#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 10 source(s): - 'APN2_CDS_Boot_01.tre' - 'APN2_CDS_Boot_02.tre' - 'APN2_CDS_Boot_03.tre' - 'APN2_CDS_Boot_04.tre' - 'APN2_CDS_Boot_05.tre' - 'APN2_CDS_Boot_06.tre' - 'APN2_CDS_Boot_07.tre' - 'APN2_CDS_Boot_08.tre' - 'APN2_CDS_Boot_09.tre' - 'APN2_CDS_Boot_10.tre' 25 initial trees discarded/ignored as burn-in from *each* source Total of 750 trees analyzed for summarization: - All trees were treated as unweighted - All trees were treated as rooted - 14 unique taxa across all trees - 33 unique splits out of a total of 16932 splits - 18 unique non-trivial splits counted out of a total of non-trivial 5682 splits Summarized onto consensus tree with minimum clade frequency threshold of 0.5: - Support values expressed as percentages - Edge lengths on target trees set to mean of edge lengths in sources - Support and other summarization annotations added to target trees as metadata - Target tree(s) rerooted using outgroup: 'Diplodia_seriata_CBS112555' Program Information ------------------- SumTrees 4.4.0 by Jeet Sukumaran and Mark T. Holder DendroPy version : DendroPy 4.4.0 () DendroPy location : C:\Python3\lib\site-packages\dendropy Python version : 3.7.4 (tags/v3.7.4:e09359112e, Jul 8 2019, 19:29:22) [MSC v.1916 32 bit (Intel)] Python executable : C:\Python3\python.exe Python site packages : ['C:\\Python3', 'C:\\Python3\\lib\\site-packages'] Execution Information --------------------- Executed on Dartagnan by desir@Dartagnan Working directory: 'C:\Users\desir\Documents\Google Drive\(2011-2018) - BioGeMM\(2018-2022) - PhD\Mating-type\Phylogenetic Analyses\Mating genes (Rooted)\APN2_CDS\Garli' Started at: 2020-03-17 14:07:31.622859 Ended at: 2020-03-17 14:07:36.010347 Total elapsed time: 4.387488 seconds Actual analysis time: 2.864359 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.4.0. Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=14; TAXLABELS Diplodia_seriata_CBS112555 Phyllosticta_capitalensis_CBS128856 Phyllosticta_capitalensis_LGMF01 Phyllosticta_citriasiana_CBS120486 Phyllosticta_citriasiana_CGMCC314344 Phyllosticta_citribraziliensis_CBS100098 Phyllosticta_citribraziliensis_LGMF08 Phyllosticta_citricarpa_CBS127454 Phyllosticta_citricarpa_CPC27913 Phyllosticta_citricarpa_CGMCC314348 Phyllosticta_citricarpa_Gc12 Phyllosticta_citricarpa_LGMF06 Phyllosticta_citrichinaensis_CBS130529 Phyllosticta_paracitricarpa_CBS141357 ; END; BEGIN TREES; TREE 1 = [&R] (Diplodia_seriata_CBS112555:0.6543914244933331[&support=100.0][&length_mean=0.6543914244933331,length_median=0.6317291,length_sd=0.11332902124846962,length_hpd95={0.47911989,0.89316729},length_quant_5_95={0.50328683,0.86931335},length_range={0.43272154,1.19670088}],(Phyllosticta_capitalensis_CBS128856:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_capitalensis_LGMF01:0.0010520986133333349[&support=100.0][&length_mean=0.0010520986133333349,length_median=0.00102154,length_sd=0.0007037823117012035,length_hpd95={1e-08,0.00207959},length_quant_5_95={1e-08,0.00207866},length_range={1e-08,0.00367449}])100:0.14658421315086775[&support=99.86666666666667][&length_mean=0.14658421315086775,length_median=0.14036744,length_sd=0.037386536993945486,length_hpd95={0.08052908,0.22101195},length_quant_5_95={0.08975204,0.21271646},length_range={0.052507,0.24634617}],((Phyllosticta_citrichinaensis_CBS130529:0.03682700450666673[&support=100.0][&length_mean=0.03682700450666673,length_median=0.03770684,length_sd=0.008698114003538357,length_hpd95={0.02333445,0.05267768},length_quant_5_95={0.02514311,0.04795712},length_range={1e-08,0.05930261}],(Phyllosticta_citribraziliensis_CBS100098:0.005192056573333328[&support=100.0][&length_mean=0.005192056573333328,length_median=0.0051445250000000005,length_sd=0.00214200064747164,length_hpd95={0.00124099,0.00938013},length_quant_5_95={0.00176414,0.00893887},length_range={1e-08,0.01250607}],Phyllosticta_citribraziliensis_LGMF08:0.008203601586666665[&support=100.0][&length_mean=0.008203601586666665,length_median=0.008107264999999999,length_sd=0.002312369794994581,length_hpd95={0.00433168,0.01369237},length_quant_5_95={0.00461486,0.01203734},length_range={0.00197966,0.01467953}])99:0.02220724426075268[&support=99.2][&length_mean=0.02220724426075268,length_median=0.021987239999999998,length_sd=0.00449853023362973,length_hpd95={0.01349491,0.03091708},length_quant_5_95={0.01468068,0.02988514},length_range={0.01047147,0.03510139}])95:0.06835721511888117[&support=95.33333333333334][&length_mean=0.06835721511888117,length_median=0.0691788,length_sd=0.011005668092498557,length_hpd95={0.04847311,0.08902038},length_quant_5_95={0.04965777,0.08497614},length_range={0.02410135,0.11321695}],((Phyllosticta_citriasiana_CBS120486:0.0008516928133333359[&support=100.0][&length_mean=0.0008516928133333359,length_median=0.00084195,length_sd=0.0007160694332208793,length_hpd95={1e-08,0.00201092},length_quant_5_95={1e-08,0.00200927},length_range={1e-08,0.00402908}],Phyllosticta_citriasiana_CGMCC314344:0.002093003320000002[&support=100.0][&length_mean=0.002093003320000002,length_median=0.002014545,length_sd=0.0010924522780442407,length_hpd95={0.00047177,0.00426137},length_quant_5_95={0.00050443,0.00409405},length_range={1e-08,0.00598816}])99:0.01404646420698925[&support=99.2][&length_mean=0.01404646420698925,length_median=0.01401348,length_sd=0.003220163418866139,length_hpd95={0.00602276,0.01922938},length_quant_5_95={0.00864479,0.01919481},length_range={0.00563908,0.02430014}],(Phyllosticta_citricarpa_CBS127454:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_CGMCC314348:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_Gc12:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_LGMF06:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],(Phyllosticta_citricarpa_CPC27913:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_paracitricarpa_CBS141357:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])62:0.00081327576923077[&support=62.4][&length_mean=0.00081327576923077,length_median=0.00050735,length_sd=0.00042328475769035464,length_hpd95={0.00048941,0.00152771},length_quant_5_95={0.00049308,0.00152764},length_range={0.00048941,0.00253651}])95:0.015259405378151264[&support=95.19999999999999][&length_mean=0.015259405378151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END;