NEXUS
[File created by TreeBASE:  7/26/07  20:58:12]
[Matrix accession#: M762]

BEGIN TAXA;
	TITLE M762;
	DIMENSIONS  NTAX=16;
	TAXLABELS
		Glomerella_graminicola	Hypocrea_rufa	Xylaria_hypoxylon	Pleospora_herbarum	Saccharomyces_cerevisiae	Glomus_mosseae	Gigaspora_albida	'Ceratobasidium oryzae-sativae'	Thanatephorus_cucumeris	Phaffia_rhodozyma	Xanthophyllomyces_dendrorhous	Cystofilobasidium_capitatum	Sorosporium_saponariae	Ustilago_vaillantii	Sporisorium_sorghi	'P1-9'
	;
END;

BEGIN CHARACTERS;
	TITLE M762;
	DIMENSIONS NCHAR=158;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Glomerella_graminicola                AAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTT
		Hypocrea_rufa                         AAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTT
		Xylaria_hypoxylon                     AAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTT
		Pleospora_herbarum                    CAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTT
		Saccharomyces_cerevisiae              AAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTG-NCCCCTTGGTATTCCAGGGGGCATGC-TGTTTGAGCGTCATTT
		Glomus_mosseae                        TCACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCATAATTTTGTGAATCATCGAATCTTTGAACGCAAATTGCACTCCCTGGTATTCCGGGGAGTATGCCTGTTTGAGGGTCGTTA
		Gigaspora_albida                      AAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATATGAATTGCAGAATTCCGTGAATCATCAAATTTTTGAACGCAAATTGCACTTCTTGGTATTCCAAGGAGTACACATGCTTGAGGGTCGTTA
		'Ceratobasidium oryzae-sativae'       AAAGTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCTTGGAGCATGCCTGTTTGAGTATCATGA
		Thanatephorus_cucumeris               TAAGTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCTTGGAGCATGCCTGTTTGAGTATCATGA
		Phaffia_rhodozyma                     AAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGA
		Xanthophyllomyces_dendrorhous         AAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGA
		Cystofilobasidium_capitatum           TAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCTTTGGTATTCCGAAGAGCATGCCTGTTTGAGTGTCATGA
		Sorosporium_saponariae                CAACTTTCGGCAACGGATCTCTAGGTTCTCCTATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGACATCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTTGAGTGTCACGA
		Ustilago_vaillantii                   CAACTTTCGGCAATGGACCTCTTGGTTCTCCTATCGATGAAAAACCCAGCGAATTGCAATAAGTAATGTGAATTGCAAAATTCATTGAACCATTGATTTTTTGAACGCATCTTGCCCCCTTTGGTATTCCTTAGGGCATGCCTGTTTGAGTGTCATGA
		Sporisorium_sorghi                    CAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGA
		'P1-9'                                TAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCTTGGAGCATGCCTGTTTGAGTGTCATGA
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 158 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;