#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 10 source(s): - 'GAPDH_Restricted_Boot_01.tre' - 'GAPDH_Restricted_Boot_02.tre' - 'GAPDH_Restricted_Boot_03.tre' - 'GAPDH_Restricted_Boot_04.tre' - 'GAPDH_Restricted_Boot_05.tre' - 'GAPDH_Restricted_Boot_06.tre' - 'GAPDH_Restricted_Boot_07.tre' - 'GAPDH_Restricted_Boot_08.tre' - 'GAPDH_Restricted_Boot_09.tre' - 'GAPDH_Restricted_Boot_10.tre' 25 initial trees discarded/ignored as burn-in from *each* source Total of 750 trees analyzed for summarization: - All trees were treated as unweighted - All trees were treated as rooted - 28 unique taxa across all trees - 200 unique splits out of a total of 38866 splits - 171 unique non-trivial splits counted out of a total of non-trivial 17116 splits Summarized onto consensus tree with minimum clade frequency threshold of 0.5: - Support values expressed as percentages - Edge lengths on target trees set to mean of edge lengths in sources - Support and other summarization annotations added to target trees as metadata - Target tree(s) rerooted using outgroup: 'Coniosporium_apollinis_CBS100218' Program Information ------------------- SumTrees 4.4.0 by Jeet Sukumaran and Mark T. Holder DendroPy version : DendroPy 4.4.0 () DendroPy location : C:\Python3\lib\site-packages\dendropy Python version : 3.7.4 (tags/v3.7.4:e09359112e, Jul 8 2019, 19:29:22) [MSC v.1916 32 bit (Intel)] Python executable : C:\Python3\python.exe Python site packages : ['C:\\Python3', 'C:\\Python3\\lib\\site-packages'] Execution Information --------------------- Executed on Dartagnan by desir@Dartagnan Working directory: 'C:\Users\desir\Documents\Google Drive\(2011-2018) - BioGeMM\(2018-2022) - PhD\Mating-type\Phylogenetic Analyses\Ancestral State Reconstruction (Restricted, No Citrimaxima)\GAPDH\Garli' Started at: 2020-08-05 14:28:05.382436 Ended at: 2020-08-05 14:28:16.460113 Total elapsed time: 11.077677 seconds Actual analysis time: 6.930386 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.4.0. Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=28; TAXLABELS Aplosporella_prunicola_CBS121167 Botryosphaeria_dothidea Botryosphaeria_kuwatsukai_CBS135219 Coniosporium_apollinis_CBS100218 Diplodia_corticola_CBS112549 Diplodia_sapinea_CBS138184 Diplodia_scrobiculata_CBS139796 Diplodia_seriata_DS831 Lasiodiplodia_gonubiensis_CBS115812 Lasiodiplodia_pseudotheobromae_CBS116459 Lasiodiplodia_theobromae_CBS_164_96 Macrophomina_phaseolina_MS6 Melanops_tulasnei_CBS116805 Neofusicoccum_cordaticola_CBS123634 Neofusicoccum_kwambonambiense_CBS123639 Neofusicoccum_parvum_UCRNP2 Neofusicoccum_ribis_CBS115475 Neofusicoccum_umdonicola_CBS123644 Neoscytalidium_dimidiatum_UM880 Phyllosticta_ampelicida_ATCC200578 Phyllosticta_capitalensis_CBS128856 Phyllosticta_citriasiana_CBS120486 Phyllosticta_citribraziliensis_CBS100098 Phyllosticta_citricarpa_CBS127454 Phyllosticta_paracapitalensis_CBS141353 Phyllosticta_paracitricarpa_CBS141357 Phyllosticta_rubella_CBS111635 Saccharata_proteae_CBS121410 ; END; BEGIN TREES; TREE 1 = [&R] 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END;