#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 10 source(s): - 'CIA30_CDS_Boot_01.tre' - 'CIA30_CDS_Boot_02.tre' - 'CIA30_CDS_Boot_03.tre' - 'CIA30_CDS_Boot_04.tre' - 'CIA30_CDS_Boot_05.tre' - 'CIA30_CDS_Boot_06.tre' - 'CIA30_CDS_Boot_07.tre' - 'CIA30_CDS_Boot_08.tre' - 'CIA30_CDS_Boot_09.tre' - 'CIA30_CDS_Boot_10.tre' 25 initial trees discarded/ignored as burn-in from *each* source Total of 750 trees analyzed for summarization: - All trees were treated as unweighted - All trees were treated as rooted - 15 unique taxa across all trees - 55 unique splits out of a total of 18496 splits - 39 unique non-trivial splits counted out of a total of non-trivial 6496 splits Summarized onto consensus tree with minimum clade frequency threshold of 0.5: - Support values expressed as percentages - Edge lengths on target trees set to mean of edge lengths in sources - Support and other summarization annotations added to target trees as metadata - Target tree(s) rerooted using outgroup: 'Diplodia_seriata_CBS112555' Program Information ------------------- SumTrees 4.4.0 by Jeet Sukumaran and Mark T. Holder DendroPy version : DendroPy 4.4.0 () DendroPy location : C:\Python3\lib\site-packages\dendropy Python version : 3.7.4 (tags/v3.7.4:e09359112e, Jul 8 2019, 19:29:22) [MSC v.1916 32 bit (Intel)] Python executable : C:\Python3\python.exe Python site packages : ['C:\\Python3', 'C:\\Python3\\lib\\site-packages'] Execution Information --------------------- Executed on Dartagnan by desir@Dartagnan Working directory: 'C:\Users\desir\Documents\Google Drive\(2011-2018) - BioGeMM\(2018-2022) - PhD\Mating-type\Phylogenetic Analyses\Mating genes (Rooted)\CIA30_CDS\Garli' Started at: 2020-03-17 14:08:13.411762 Ended at: 2020-03-17 14:08:18.408909 Total elapsed time: 4.997147 seconds Actual analysis time: 3.361083 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.4.0. Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=15; TAXLABELS Diplodia_seriata_CBS112555 Phyllosticta_capitalensis_CBS128856 Phyllosticta_capitalensis_Gm33 Phyllosticta_capitalensis_LGMF01 Phyllosticta_citriasiana_CBS120486 Phyllosticta_citriasiana_CGMCC314344 Phyllosticta_citribraziliensis_CBS100098 Phyllosticta_citribraziliensis_LGMF08 Phyllosticta_citricarpa_CBS127454 Phyllosticta_citricarpa_CPC27913 Phyllosticta_citricarpa_CGMCC314348 Phyllosticta_citricarpa_Gc12 Phyllosticta_citricarpa_LGMF06 Phyllosticta_citrichinaensis_CBS130529 Phyllosticta_paracitricarpa_CBS141357 ; END; BEGIN TREES; TREE 1 = [&R] (Diplodia_seriata_CBS112555:1.1167621129066683[&support=100.0][&length_mean=1.1167621129066683,length_median=0.897077795,length_sd=3.653298378036089,length_hpd95={0.43747438,1.63990212},length_quant_5_95={0.54195321,1.61039188},length_range={0.35478355,100.0}],(Phyllosticta_capitalensis_CBS128856:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_capitalensis_Gm33:0.0016089004800000021[&support=100.0][&length_mean=0.0016089004800000021,length_median=0.001498915,length_sd=0.0015295178494194538,length_hpd95={1e-08,0.0044884},length_quant_5_95={1e-08,0.00447861},length_range={1e-08,0.00898918}],Phyllosticta_capitalensis_LGMF01:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])95:0.10784090040616241[&support=95.19999999999999][&length_mean=0.10784090040616241,length_median=0.1170274,length_sd=0.05618430219896614,length_hpd95={6e-08,0.19421362},length_quant_5_95={0.01371846,0.1940987},length_range={6e-08,0.3010046}],(Phyllosticta_citriasiana_CBS120486:0.0001429745866666663[&support=100.0][&length_mean=0.0001429745866666663,length_median=1e-08,length_sd=0.0004386407136888937,length_hpd95={1e-08,0.00133351},length_quant_5_95={1e-08,0.00133263},length_range={1e-08,0.0027648}],Phyllosticta_citriasiana_CGMCC314344:0.0007227368266666649[&support=100.0][&length_mean=0.0007227368266666649,length_median=1e-08,length_sd=0.0010843249512295975,length_hpd95={1e-08,0.00276598},length_quant_5_95={1e-08,0.00276416},length_range={1e-08,0.00564756}],(Phyllosticta_citricarpa_CGMCC314348:9.10459066666669e-05[&support=100.0][&length_mean=9.10459066666669e-05,length_median=1e-08,length_sd=0.0003897308083870893,length_hpd95={1e-08,0.00129839},length_quant_5_95={1e-08,0.00129839},length_range={1e-08,0.00292637}],(Phyllosticta_citricarpa_CBS127454:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_Gc12:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_LGMF06:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])66:0.0027223670824949725[&support=66.26666666666667][&length_mean=0.0027223670824949725,length_median=0.00270762,length_sd=0.0014431796117328932,length_hpd95={0.00128773,0.00556947},length_quant_5_95={0.00133127,0.00551277},length_range={4e-08,0.00832451}],(Phyllosticta_citricarpa_CPC27913:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_paracitricarpa_CBS141357:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])61:0.0026595401304347808[&support=61.33333333333333][&length_mean=0.0026595401304347808,length_median=0.002680325,length_sd=0.0015923328367058976,length_hpd95={0.0012663,0.00559382},length_quant_5_95={0.00131239,0.00555166},length_range={0.00062097,0.00848045}])78:0.003701487037671237[&support=77.86666666666666][&length_mean=0.003701487037671237,length_median=0.0032088050000000003,length_sd=0.0020181386633650934,length_hpd95={0.00129723,0.0070815},length_quant_5_95={0.00134222,0.0070815},length_range={0.00129723,0.01365491}])76:0.0821170755691769[&support=76.13333333333333][&length_mean=0.0821170755691769,length_median=0.08375374,length_sd=0.024628573568046517,length_hpd95={0.0300447,0.13068191},length_quant_5_95={0.03857023,0.12029463},length_range={4.621e-05,0.17447832}],(Phyllosticta_citrichinaensis_CBS130529:0.03542073021333331[&support=100.0][&length_mean=0.03542073021333331,length_median=0.0345626,length_sd=0.012718550597875477,length_hpd95={0.01298392,0.06378695},length_quant_5_95={0.01561093,0.05771955},length_range={1e-08,0.07405201}],(Phyllosticta_citribraziliensis_CBS100098:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citribraziliensis_LGMF08:0.0009408784800000058[&support=100.0][&length_mean=0.0009408784800000058,length_median=0.00024291,length_sd=0.00111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END;