#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 10 source(s): - 'ACT_All_Comparative_Boot_01.tre' - 'ACT_All_Comparative_Boot_02.tre' - 'ACT_All_Comparative_Boot_03.tre' - 'ACT_All_Comparative_Boot_04.tre' - 'ACT_All_Comparative_Boot_05.tre' - 'ACT_All_Comparative_Boot_06.tre' - 'ACT_All_Comparative_Boot_07.tre' - 'ACT_All_Comparative_Boot_08.tre' - 'ACT_All_Comparative_Boot_09.tre' - 'ACT_All_Comparative_Boot_10.tre' 25 initial trees discarded/ignored as burn-in from *each* source Total of 750 trees analyzed for summarization: - All trees were treated as unweighted - All trees were treated as rooted - 15 unique taxa across all trees - 36 unique splits out of a total of 17003 splits - 20 unique non-trivial splits counted out of a total of non-trivial 5003 splits Summarized onto consensus tree with minimum clade frequency threshold of 0.5: - Support values expressed as percentages - Edge lengths on target trees set to mean of edge lengths in sources - Support and other summarization annotations added to target trees as metadata - Target tree(s) rerooted using outgroup: 'Diplodia_seriata_DS831' Program Information ------------------- SumTrees 4.4.0 by Jeet Sukumaran and Mark T. Holder DendroPy version : DendroPy 4.4.0 () DendroPy location : C:\Python3\lib\site-packages\dendropy Python version : 3.7.4 (tags/v3.7.4:e09359112e, Jul 8 2019, 19:29:22) [MSC v.1916 32 bit (Intel)] Python executable : C:\Python3\python.exe Python site packages : ['C:\\Python3', 'C:\\Python3\\lib\\site-packages'] Execution Information --------------------- Executed on Dartagnan by desir@Dartagnan Working directory: 'C:\Users\desir\Documents\Google Drive\(2011-2018) - BioGeMM\(2018-2022) - PhD\Mating-type\Phylogenetic Analyses\Multilocus (Comparative Cladograms - all)\ACT\Garli' Started at: 2020-08-04 15:33:19.877699 Ended at: 2020-08-04 15:33:26.351778 Total elapsed time: 6.474079 seconds Actual analysis time: 4.339983 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.4.0. Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=15; TAXLABELS Diplodia_seriata_DS831 Phyllosticta_capitalensis_CBS128856 Phyllosticta_capitalensis_Gm33 Phyllosticta_capitalensis_LGMF01 Phyllosticta_citriasiana_CBS120486 Phyllosticta_citriasiana_CGMCC314344 Phyllosticta_citribraziliensis_CBS100098 Phyllosticta_citribraziliensis_LGMF08 Phyllosticta_citricarpa_CBS127454 Phyllosticta_citricarpa_CGMCC314348 Phyllosticta_citricarpa_CPC27913 Phyllosticta_citricarpa_Gc12 Phyllosticta_citricarpa_LGMF06 Phyllosticta_citrichinaensis_CBS130529 Phyllosticta_paracitricarpa_CBS141357 ; END; BEGIN TREES; TREE 1 = [&R] (Diplodia_seriata_DS831:0.2876991135866668[&support=100.0][&length_mean=0.2876991135866668,length_median=0.26922687,length_sd=0.11050895491264565,length_hpd95={0.15192124,0.44237507},length_quant_5_95={0.17750053,0.43531255},length_range={0.10943193,1.47356509}],(Phyllosticta_capitalensis_CBS128856:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_capitalensis_Gm33:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_capitalensis_LGMF01:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])73:0.05215501729582571[&support=73.46666666666667][&length_mean=0.05215501729582571,length_median=0.04847116,length_sd=0.024860839216399956,length_hpd95={0.0109026,0.10649501},length_quant_5_95={0.01580773,0.10040693},length_range={0.00317612,0.13710605}],((Phyllosticta_citrichinaensis_CBS130529:0.0072722809599999865[&support=100.0][&length_mean=0.0072722809599999865,length_median=0.0072767249999999995,length_sd=0.005991210305036164,length_hpd95={1e-08,0.01735605},length_quant_5_95={1e-08,0.0173156},length_range={1e-08,0.0387798}],(Phyllosticta_citribraziliensis_CBS100098:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citribraziliensis_LGMF08:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])98:0.018134018403819892[&support=97.73333333333333][&length_mean=0.018134018403819892,length_median=0.01647508,length_sd=0.009215168980797082,length_hpd95={0.00318883,0.03472089},length_quant_5_95={0.00447048,0.03467319},length_range={0.00272194,0.0579363}])96:0.028651725146443482[&support=95.6][&length_mean=0.028651725146443482,length_median=0.02709449,length_sd=0.014293104745096772,length_hpd95={0.00163734,0.0559104},length_quant_5_95={0.0077312,0.05447861},length_range={0.00010212,0.09027944}],(Phyllosticta_citriasiana_CBS120486:0.003118762773333319[&support=100.0][&length_mean=0.003118762773333319,length_median=0.00368264,length_sd=0.0037383589741275597,length_hpd95={1e-08,0.01143145},length_quant_5_95={1e-08,0.00888218},length_range={1e-08,0.02806248}],Phyllosticta_citriasiana_CGMCC314344:0.0012757349866666817[&support=100.0][&length_mean=0.0012757349866666817,length_median=1e-08,length_sd=0.0023108608284022527,length_hpd95={1e-08,0.00761094},length_quant_5_95={1e-08,0.00759316},length_range={1e-08,0.01199205}],Phyllosticta_citricarpa_CBS127454:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_CGMCC314348:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_CPC27913:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_Gc12:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_LGMF06:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_paracitricarpa_CBS141357:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])79:0.03413396268907564[&support=79.33333333333333][&length_mean=0.03413396268907564,length_median=0.03195984,length_sd=0.018945237271247892,length_hpd95={5e-08,0.06536271},length_quant_5_95={0.00574802,0.06536271},length_range={5e-08,0.16304989}])60:0.04737236682326614[&support=59.599999999999994][&length_mean=0.04737236682326614,length_median=0.04382123,length_sd=0.023865973966112425,length_hpd95={0.01267279,0.09772319},length_quant_5_95={0.01460375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END;