAGCCTC-----TTTTATCCA------CCCTTGTCTTTTGCGTACCCAC-GTTTCCTCGGCAGGCTTGCCTGCCGATTGGACAAACCTATAACCTTTTTAAT--TTTCAATCAGCGTCTGAA-AAA---CT--TAAT--AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCTTGGTATTCCATGGG-GCATGCCTGTTCGAGCGTCATTTGTA--CC-CTCAAGCTCTGCTTGGTGTTGGGTGTTTG---TCC--TCTCCCTAGTGTTTGGACTCGCC-TTAAAATAATTGGCAGCCAGTGTTTTGGTATTGAAGCGCAGCACAAGTCGCG---A-TTCTTATCAA--ATACTT--GCGTCCAC-------AAGCCC-------TTTTTTAACTT---------- Ophiosphaerella_herpotricha TCCGTAGGTGAACCTGCGGAAGGATCATTACACGATAGTACAGGCCCCAAGTGTAGAA-CAAACTACGCAGACGGGTTATGTCTATTA---CCCTTGTTTATTGAGTACCTAT-GTTTCCTTGGTGGGCTTGCCCGCCAAAAGGACACCCTATTAAACCTTTTTAT--TTTCAATCAGCGTCTGAATAAA---AA--TAAT--AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCTTGGTATTCCATGGG-GCATGCCTGTTCGAGCGTCATTTGTA--CC-TTCAAGCTCTGCTTGGTGTTGGGTGTTTG---TCT--ACTCCACTGCGTTTGGACTCGCC-TTAAAGTAATTGGCAGCCTATATTT-GGTTTTGA-GCGCAGCACATTTTGCG---TCTTACTGCCAG--TTATATAGGCACCCAAT------AAGCCT-------TTTTATCACGT---------- Pleospora_herbarum -----------------CACAATATGAAAGCGGGTTGGGACCTCACCTCGGTGAGGGCTCCAGCTTGTCTGA-----ATTATTCA------CCCATGTCTTTTGCGCACTTCTTGTTTCCTGGGCGGGTTCGCCCGCCACCAGGACCAAACCATAAACCTTTTTGTAATTGCAATCAGCGTCAGTAAACA---ATG-TAAT--TATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCTTTGGTATTCCAAAGG-GCATGCCTGTTCGAGCGTCATTTGTA--CC-CTCAAGCTTTGCTTGGTGTTGGGCGTCT----TTG--TCTCTCACGAG-----ACTCGCC-TTAAAATGATTGGCAGCCGACCTACTGGTTTCGGAGCGCAGCACAATTCTTGC--ACTTTGAATCAGCCTTGGTTGAGCATCCATC------AAGACCACA---TTTTTTTCAACT---------- Dothidea_hippophaeos ---AAGATTGAGTGTCGCGACCTAAAAAATCGCGACCACTTCCAACCCTCTGTTGTTATAACTACCTTGTTGC----TTTGGCGGGACCGTTCGGTCCTCCGAGCGCA-CCAG-TCCTCG--GACAGGTGAGCGCCCGCCAGAGT-CCAACCAAACTCTTGTTTTT---AACCAG--TCGTCTGAGTATAAAATTT-TAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTGTTCGAGCGTCATTACA---CCACTCAAGCACTGCTTGGTATTGGGC-A------TCG--TCCGTC-GAAAGGCGGGCGTGCC-TCGAAGACCTCGGCGG--GGTTTCTCCAACTTCGGGCGTAGTAGAGTTAAATCGAACGTCTTATAAG--CTTGGTGGGACTCCATTG-----CCGTTAAAC---CTTT-----TATTTTTAT-AGG Phaeocryptopus_gaeumannii ---AAGAGTAAGGGTTATT-CGTAG-----CCCGACC---TCCAAMCCTTTGTTGTTATAACTACCTCGTTGC----TTTGGCGGGACCGCTCGGTCT--CGAGCTG--CTGG-TCTTCG--GCCCGGCAAGTGCCCGCCAGAGT-CTACTCAAACTCTTGTTTT----AACCGG--TCGTCTGAGT-TAAACTTT-TAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAAATCTTTGAAACGCACATTGCGCTCCCTGGTATTCCGGGGGAGCATGCCTGTTCGAGCGTCATTACA---CCACTCAAGCACTGCTTGGTATTAGGCCA------TCG--TCCCCC-GAAAGGTGGGCGTGCC-TCAAACACCTCGGCGG--AACCTCACCGGCTTTGGGCGTAATAAAATTTC-TC-AACGTCTTATAAGTACCGGTTCTGACTCCTTTG-----CCGTTAAAC---CCCA-----AACTTTTAA-AGG Elsino_australis ---ACGAGGAAGGGTT-T--CCGAAAGGAGCCCGAAC--TCCCCACCCTTTGCTGTTGCGAATC---TGTTGC----TTCGGCGGGCCCGCCCCCCCATCCCTGGGGGGCCGG-GCCTCACCGCCCGGACAGCGCCCGCCGGAGGACCGAATCAACTCTGTTTTTA---ACCATA--ATGTCGGAGTACTTTTGTA-CAATCAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCAATCAAGCCCCGCTTGGTATTAGGCGCCTG--GCCG--CCCCCC-CCGTGGCCGGCCCGCC-CGAAATGCATCGGCG---AGG--CACCGACCCCCGGCGTGTTAGAATTTC-GA-AACGTC--AGGAGCACCGGTGTTAA--CCTCTG-----CCGTGAAAC---CTTTCAAACTATTTTTCT-AAG Cladosporium_tenuissimum ----CAAGT-GACCCCGG--TCTAA-CCACCGGGATG-TTCATAACCCTTTGTTGTCCGA---C---TCTG------T-TG------------CCTCC--GGGGCGACCCTGC--CTTCGGGCG--GGG--GCTCCGGGT--GGACACTTCAAACTCTTGCGT------AACTTTG-GAGTCTGAGTAAACTTAAT-TAATA-AATTAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGGAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGTATTCCGGGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTCGCTTGGTATTGGGCAA-------CG--CGGTCC-------GCCGGTG-CC-TCAAATCGACCGGCTG--GGTCTTCTGTCCCCTAAGCGTTGTGGAAACTA-TT---CG-CTAAAGGGTGTT-CGGGAGGCTACGCCGT----AAAACAACC---CCATTTCTAAGG---------- Cladosporium_cladosporioides ----CAAGT-GACCCCGG--TCTAA-CCACCGGGATG-TTCATAACCCTTTGTTGTCCGA---C---TCTG------T-TG------------CCTCC--GGGGCGACCCTGC--CTTCGGGCG--GTG--GCTCCGGGT--GGATACTTCAAACTCTTGCGT------AACTTTG-CAGTCTGAGTAAACTTAAT-TAATA-AATTAAAACTTTTAACAACGTATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGTATTCCGGGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTCGCTTGGTATTGGGCAA-------CG--CGGTCC-------GCCGGTGGCC-TCAAATCGACCGGCTG--GGTCTTCTGTCCCCTAAGCGTTGTGGAAACTA-TT---CG-CTAAAGGGTGTT-CGGGAGGCTACGC-GT----AAAACAACC---CCATTTCTAAGG---------- Cladosporium_sp. ------AGT-GACCCCGG--TTTC--CCACCGGGATG-TTCATAACCCTTTGTTGTCCGA---C---TCTG------T-TG------------CCTCC--GGGGCGACCCTGC--CTTCGGGCG--GGG--GCTCCGGGT--GGGCACTTCAAACTCTTGCGT------AACTTTG-CAGTCTGAGTAAACTTAAT-TAATA-AATTAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGTATTCCGGGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTCGCTTGGTATTGGGCAA-------CG--CGGTCC-------GCCGCGTACC-TCAAATCGACCGGCTG--GGTCTTCTGTCCCCTAAGCGTTGTGGAAACTA-TT---CG-CTAAAGGGTGTT-CGGGAGGCTACGCCGT----AAAACAACC---CCATTTCTAAGG---------- Cladosporium_herbarum ----CAAGA-ACGCCCGG--GCTT--CGGCCTGGTTA-TTCATAACCCTTTGTTGTCCGA---C---TCTG------T-TG------------CCTCC--GGGGCGACCCTGC--CTTCGGGCG--GGG--GCTCCGGGT--GGACACTTCAAACTCTTGCGT------AACTTTG-CAGTCTGAGTAAACTTAAT-TAATA-AATTAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGTATTCCGGGGG--CATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTCGCTTGGTATTGGGCAAA------CG--CGGTCC-------GCCGCGTGCC-TCAAATCGTCCGGCTG--GGTCTTCTGTCCCCTAAGCGTTGTGGAAACTA-TT---CG-CTAAAGGGTGTT-CGGGGGGGTACCTG-T----AAAACAACC---CCATTTCTAAGG---------- Cladosporium_oxysporum ----CAAGA-ACGCCCGG--GCTT--CGGCCTGGTTA-TTCATAACCCTTTGTTGTCCGA---C---TCTG------T-TG------------CCTCC--GGGGCGACCCTGC--CTTCGGGCG--GGG--GCTCCGGGT--GGACACTTCAAACTCTTGCGT------AACTTTG-CAGTCTGAGTAAACTTAAT-TAATA-AATTAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGTATTCCGGGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTCGCTTGGTATTGGGCAA-------CT--CGGTCC-------GCCGGGTGCCCTCAAATCGTCCGGCTG--GGTTCTCTGTCCC-TAAGCGTTGTGGCAACTA-TT---CG-CTAAAGGGTGTT-CGGGAGGCTACGCGTT----AAAACAACC---CCATTTCTAAGG---------- Cladosporium_sphaerospermum ----CAAGTTGACACCCG--CCCTC-GGTCCGGGATG-TTCACAACCCTTTGTTGTCCGA---C---TCTG------T-TG------------CCTCC--GGGGCGACCCTGC--CTCCGGGCG--GGG--GCCCCGGGT--GGACATTTCAAACTCTTGCGT------AACTTTG-CAGTCTGAGTAAATTTAAT-TAATA-AATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGTATTCCGGGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTCGCTTGGTATTGGGCGA-------CG--CGGTCC-------GCCGGCG-CC-TCAAATCGACCGGCTG--GGTCTTTCGTCCCCTCAGCGTTGTGGAAACTA-TT---CG-CTAAAGGGTGCCGCGGGAGGCCACGCCGT----AAAACAACC---CCATTTCTAAGG---------- 'P4-5' ------CCTCGGGGAGAG--GG----CGGGCCGTATC-CCAC--ACCCTTTGT-GAACCACAAC---TCTG------T-TG------------CTTCG--GGGGCGACCCTGC--CGTCAGGCGGCGGT--GCCCCCGGTG-GCCTTCAACTAA--ACTCTGC------ATCTTTT-GCGTCGGAGTCTT-TTAAA-GAATT-AAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCGTGGTATTCCGCGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTAGCTTGGTATTGGGCG-------CCG--CGGCGAACTCATCGCTGCGCGCC-TTAAAGTCTCCGGCTG--AGC-AGCCTGTCTCCGAGCGTTGTGACACATG-T----CG-CTAGGGAGTGCA-GG---TCTGCCGCGG-----CCGTTAAAT---CTTTATCAAAGG---------- Cladosporium_fulvum -------CTGAGTGAGGG--C-T---CACGCCCGACC-TCCA--ACCCTCTGT-GAACC--AAC---TCTG------T-TG------------CTTCG--GGGGCGACCC-GC--CGTTTCGGAACGGC--GCCCC--G---GAGATCATC-AA--ACACTGC------ATCTTT--GCGTCGGAGTCTT-AAAGT-AAATTTAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCGTGGTATTCCGCGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTAGCTTGGTATTGGGCG-------TCG--CGGT----T-----CCGCGCGCC-TTGAAGTCTCCGGCTG--AGC-AGTTCGTCTCTAAGCGTTGTGGCATATA-TT--TCG-CTAAAGAGTTCG-GG---CGGCTTTTGG-----CCGTTAAAT---CTTT-TCAAAGG---------- 'P4-7' -----AAGAGATGGCGGG--CCTCG-CTGCCCCCGTC-CCTC--ACCCTTTGTTGACCGAAAAA---CCTT------TTTG------------CCTCG--GGGGC---CGTGT--GGCCACGGC-CGCC--GCTCCCAG---AGGACCAACCAA---CGCTGT------CTCTGT--GTGTCGGAGTACA-TGATT-GAAT--AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGAACATTGCGCCCTTTGGCATTCCGAGGG-GCATGCCCGTTCGAGCGTCATTAAAT--CCAATCCAGCCCGGCTGGGTGTTGGGCGAT-----CCG--GGGGCC-GTGTGGTCCCCGCGCC-TCAAAGTCCGTCGCTG--TTCGCACCCGAATCTCAGCGTCGTGGAATCCG-TT--TCG-CTGGCGAGAGGG-GG-GCCGTCCGGCCG-----TCGTCGAGA---CGAA-CGATGTTTTTTCTCAGG MS594 ---CCGAGCGAAGGGGCG--CC-CG-C-GCCCCGACC-GCCC--ACCCTCTGT-GAACGAAACC---CGT---------TG------------CCTCG--GGGGCGACCCGGA--CGTCACGTC-CGGC--CGCCCCCG---GGGGTGACCCAA---CACTGC------ATCTGT--GCGTCGGAGTACT-TCAGT-AATG--AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGCATTCCGGGGG-GCATGCCCGTTCGAGCGTCATTTCA---CCACTCCCGCCTGGCGGGGTATTGGGCG-------CCG--CGGCC-----TCGGCCGCGCGCC-TCGAAGTCTCCGGCCG--AGT-CGTTCGTCTCCCAGCGTTGTGGCACACA-AT-CTCG-CTG-CG-GTGGG-CG-GACGGC-GGCGG-----CCGTCGA-A---CTCC-TTACAGG---------- Mycosphaerella_graminicola -------CCGAGCGAGGG--CCTC--CGGGTCCGACC-TCCA--ACCCTTTGT-GAACACATCC---CGT---------TG------------CTTCG--GGGGC----------GACCCTGCC-GGGC--GCCCCCGG---AGGACCACCAAAAAACACTGC------ATCTCT--GCGTCGGAGTTTA-CGAGT-AAATCGAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGTATTCCGGGGG-GCATGCCCGTTCGAGCGTCATTACA---CCACTCCAGCCTCGCTGGGTATTGGGCGTCTTTTCGCG--GGGGAT-CACTCCCCCGCGCGCC-TCAAAGTCTCCGGCTG--AGCGGTCTCGTCTCCCAGCGTTGTGGCATCAC-GT-CTCG-CCGCGGAGTTCA-CGAGCCCTC--ACGG-----CCGTTAAAT---CACA-CCTCAGG---------- Botryosphaeria_dothidea ---CCGAGTTGATTCGGG--C-T---CCGGCCCGATC-CTCCC-ACCCTTTGTGTACCTACCTC---TGTTGC----TTTGGCGGGCCGCGGTCCTCC--GCGGCCGCCCCCC-TCCCCGGGGGGTGACCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTA---AACGATG-CAGTCTGAAAAAC---ATT-TAATA-AACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCTTTGGTATTCCGAAGG-GCATGCCTGTTCGAGCGTCATTACAA--CC-CTCAAGCTCTGCTTGGTATTGGGCACCGTCCTTTG--CGGG-------------CGCGCC-TCAAAGACCTCGGCGG--TGGCGTCTTGCCT-CAAGCGTAGTAGAACATACAT-CTCG-CTTCGGAGCGCAGGGCGTCGCCCGCCGGACGAACCTTCTGAA---CTTTTCTCAAGG---------- Saccharomyces_cerevisiae ACGGTGAGAGATTTC---TGTGCTTTTGTTATAGGACAATTAAAACCGTTTCAATACAACACACTGTGGAGTTTTCATATCTTTG--CAACTTTTTCTTTGGG-----------CATTCGA--GCAATC--GGGGCCAGAGGTAACAAACACAAACAATTTTATTTATATTAAATTTTTGTCAAAAACAAGGAAATTTAAAATATTAAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAA-TCTTTGAA-CGCACATTG-NCCCCTTGGTATTCCAGGGG-GCATGC-TGTTTGAGCGTCATTTCCTTCTCAAACA--TTCTGTTTGGTAGTGAGTGATACTCTTTG--GAGTTAACTTGAAATTGCTGGCCTTTTCATTGGATGTTTTTTTTTTCCAAAGA-------GAGGTTTCTCTGCGTGCTTGAGTATAATGCAAGT-ACGGTCGTTTTAGGTTTTACCAACTGCGGCTAACTTTTTTATACTGAGCG-TA-T Torulaspora_delbrueckii GGGGCTTCTGTATTC---ACTGTTTCTCTGTCTG--CGGTTCACTGCCTAAAAATTATACACACACTGGAGTTTTCTTTTAAAACA-CTTCTTCTTCTTTGGG-----------CTT------GCAA----GAGCCCGGAGTTGACAAACACAAACAATTTTGTT-ATATTATAATCAAGTCAAAACCAATGAAATACAAATAATTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCTTGGTATTCCAGGGG-GCATGCCTGTTTGAGCGTCATTTCCTTCTCAAAGAACTCTTCTTTGGTAGTGAGTGACACTCTTTCTAGAGTTAACTTGAAATTGCTAGCCATATAATAGC-TGTTGATTGCTGACTTTG--------GACGGAGCGATTTGTCC---AGTCTGCTGATACCGATTGTCGTATTAGGTTTTACCAACTTCGACGGACGTAGTGTTAGTGGGCGTTACT Candida_glabrata TGGATCTCTCTATTCCAAAGAGGTGTTTTATCACACGACTCGACACTTTCTAATTACTACACACAGTGGAGTTTACTTTACTACTATTCTTTTGTTCGTTGGGGGAACGCTCT-CTTTCGGGGGGGAGT--TCTCCCAGTGGATGCAAACACAAACAAATATTTTTTTAAACTAATTCAGTCAACA-CAAAGAAA---A-CAACTTCAAAACTTTCAACAATGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCTCTGGTATTCCGGGGG-GCATGCCTGTTTGAGCGTCATTTCCTTCTCAAACACATTGTGTTTGGTAGTGAGTGATACTCGTTTTTGAGTTAACTTGAAATTGTAGGCCATATCAGTATGTGGGACACGAGCGCAAGCTTCTCTATTAATCTGCTGCTCGTTTGCGCGAGCGGCGGGGGTTAATACTGTATTAGGTTTTACCAACTCGGT-----GTTGATCTAGGGAGGGATAAG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1 - 564 ; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; END;