#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 10 source(s): - 'MAT1-2-1_CDS_All_Comparative_Boot_01.tre' - 'MAT1-2-1_CDS_All_Comparative_Boot_02.tre' - 'MAT1-2-1_CDS_All_Comparative_Boot_03.tre' - 'MAT1-2-1_CDS_All_Comparative_Boot_04.tre' - 'MAT1-2-1_CDS_All_Comparative_Boot_05.tre' - 'MAT1-2-1_CDS_All_Comparative_Boot_06.tre' - 'MAT1-2-1_CDS_All_Comparative_Boot_07.tre' - 'MAT1-2-1_CDS_All_Comparative_Boot_08.tre' - 'MAT1-2-1_CDS_All_Comparative_Boot_09.tre' - 'MAT1-2-1_CDS_All_Comparative_Boot_10.tre' 25 initial trees discarded/ignored as burn-in from *each* source Total of 750 trees analyzed for summarization: - All trees were treated as unweighted - All trees were treated as rooted - 11 unique taxa across all trees - 19 unique splits out of a total of 12224 splits - 7 unique non-trivial splits counted out of a total of non-trivial 3224 splits Summarized onto consensus tree with minimum clade frequency threshold of 0.5: - Support values expressed as percentages - Edge lengths on target trees set to mean of edge lengths in sources - Support and other summarization annotations added to target trees as metadata - Target tree(s) rerooted using outgroup: 'Diplodia_seriata_CBS112555' Program Information ------------------- SumTrees 4.4.0 by Jeet Sukumaran and Mark T. Holder DendroPy version : DendroPy 4.4.0 () DendroPy location : C:\Python3\lib\site-packages\dendropy Python version : 3.7.4 (tags/v3.7.4:e09359112e, Jul 8 2019, 19:29:22) [MSC v.1916 32 bit (Intel)] Python executable : C:\Python3\python.exe Python site packages : ['C:\\Python3', 'C:\\Python3\\lib\\site-packages'] Execution Information --------------------- Executed on Dartagnan by desir@Dartagnan Working directory: 'C:\Users\desir\Documents\Google Drive\(2011-2018) - BioGeMM\(2018-2022) - PhD\Mating-type\Phylogenetic Analyses\Mating genes (Rooted)\MAT1-2-1_CDS\All strains\Garli' Started at: 2020-08-04 15:25:17.736822 Ended at: 2020-08-04 15:25:22.905310 Total elapsed time: 5.168488 seconds Actual analysis time: 3.24146 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.4.0. Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=11; TAXLABELS Diplodia_seriata_CBS112555 Phyllosticta_capitalensis_CBS128856 Phyllosticta_capitalensis_Gm33 Phyllosticta_capitalensis_LGMF01 Phyllosticta_citriasiana_CGMCC314344 Phyllosticta_citricarpa_CBS127454 Phyllosticta_citricarpa_CPC27913 Phyllosticta_citricarpa_Gc12 Phyllosticta_citricarpa_LGMF06 Phyllosticta_citrichinaensis_CBS130529 Phyllosticta_paracitricarpa_CBS141357 ; END; BEGIN TREES; TREE 1 = [&R] (Diplodia_seriata_CBS112555:1.0417517925066675[&support=100.0][&length_mean=1.0417517925066675,length_median=1.0049092700000002,length_sd=0.22287879786042894,length_hpd95={0.71313958,1.53653217},length_quant_5_95={0.76697237,1.45170463},length_range={0.60673494,2.55166158}],(Phyllosticta_citrichinaensis_CBS130529:0.08522808834666672[&support=100.0][&length_mean=0.08522808834666672,length_median=0.08480984,length_sd=0.013858244088671288,length_hpd95={0.06142602,0.10975776},length_quant_5_95={0.06450575,0.10552915},length_range={1e-08,0.1240414}],(Phyllosticta_citriasiana_CGMCC314344:0.006357627266666667[&support=100.0][&length_mean=0.006357627266666667,length_median=0.00626344,length_sd=0.0024914937588396873,length_hpd95={0.0013267,0.01078815},length_quant_5_95={0.00231583,0.01056205},length_range={1e-08,0.01597546}],(Phyllosticta_citricarpa_CBS127454:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_CPC27913:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_Gc12:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_LGMF06:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_paracitricarpa_CBS141357:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])97:0.004211646799450551[&support=97.06666666666666][&length_mean=0.004211646799450551,length_median=0.00392303,length_sd=0.0020869281077554682,length_hpd95={0.00036221,0.00790559},length_quant_5_95={0.00132408,0.00790336},length_range={0.00036221,0.0120645}])100:0.07427324949333333[&support=100.0][&length_mean=0.07427324949333333,length_median=0.07340562,length_sd=0.01341196255447901,length_hpd95={0.04867337,0.10113279},length_quant_5_95={0.05345536,0.09813208},length_range={0.03481459,0.12437425}])100:0.18987808417112276[&support=99.73333333333333][&length_mean=0.18987808417112276,length_median=0.18304651,length_sd=0.0490638495307859,length_hpd95={0.10157517,0.28399255},length_quant_5_95={0.12060883,0.27292574},length_range={0.07691615,0.43226827}],(Phyllosticta_capitalensis_CBS128856:0.0008838973066666727[&support=100.0][&length_mean=0.0008838973066666727,length_median=0.00071407,length_sd=0.0010451342060097438,length_hpd95={1e-08,0.00288883},length_quant_5_95={1e-08,0.00288845},length_range={1e-08,0.005636}],Phyllosticta_capitalensis_Gm33:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_capitalensis_LGMF01:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])99:0.12687609950335574[&support=99.33333333333333][&length_mean=0.12687609950335574,length_median=0.12502097,length_sd=0.042028243943970686,length_hpd95={0.04663215,0.20885073},length_quant_5_95={0.06073803,0.19415422},length_range={0.00946087,0.38093181}])100:0.0[&support=100.0][&length_mean=0.0,length_median=0.0,length_sd=0.0,length_hpd95={0,0},length_quant_5_95={0,0},length_range={0,0}]; END;