#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 10 source(s): - 'PIM_CDS_Boot_01.tre' - 'PIM_CDS_Boot_02.tre' - 'PIM_CDS_Boot_03.tre' - 'PIM_CDS_Boot_04.tre' - 'PIM_CDS_Boot_05.tre' - 'PIM_CDS_Boot_06.tre' - 'PIM_CDS_Boot_07.tre' - 'PIM_CDS_Boot_08.tre' - 'PIM_CDS_Boot_09.tre' - 'PIM_CDS_Boot_10.tre' 25 initial trees discarded/ignored as burn-in from *each* source Total of 750 trees analyzed for summarization: - All trees were treated as unweighted - All trees were treated as rooted - 15 unique taxa across all trees - 28 unique splits out of a total of 18952 splits - 12 unique non-trivial splits counted out of a total of non-trivial 6952 splits Summarized onto consensus tree with minimum clade frequency threshold of 0.5: - Support values expressed as percentages - Edge lengths on target trees set to mean of edge lengths in sources - Support and other summarization annotations added to target trees as metadata - Target tree(s) rerooted using outgroup: 'Diplodia_seriata_CBS112555' Program Information ------------------- SumTrees 4.4.0 by Jeet Sukumaran and Mark T. Holder DendroPy version : DendroPy 4.4.0 () DendroPy location : C:\Python3\lib\site-packages\dendropy Python version : 3.7.4 (tags/v3.7.4:e09359112e, Jul 8 2019, 19:29:22) [MSC v.1916 32 bit (Intel)] Python executable : C:\Python3\python.exe Python site packages : ['C:\\Python3', 'C:\\Python3\\lib\\site-packages'] Execution Information --------------------- Executed on Dartagnan by desir@Dartagnan Working directory: 'C:\Users\desir\Documents\Google Drive\(2011-2018) - BioGeMM\(2018-2022) - PhD\Mating-type\Phylogenetic Analyses\Mating genes (Rooted)\PIM_CDS\Garli' Started at: 2020-03-17 14:17:34.511504 Ended at: 2020-03-17 14:17:38.915982 Total elapsed time: 4.404478 seconds Actual analysis time: 2.814388 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.4.0. Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=15; TAXLABELS Diplodia_seriata_CBS112555 Phyllosticta_capitalensis_CBS128856 Phyllosticta_capitalensis_Gm33 Phyllosticta_capitalensis_LGMF01 Phyllosticta_citriasiana_CBS120486 Phyllosticta_citriasiana_CGMCC314344 Phyllosticta_citribraziliensis_CBS100098 Phyllosticta_citribraziliensis_LGMF08 Phyllosticta_citricarpa_CBS127454 Phyllosticta_citricarpa_CPC27913 Phyllosticta_citricarpa_CGMCC314348 Phyllosticta_citricarpa_Gc12 Phyllosticta_citricarpa_LGMF06 Phyllosticta_citrichinaensis_CBS130529 Phyllosticta_paracitricarpa_CBS141357 ; END; BEGIN TREES; TREE 1 = [&R] (Diplodia_seriata_CBS112555:0.5892118604666662[&support=100.0][&length_mean=0.5892118604666662,length_median=0.582663495,length_sd=0.06484441669132088,length_hpd95={0.46434897,0.71890248},length_quant_5_95={0.49153291,0.69987161},length_range={0.43348899,0.81347252}],((Phyllosticta_capitalensis_CBS128856:0.000392649026666665[&support=100.0][&length_mean=0.000392649026666665,length_median=0.00022282,length_sd=0.00050383640005225,length_hpd95={1e-08,0.00145972},length_quant_5_95={1e-08,0.00145668},length_range={1e-08,0.00275269}],(Phyllosticta_capitalensis_Gm33:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_capitalensis_LGMF01:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])64:0.0009856439085239087[&support=64.13333333333333][&length_mean=0.0009856439085239087,length_median=0.00076926,length_sd=0.0005530435495628028,length_hpd95={0.00041323,0.00207073},length_quant_5_95={0.00048086,0.0020044},length_range={0.00010894,0.00357238}])100:0.22407715821333327[&support=100.0][&length_mean=0.22407715821333327,length_median=0.22183288,length_sd=0.03178280920047366,length_hpd95={0.16352017,0.28256386},length_quant_5_95={0.17518537,0.27813113},length_range={0.1327215,0.36769704}],(Phyllosticta_citrichinaensis_CBS130529:0.09788075529333325[&support=100.0][&length_mean=0.09788075529333325,length_median=0.098644255,length_sd=0.012815027611601635,length_hpd95={0.07649002,0.12140286},length_quant_5_95={0.07821649,0.11674968},length_range={0.02996649,0.13610464}],(Phyllosticta_citriasiana_CGMCC314344:0.005241221826666666[&support=100.0][&length_mean=0.005241221826666666,length_median=0.0051243,length_sd=0.0019471891270775555,length_hpd95={0.00193759,0.00924748},length_quant_5_95={0.00214084,0.00864574},length_range={1e-08,0.01204858}],(Phyllosticta_citricarpa_CBS127454:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_Gc12:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_citricarpa_LGMF06:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],(Phyllosticta_citricarpa_CPC27913:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}],Phyllosticta_paracitricarpa_CBS141357:9.999999999999917e-09[&support=100.0][&length_mean=9.999999999999917e-09,length_median=1e-08,length_sd=8.610842338458107e-16,length_hpd95={1e-08,1e-08},length_quant_5_95={1e-08,1e-08},length_range={1e-08,1e-08}])63:0.0007270905520169855[&support=62.8][&length_mean=0.0007270905520169855,length_median=0.00047829,length_sd=0.00036522437683043994,length_hpd95={0.00044871,0.00142338},length_quant_5_95={0.00046214,0.00142283},length_range={0.00044871,0.00284054}])100:0.006936917626666666[&support=100.0][&length_mean=0.006936917626666666,length_median=0.006837355,length_sd=0.0021225978494114933,length_hpd95={0.00288118,0.01114776},length_quant_5_95={0.00362442,0.01068356},length_range={0.00103881,0.01346442}])100:0.08245152077333334[&support=100.0][&length_mean=0.08245152077333334,length_median=0.08176041,length_sd=0.010752708793024899,length_hpd95={0.06404228,0.10424975},length_quant_5_95={0.06551398,0.101032},length_range={0.04982823,0.11297465}])97:0.08472654041095898[&support=97.33333333333334][&length_mean=0.08472654041095898,length_median=0.08491171,length_sd=0.022200327766516245,length_hpd95={0.04353258,0.12641826},length_quant_5_95={0.04899227,0.12175511},length_range={0.02039315,0.15511844}])100:0.3497294627733333[&support=100.0][&length_mean=0.3497294627733333,length_median=0.349181295,length_sd=0.04895115511054327,length_hpd95={0.25891437,0.44632884},length_quant_5_95={0.27332374,0.43062333},length_range={0.22207087,0.56057708}],((Phyllosticta_citriasiana_CBS120486:0.020483191853333315[&support=100.0][&length_mean=0.020483191853333315,length_median=0.020346259999999998,length_sd=0.003911757676071554,length_hpd95={0.01308432,0.02866812},length_quant_5_95={0.01422451,0.02741295},length_range={0.0075967,0.0332847}],Phyllosticta_citricarpa_CGMCC314348:0.020619160360000013[&support=100.0][&length_mean=0.020619160360000013,length_median=0.020349810000000003,length_sd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END;