#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 10 source(s): - 'GAPDH_All_Boot_01.tre' - 'GAPDH_All_Boot_02.tre' - 'GAPDH_All_Boot_03.tre' - 'GAPDH_All_Boot_04.tre' - 'GAPDH_All_Boot_05.tre' - 'GAPDH_All_Boot_06.tre' - 'GAPDH_All_Boot_07.tre' - 'GAPDH_All_Boot_08.tre' - 'GAPDH_All_Boot_09.tre' - 'GAPDH_All_Boot_10.tre' 25 initial trees discarded/ignored as burn-in from *each* source Total of 750 trees analyzed for summarization: - All trees were treated as unweighted - All trees were unrooted - 14 unique taxa across all trees - 25 unique splits out of a total of 16262 splits - 10 unique non-trivial splits counted out of a total of non-trivial 5012 splits Summarized onto consensus tree with minimum clade frequency threshold of 0.5: - Support values expressed as percentages - Edge lengths on target trees set to mean of edge lengths in sources - Support and other summarization annotations added to target trees as metadata Program Information ------------------- SumTrees 4.4.0 by Jeet Sukumaran and Mark T. Holder DendroPy version : DendroPy 4.4.0 () DendroPy location : C:\Python3\lib\site-packages\dendropy Python version : 3.7.4 (tags/v3.7.4:e09359112e, Jul 8 2019, 19:29:22) [MSC v.1916 32 bit (Intel)] Python executable : C:\Python3\python.exe Python site packages : ['C:\\Python3', 'C:\\Python3\\lib\\site-packages'] Execution Information --------------------- Executed on Dartagnan by desir@Dartagnan Working directory: 'C:\Users\desir\Documents\Google Drive\(2011-2018) - BioGeMM\(2018-2022) - PhD\Mating-type\Phylogenetic Analyses\Multilocus (Synteny Figure - all)\GAPDH\Garli' Started at: 2020-05-14 17:57:44.336517 Ended at: 2020-05-14 17:57:49.756307 Total elapsed time: 5.41979 seconds Actual analysis time: 3.401822 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.4.0. Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=14; TAXLABELS Phyllosticta_capitalensis_CBS128856 Phyllosticta_capitalensis_Gm33 Phyllosticta_capitalensis_LGMF01 Phyllosticta_citriasiana_CBS120486 Phyllosticta_citriasiana_CGMCC314344 Phyllosticta_citribraziliensis_CBS100098 Phyllosticta_citribraziliensis_LGMF08 Phyllosticta_citricarpa_CBS127454 Phyllosticta_citricarpa_CGMCC314348 Phyllosticta_citricarpa_CPC27913 Phyllosticta_citricarpa_Gc12 Phyllosticta_citricarpa_LGMF06 Phyllosticta_citrichinaensis_CBS130529 Phyllosticta_paracitricarpa_CBS141357 ; END; BEGIN TREES; TREE 1 = [&U] (Phyllosticta_capitalensis_CBS128856:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_capitalensis_LGMF01:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],(Phyllosticta_capitalensis_Gm33:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],(((Phyllosticta_citricarpa_CBS127454:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_CGMCC314348:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_CPC27913:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_Gc12:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_LGMF06:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_paracitricarpa_CBS141357:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])99:0.011724281027027031[&support=98.66666666666667][&length_mean=0.011724281027027031,length_median=0.01132963,length_sd=0.005505710424936117,length_hpd95={0.0022271,0.02263826},length_quant_5_95={0.00342118,0.02164035},length_range={0.00073788,0.03244376}],(Phyllosticta_citriasiana_CBS120486:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citriasiana_CGMCC314344:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])97:0.009362222939560454[&support=97.06666666666666][&length_mean=0.009362222939560454,length_median=0.009004905,length_sd=0.004791294332156361,length_hpd95={2.459e-05,0.01769148},length_quant_5_95={0.00180736,0.01741391},length_range={1.626e-05,0.02606656}])96:0.015876102580195253[&support=95.6][&length_mean=0.015876102580195253,length_median=0.01396769,length_sd=0.008514084423974309,length_hpd95={0.00170129,0.03226954},length_quant_5_95={0.00473391,0.03217733},length_range={0.00061699,0.05035907}],(Phyllosticta_citrichinaensis_CBS130529:0.014704346866666688[&support=100.0][&length_mean=0.014704346866666688,length_median=0.013644765,length_sd=0.008283981028021744,length_hpd95={1e-08,0.02916737},length_quant_5_95={0.00258725,0.02903069},length_range={1e-08,0.04632367}],(Phyllosticta_citribraziliensis_CBS100098:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citribraziliensis_LGMF08:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])77:0.005221404852173912[&support=76.66666666666667][&length_mean=0.005221404852173912,length_median=0.00433276,length_sd=0.0034625030021602312,length_hpd95={7.083e-05,0.0115878},length_quant_5_95={0.00114938,0.011525},length_range={1.418e-05,0.01996456}])65:0.011780460794297353[&support=65.46666666666667][&length_mean=0.011780460794297353,length_median=0.01124885,length_sd=0.0055927988565759685,length_hpd95={0.00328363,0.02374486},length_quant_5_95={0.00371736,0.02173185},length_range={0.00144006,0.03817237}])100:0.05065956084000005[&support=100.0][&length_mean=0.05065956084000005,length_median=0.049249589999999996,length_sd=0.015616222573388851,length_hpd95={0.02244142,0.08054436},length_quant_5_95={0.0274452,0.07774825},length_range={0.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END;