#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 10 source(s): - 'ITS_All_Boot_01.tre' - 'ITS_All_Boot_02.tre' - 'ITS_All_Boot_03.tre' - 'ITS_All_Boot_04.tre' - 'ITS_All_Boot_05.tre' - 'ITS_All_Boot_06.tre' - 'ITS_All_Boot_07.tre' - 'ITS_All_Boot_08.tre' - 'ITS_All_Boot_09.tre' - 'ITS_All_Boot_10.tre' 25 initial trees discarded/ignored as burn-in from *each* source Total of 750 trees analyzed for summarization: - All trees were treated as unweighted - All trees were unrooted - 14 unique taxa across all trees - 25 unique splits out of a total of 15886 splits - 10 unique non-trivial splits counted out of a total of non-trivial 4636 splits Summarized onto consensus tree with minimum clade frequency threshold of 0.5: - Support values expressed as percentages - Edge lengths on target trees set to mean of edge lengths in sources - Support and other summarization annotations added to target trees as metadata Program Information ------------------- SumTrees 4.4.0 by Jeet Sukumaran and Mark T. Holder DendroPy version : DendroPy 4.4.0 () DendroPy location : C:\Python3\lib\site-packages\dendropy Python version : 3.7.4 (tags/v3.7.4:e09359112e, Jul 8 2019, 19:29:22) [MSC v.1916 32 bit (Intel)] Python executable : C:\Python3\python.exe Python site packages : ['C:\\Python3', 'C:\\Python3\\lib\\site-packages'] Execution Information --------------------- Executed on Dartagnan by desir@Dartagnan Working directory: 'C:\Users\desir\Documents\Google Drive\(2011-2018) - BioGeMM\(2018-2022) - PhD\Mating-type\Phylogenetic Analyses\Multilocus (Synteny Figure - all)\ITS\Garli' Started at: 2020-05-14 18:10:15.480951 Ended at: 2020-05-14 18:10:19.967908 Total elapsed time: 4.486957 seconds Actual analysis time: 2.544749 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.4.0. Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=14; TAXLABELS Phyllosticta_capitalensis_CBS128856 Phyllosticta_capitalensis_Gm33 Phyllosticta_capitalensis_LGMF01 Phyllosticta_citriasiana_CBS120486 Phyllosticta_citriasiana_CGMCC314344 Phyllosticta_citribraziliensis_CBS100098 Phyllosticta_citribraziliensis_LGMF08 Phyllosticta_citricarpa_CBS127454 Phyllosticta_citricarpa_CGMCC314348 Phyllosticta_citricarpa_CPC27913 Phyllosticta_citricarpa_Gc12 Phyllosticta_citricarpa_LGMF06 Phyllosticta_citrichinaensis_CBS130529 Phyllosticta_paracitricarpa_CBS141357 ; END; BEGIN TREES; TREE 1 = [&U] (Phyllosticta_capitalensis_CBS128856:4.6114799999999645e-06[&support=100.0][&length_mean=4.6114799999999645e-06,length_median=1e-08,length_sd=0.00012601671969544528,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,0.00345112}],((Phyllosticta_citrichinaensis_CBS130529:0.004469928653333328[&support=100.0][&length_mean=0.004469928653333328,length_median=0.004113324999999999,length_sd=0.003663125578043061,length_hpd95={1e-08,0.01109991},length_quant_5_95={1e-08,0.01103384},length_range={1e-08,0.01693192}],(Phyllosticta_citribraziliensis_CBS100098:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citribraziliensis_LGMF08:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])98:0.010706623834688355[&support=98.4][&length_mean=0.010706623834688355,length_median=0.010130515,length_sd=0.005023781711730306,length_hpd95={0.00158862,0.02102145},length_quant_5_95={0.00359858,0.02021154},length_range={7.18e-05,0.02909492}])96:0.04969430337047347[&support=95.73333333333333][&length_mean=0.04969430337047347,length_median=0.04626219,length_sd=0.022366515457828532,length_hpd95={0.0024943,0.09115698},length_quant_5_95={0.01987139,0.09066189},length_range={0.0024943,0.13781573}],((Phyllosticta_citriasiana_CBS120486:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citriasiana_CGMCC314344:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])88:0.015781523691376694[&support=88.13333333333333][&length_mean=0.015781523691376694,length_median=0.0150697,length_sd=0.006946909104137569,length_hpd95={0.0031836,0.03056381},length_quant_5_95={0.00564565,0.02942373},length_range={0.00041991,0.04263497}],(Phyllosticta_citricarpa_CBS127454:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_CGMCC314348:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_CPC27913:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_Gc12:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_LGMF06:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_paracitricarpa_CBS141357:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])76:0.006337445905096657[&support=75.86666666666667][&length_mean=0.006337445905096657,length_median=0.00539049,length_sd=0.003963535877776579,length_hpd95={0.00010864,0.01385721},length_quant_5_95={0.00158105,0.01348094},length_range={0.00010864,0.02150378}])85:0.0470223754874214[&support=84.8][&length_mean=0.0470223754874214,length_median=0.03964716,length_sd=0.026006867979947952,length_hpd95={0.0141358,0.10568286},length_quant_5_95={0.02052059,0.10566504},length_range={0.01330853,0.19506057}])100:0.11353439554666682[&support=100.0][&length_mean=0.11353439554666682,length_median=0.099744795,length_sd=0.05168845995704956,length_hpd95={0.05386394,0.21351623},length_quant_5_95={0.06162555,0.20947344},length_range={0.0443616,0.48054659}],(Phyllosticta_capitalensis_Gm33:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_capitalensis_LGMF01:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-0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END;