#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 10 source(s): - 'GAPDH_All_Comparative_Boot_01.tre' - 'GAPDH_All_Comparative_Boot_02.tre' - 'GAPDH_All_Comparative_Boot_03.tre' - 'GAPDH_All_Comparative_Boot_04.tre' - 'GAPDH_All_Comparative_Boot_05.tre' - 'GAPDH_All_Comparative_Boot_06.tre' - 'GAPDH_All_Comparative_Boot_07.tre' - 'GAPDH_All_Comparative_Boot_08.tre' - 'GAPDH_All_Comparative_Boot_09.tre' - 'GAPDH_All_Comparative_Boot_10.tre' 25 initial trees discarded/ignored as burn-in from *each* source Total of 750 trees analyzed for summarization: - All trees were treated as unweighted - All trees were treated as rooted - 15 unique taxa across all trees - 35 unique splits out of a total of 17636 splits - 19 unique non-trivial splits counted out of a total of non-trivial 5636 splits Summarized onto consensus tree with minimum clade frequency threshold of 0.5: - Support values expressed as percentages - Edge lengths on target trees set to mean of edge lengths in sources - Support and other summarization annotations added to target trees as metadata - Target tree(s) rerooted using outgroup: 'Diplodia_seriata_DS831' Program Information ------------------- SumTrees 4.4.0 by Jeet Sukumaran and Mark T. Holder DendroPy version : DendroPy 4.4.0 () DendroPy location : C:\Python3\lib\site-packages\dendropy Python version : 3.7.4 (tags/v3.7.4:e09359112e, Jul 8 2019, 19:29:22) [MSC v.1916 32 bit (Intel)] Python executable : C:\Python3\python.exe Python site packages : ['C:\\Python3', 'C:\\Python3\\lib\\site-packages'] Execution Information --------------------- Executed on Dartagnan by desir@Dartagnan Working directory: 'C:\Users\desir\Documents\Google Drive\(2011-2018) - BioGeMM\(2018-2022) - PhD\Mating-type\Phylogenetic Analyses\Multilocus (Comparative Cladograms - all)\GAPDH\Garli' Started at: 2020-08-04 15:37:34.645830 Ended at: 2020-08-04 15:37:41.322694 Total elapsed time: 6.676864 seconds Actual analysis time: 4.544503 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.4.0. Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=15; TAXLABELS Diplodia_seriata_DS831 Phyllosticta_capitalensis_CBS128856 Phyllosticta_capitalensis_Gm33 Phyllosticta_capitalensis_LGMF01 Phyllosticta_citriasiana_CBS120486 Phyllosticta_citriasiana_CGMCC314344 Phyllosticta_citribraziliensis_CBS100098 Phyllosticta_citribraziliensis_LGMF08 Phyllosticta_citricarpa_CBS127454 Phyllosticta_citricarpa_CGMCC314348 Phyllosticta_citricarpa_CPC27913 Phyllosticta_citricarpa_Gc12 Phyllosticta_citricarpa_LGMF06 Phyllosticta_citrichinaensis_CBS130529 Phyllosticta_paracitricarpa_CBS141357 ; END; BEGIN TREES; TREE 1 = [&R] (Diplodia_seriata_DS831:0.3416648742133336[&support=100.0][&length_mean=0.3416648742133336,length_median=0.332090415,length_sd=0.17715117912230208,length_hpd95={0.094551,0.64416118},length_quant_5_95={0.12268293,0.63324123},length_range={0.07928601,1.27456274}],(Phyllosticta_capitalensis_Gm33:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],(Phyllosticta_capitalensis_CBS128856:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_capitalensis_LGMF01:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])94:0.006079181230551627[&support=94.26666666666667][&length_mean=0.006079181230551627,length_median=0.0059486,length_sd=0.0029922153537125275,length_hpd95={0.00142089,0.01189259},length_quant_5_95={0.00152799,0.01181656},length_range={0.00139514,0.01567627}])81:0.03760877739273925[&support=80.80000000000001][&length_mean=0.03760877739273925,length_median=0.037607045,length_sd=0.019448053642319385,length_hpd95={0.00058279,0.06906547},length_quant_5_95={0.00577668,0.06886754},length_range={0.00058279,0.09181815}],(Phyllosticta_citrichinaensis_CBS130529:0.007605989519999973[&support=100.0][&length_mean=0.007605989519999973,length_median=0.00523185,length_sd=0.008523192452600912,length_hpd95={1e-08,0.02356071},length_quant_5_95={1e-08,0.02356071},length_range={1e-08,0.04640226}],((Phyllosticta_citricarpa_CBS127454:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_CGMCC314348:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_CPC27913:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_Gc12:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_LGMF06:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_paracitricarpa_CBS141357:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])99:0.010161181114093958[&support=99.33333333333333][&length_mean=0.010161181114093958,length_median=0.00965264,length_sd=0.004974576200228504,length_hpd95={0.00022024,0.01912825},length_quant_5_95={0.00244599,0.01897182},length_range={0.00013895,0.03230299}],(Phyllosticta_citriasiana_CBS120486:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citriasiana_CGMCC314344:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])98:0.00861298971350613[&support=97.73333333333333][&length_mean=0.00861298971350613,length_median=0.00831437,length_sd=0.004723220956993345,length_hpd95={0.0005366,0.01751192},length_quant_5_95={0.00188189,0.01728826},length_range={7.74e-06,0.02433148}])96:0.01336195350415513[&support=96.26666666666667][&length_mean=0.01336195350415513,length_median=0.012394994999999999,length_sd=0.006751849974021693,length_hpd95={0.00186505,0.02705034},length_quant_5_95={0.00417004,0.02651845},length_range={0.00043509,0.03854155}],(Phyllosticta_citribraziliensis_CBS100098:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citribraziliensis_LGMF08:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])79:0.005318011334459457[&support=78.93333333333334][&length_mean=0.005318011334459457,length_median=0.00472563,length_sd=0.0035017717035028,length_hpd95={0.00021357,0.01205199},length_quant_5_95={0.00114346,0.01201483},length_range={0.00021357,0.02584732}])54:0.04184897106172841[&support=54.0][&length_mean=0.04184897106172841,length_median=0.03958777,length_sd=0.018181863855186803,length_hpd95={0.00673512,0.07289506},length_quant_5_95={0.01399444,0.07065202},length_range={0.00256973,0.10622027}])100:0.0[&support=100.0][&length_mean=0.0,length_median=0.0,length_sd=0.0,length_hpd95={0,0},length_quant_5_95={0,0},length_range={0,0}]; END;