#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 10 source(s): - 'Multilocus_All_Strains_Comparative_Boot_01.tre' - 'Multilocus_All_Strains_Comparative_Boot_02.tre' - 'Multilocus_All_Strains_Comparative_Boot_03.tre' - 'Multilocus_All_Strains_Comparative_Boot_04.tre' - 'Multilocus_All_Strains_Comparative_Boot_05.tre' - 'Multilocus_All_Strains_Comparative_Boot_06.tre' - 'Multilocus_All_Strains_Comparative_Boot_07.tre' - 'Multilocus_All_Strains_Comparative_Boot_08.tre' - 'Multilocus_All_Strains_Comparative_Boot_09.tre' - 'Multilocus_All_Strains_Comparative_Boot_10.tre' 25 initial trees discarded/ignored as burn-in from *each* source Total of 750 trees analyzed for summarization: - All trees were treated as unweighted - All trees were treated as rooted - 15 unique taxa across all trees - 33 unique splits out of a total of 19037 splits - 17 unique non-trivial splits counted out of a total of non-trivial 7037 splits Summarized onto consensus tree with minimum clade frequency threshold of 0.5: - Support values expressed as percentages - Edge lengths on target trees set to mean of edge lengths in sources - Support and other summarization annotations added to target trees as metadata - Target tree(s) rerooted using outgroup: 'Diplodia_seriata_DS831' Program Information ------------------- SumTrees 4.4.0 by Jeet Sukumaran and Mark T. Holder DendroPy version : DendroPy 4.4.0 () DendroPy location : C:\Python3\lib\site-packages\dendropy Python version : 3.7.4 (tags/v3.7.4:e09359112e, Jul 8 2019, 19:29:22) [MSC v.1916 32 bit (Intel)] Python executable : C:\Python3\python.exe Python site packages : ['C:\\Python3', 'C:\\Python3\\lib\\site-packages'] Execution Information --------------------- Executed on Dartagnan by desir@Dartagnan Working directory: 'C:\Users\desir\Documents\Google Drive\(2011-2018) - BioGeMM\(2018-2022) - PhD\Mating-type\Phylogenetic Analyses\Multilocus (Comparative Cladograms - all)\Multilocus\Garli' Started at: 2020-08-04 17:14:20.149742 Ended at: 2020-08-04 17:14:27.683792 Total elapsed time: 7.53405 seconds Actual analysis time: 4.9350570000000005 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.4.0. Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=15; TAXLABELS Diplodia_seriata_DS831 Phyllosticta_capitalensis_CBS128856 Phyllosticta_capitalensis_Gm33 Phyllosticta_capitalensis_LGMF01 Phyllosticta_citriasiana_CBS120486 Phyllosticta_citriasiana_CGMCC314344 Phyllosticta_citribraziliensis_CBS100098 Phyllosticta_citribraziliensis_LGMF08 Phyllosticta_citricarpa_CBS127454 Phyllosticta_citricarpa_CGMCC314348 Phyllosticta_citricarpa_CPC27913 Phyllosticta_citricarpa_Gc12 Phyllosticta_citricarpa_LGMF06 Phyllosticta_citrichinaensis_CBS130529 Phyllosticta_paracitricarpa_CBS141357 ; END; BEGIN TREES; TREE 1 = [&R] (Diplodia_seriata_DS831:0.5689687488533338[&support=100.0][&length_mean=0.5689687488533338,length_median=0.55518195,length_sd=0.1206672281968548,length_hpd95={0.34150586,0.79289166},length_quant_5_95={0.40525841,0.77548214},length_range={0.32191443,1.22748922}],(Phyllosticta_capitalensis_CBS128856:0.00021707977333333139[&support=100.0][&length_mean=0.00021707977333333139,length_median=1e-08,length_sd=0.00039212634335753974,length_hpd95={1e-08,0.00119879},length_quant_5_95={1e-08,0.00119878},length_range={1e-08,0.00247487}],(Phyllosticta_capitalensis_Gm33:0.0017670023999999994[&support=100.0][&length_mean=0.0017670023999999994,length_median=0.001362945,length_sd=0.001835115809670073,length_hpd95={1e-08,0.00518316},length_quant_5_95={1e-08,0.00517681},length_range={1e-08,0.00782855}],Phyllosticta_capitalensis_LGMF01:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])57:0.0017323273317865434[&support=57.46666666666667][&length_mean=0.0017323273317865434,length_median=0.00178679,length_sd=0.0007665301203949057,length_hpd95={0.00058322,0.00311309},length_quant_5_95={0.00061165,0.00311234},length_range={0.00057677,0.00434581}])100:0.07808985437165769[&support=99.73333333333333][&length_mean=0.07808985437165769,length_median=0.07672904,length_sd=0.01959315750501494,length_hpd95={0.04203401,0.11442473},length_quant_5_95={0.04755043,0.1102264},length_range={0.02440092,0.13165326}],(((Phyllosticta_citriasiana_CBS120486:0.0011792108666666696[&support=100.0][&length_mean=0.0011792108666666696,length_median=0.00113411,length_sd=0.0008887711866401684,length_hpd95={1e-08,0.00261802},length_quant_5_95={1e-08,0.00259553},length_range={1e-08,0.00560946}],Phyllosticta_citriasiana_CGMCC314344:0.0025084591600000017[&support=100.0][&length_mean=0.0025084591600000017,length_median=0.0024430750000000003,length_sd=0.0013567244036959691,length_hpd95={0.00039217,0.00527175},length_quant_5_95={0.00056788,0.00486649},length_range={1e-08,0.00712842}])100:0.011233595840000004[&support=100.0][&length_mean=0.011233595840000004,length_median=0.010905709999999999,length_sd=0.003476670387452837,length_hpd95={0.00352491,0.01745325},length_quant_5_95={0.00575093,0.01720062},length_range={0.00283008,0.02390905}],(Phyllosticta_paracitricarpa_CBS141357:0.0005888316666666654[&support=100.0][&length_mean=0.0005888316666666654,length_median=0.00060425,length_sd=0.0006357186573274817,length_hpd95={1e-08,0.00186813},length_quant_5_95={1e-08,0.00185653},length_range={1e-08,0.00384048}],(Phyllosticta_citricarpa_CPC27913:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],(Phyllosticta_citricarpa_CBS127454:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_CGMCC314348:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_Gc12:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_LGMF06:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])62:0.0010282066379310346[&support=61.86666666666667][&length_mean=0.0010282066379310346,length_median=0.00064086,length_sd=0.0005132633181685998,length_hpd95={0.00058229,0.00188983},length_quant_5_95={0.00060102,0.00188815},length_range={0.00058202,0.00314367}])87:0.0014181238437978565[&support=87.06666666666666][&length_mean=0.0014181238437978565,length_median=0.00124386,length_sd=0.0007946250716037355,length_hpd95={0.00056578,0.00308119},length_quant_5_95={0.00059861,0.00308119},length_range={0.00056578,0.0044496}])99:0.007966302584118443[&support=99.06666666666666][&length_mean=0.007966302584118443,length_median=0.00802229,length_sd=0.0031244423816656195,length_hpd95={0.00229605,0.01404235},length_quant_5_95={0.00292485,0.01356825},length_range={0.000386,0.01945634}])100:0.03842870292000006[&support=100.0][&length_mean=0.03842870292000006,length_median=0.038140285,length_sd=0.007688372445930651,length_hpd95={0.02459595,0.05261797},length_quant_5_95={0.02654824,0.05136271},length_range={0.0153438,0.06708359}],(Phyllosticta_citrichinaensis_CBS130529:0.01376818808000001[&support=100.0][&length_mean=0.013768188080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END;