#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 10 source(s): - 'EF_All_Boot_01.tre' - 'EF_All_Boot_02.tre' - 'EF_All_Boot_03.tre' - 'EF_All_Boot_04.tre' - 'EF_All_Boot_05.tre' - 'EF_All_Boot_06.tre' - 'EF_All_Boot_07.tre' - 'EF_All_Boot_08.tre' - 'EF_All_Boot_09.tre' - 'EF_All_Boot_10.tre' 25 initial trees discarded/ignored as burn-in from *each* source Total of 750 trees analyzed for summarization: - All trees were treated as unweighted - All trees were unrooted - 14 unique taxa across all trees - 24 unique splits out of a total of 15797 splits - 9 unique non-trivial splits counted out of a total of non-trivial 4547 splits Summarized onto consensus tree with minimum clade frequency threshold of 0.5: - Support values expressed as percentages - Edge lengths on target trees set to mean of edge lengths in sources - Support and other summarization annotations added to target trees as metadata Program Information ------------------- SumTrees 4.4.0 by Jeet Sukumaran and Mark T. Holder DendroPy version : DendroPy 4.4.0 () DendroPy location : C:\Python3\lib\site-packages\dendropy Python version : 3.7.4 (tags/v3.7.4:e09359112e, Jul 8 2019, 19:29:22) [MSC v.1916 32 bit (Intel)] Python executable : C:\Python3\python.exe Python site packages : ['C:\\Python3', 'C:\\Python3\\lib\\site-packages'] Execution Information --------------------- Executed on Dartagnan by desir@Dartagnan Working directory: 'C:\Users\desir\Documents\Google Drive\(2011-2018) - BioGeMM\(2018-2022) - PhD\Mating-type\Phylogenetic Analyses\Multilocus (Synteny Figure - all)\EF\Garli' Started at: 2020-05-14 16:59:28.453645 Ended at: 2020-05-14 16:59:32.483135 Total elapsed time: 4.02949 seconds Actual analysis time: 2.635402 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.4.0. Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=14; TAXLABELS Phyllosticta_capitalensis_CBS128856 Phyllosticta_capitalensis_Gm33 Phyllosticta_capitalensis_LGMF01 Phyllosticta_citriasiana_CBS120486 Phyllosticta_citriasiana_CGMCC314344 Phyllosticta_citribraziliensis_CBS100098 Phyllosticta_citribraziliensis_LGMF08 Phyllosticta_citricarpa_CBS127454 Phyllosticta_citricarpa_CGMCC314348 Phyllosticta_citricarpa_CPC27913 Phyllosticta_citricarpa_Gc12 Phyllosticta_citricarpa_LGMF06 Phyllosticta_citrichinaensis_CBS130529 Phyllosticta_paracitricarpa_CBS141357 ; END; BEGIN TREES; TREE 1 = [&U] (Phyllosticta_capitalensis_CBS128856:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_capitalensis_Gm33:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_capitalensis_LGMF01:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],((Phyllosticta_citrichinaensis_CBS130529:0.042720480559999954[&support=100.0][&length_mean=0.042720480559999954,length_median=0.040924115,length_sd=0.015303126906492368,length_hpd95={0.01332856,0.070417},length_quant_5_95={0.02147621,0.07030744},length_range={0.00901372,0.10594765}],(Phyllosticta_citribraziliensis_CBS100098:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citribraziliensis_LGMF08:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])63:0.008078799322033894[&support=62.93333333333333][&length_mean=0.008078799322033894,length_median=0.00637856,length_sd=0.00509778423972346,length_hpd95={0.0015986,0.01897889},length_quant_5_95={0.00259392,0.0178552},length_range={5.408e-05,0.03063431}])96:0.027223588741355494[&support=96.39999999999999][&length_mean=0.027223588741355494,length_median=0.02566494,length_sd=0.017624063953228485,length_hpd95={0.00023988,0.06246814},length_quant_5_95={0.00445452,0.06246814},length_range={0.00023988,0.10386977}],((Phyllosticta_citriasiana_CBS120486:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citriasiana_CGMCC314344:0.00425630569333332[&support=100.0][&length_mean=0.00425630569333332,length_median=0.0041574,length_sd=0.003912419037198343,length_hpd95={1e-08,0.01248403},length_quant_5_95={1e-08,0.01242519},length_range={1e-08,0.02131435}])87:0.012641245762711889[&support=86.53333333333333][&length_mean=0.012641245762711889,length_median=0.01125254,length_sd=0.007147094312951022,length_hpd95={0.00366387,0.02621418},length_quant_5_95={0.00414027,0.02612734},length_range={0.00366387,0.03848787}],(Phyllosticta_paracitricarpa_CBS141357:0.003880281773333322[&support=100.0][&length_mean=0.003880281773333322,length_median=0.0040241,length_sd=0.004158733646335922,length_hpd95={1e-08,0.01257333},length_quant_5_95={1e-08,0.01257333},length_range={1e-08,0.02135954}],(Phyllosticta_citricarpa_CBS127454:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_CGMCC314348:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_CPC27913:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_Gc12:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_LGMF06:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])86:0.010371963858024698[&support=86.4][&length_mean=0.010371963858024698,length_median=0.008824715,length_sd=0.005619631202193244,length_hpd95={0.00389898,0.02183232},length_quant_5_95={0.00409149,0.02183232},length_range={0.00389898,0.03707888}])71:0.011538162627599243[&support=70.53333333333333][&length_mean=0.011538162627599243,length_median=0.00969043,length_sd=0.007112906998685054,length_hpd95={0.00232468,0.02700956},length_quant_5_95={0.0026259,0.02543315},length_range={0.00087288,0.0383604}])85:0.04353706363779528[&support=84.66666666666667][&length_mean=0.04353706363779528,length_median=0.04246525,length_sd=0.01563182967053898,length_hpd95={0.01428631,0.07533556},length_quant_5_95={0.01927011,0.07362521},length_range={0.00494297,0.09134983}])100:0.08618311370666673[&support=100.0][&length_mean=0.08618311370666673,length_median=0.08500677,length_sd=0.02574763971847802,length_hpd95={0.03578121,0.13376287},length_quant_5_95={0.04893389,0.13243713},length_range={0.0291429,0.16610127}])100:0.0[&support=100.0][&length_mean=0.0,length_median=0.0,length_sd=0.0,length_hpd95={0,0},length_quant_5_95={0,0},length_range={0,0}]; END;