#NEXUS [written Fri Jun 15 11:03:19 EDT 2012 by Mesquite version 2.75 (build 564) at Robert-Baratheons-MacBook.local/10.0.1.25] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=68; TAXLABELS N_T S_L_A Callichthyinae Aspidoras_fuscoguttatus A._rochai A._albater A._aff._poecilus A._poecilus A._microgalaeus A._belenos A._virgulatus Brochis_splendens B._multiradiatus B._britskii Corydoras_rabauti C._eques C._zygatus C._aeneus C._hastatus C._pygmaeus C._vittatus Corydoras_acutus C._septentrionalis C._ellisae C._stenocephalus C._macropterus C._barbatus_I C._barbatus_II Corydoras_sp._A C._undulatus C._gracilis C._nanus C._napoensis C._elegans C._panda C._xinguensis C._punctatus C._reticulatus C._bicolor C._trilineatus C._bondi C._osteocarus C._polystictus C._ephippifer C._julii C._haraldschultzi Corydoras_maculifer Corydoras_n._sp. C._garbei C._leucomelas C._ornatus C._paleatus C._flaveolus C._arcuatus C._baderi C._habrosus C._axelrodi C._cochui C._nattereri C._ehrhardti C._prionotus C._aurofrenatus C._metae C._atropersonatus C._agassizi C._ambiacus C._loretoensis C._guapore ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=83; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3"; MATRIX N_T 000000000000000000000000000000000000-000-00?0000000000-000000000000000-000000000000 S_L_A 0000000?0000-0000000000000000?00?0000000-0000-000000100000000000000000-000000000000 Callichthyinae 00110000-00000011000000000010000?00000000000000000000000000000000000110000000000000 Aspidoras_fuscoguttatus 01111101010020211011100111011201011001100100111111010100000100000201110000000001010 A._rochai 01111101010020211011110111011201011001110100111111010100000100000201110000000001010 A._albater 01111101010020211011110111011201011001110100111111010100000100000201110000000001010 A._aff._poecilus 01111101010020211011100111021201011001100110111111010100000100000201110000000001010 A._poecilus 01111101010020211011110111011201011001100110111111010100000100000201110000000001010 A._microgalaeus 01111101010020211011110110011201111001100110110111010100000100000201110000000001010 A._belenos 01111101011020211011110111011201011001100110110111010100000100000201110000000001010 A._virgulatus 01111101010020211011110110111201011001110100101111010101000100001201110000100001110 Brochis_splendens 00001100101021322111111110121201011101200001100111010100111111110001111000000001010 B._multiradiatus 00001100101021322111111110121201011101200001100111000100111111110001111000000001010 B._britskii 00001110101021322111110110121201010101200011100111010100111111110001111000000001010 Corydoras_rabauti 11110110101120321111111110021201111101200011100111111100011101110001111001000001010 C._eques 11110100101120322111101110021201111001200011100111111100011101110001111000000001010 C._zygatus 11110100101120321111111110121101010001200010100111111100001101110001111001000001010 C._aeneus 1101?110001120321111111110121201111001100110100111?1?100000101000001111000000001010 C._hastatus 11010100001120122211110110011-11110001100000100111110100000101010001110000111001011 C._pygmaeus 11110110000120122211100110011-11111001200001100111111100000101000001110000111001011 C._vittatus 00101210000020222111100110021201?11021211000111111011100000111000101110000000011010 Corydoras_acutus 00100100000020222111110110021101?11021211000110111011100000101000001110000000011010 C._septentrionalis 00100110001020222111110110121101?11021?11000110111011100000101000001110000000011010 C._ellisae 00100100001020222111110110021101011021210000110111010100000101000001110000000011010 C._stenocephalus 00100210001020222011100110121101011021211000110111010100000101000001110000000011010 C._macropterus 01100100000020211011110110011201111001111110110111010101000100001101110000000011110 C._barbatus_I 0010?100000020211011010110011201111001?11000110111010101000100001101110100000011110 C._barbatus_II 0010010000?0202120110101100?1201111001110000110111010101000100001001110100000011110 Corydoras_sp._A 00100100001020211011110110121201111001210000111111010101000100001101110100000011110 C._undulatus 11111100001000221111111111021101110001200011100111111100000101000001110000000001010 C._gracilis 11112110001000221111110110111101110001100011100111010100000101000001110010000001010 C._nanus 11010100000120221111111110011101111001100010100111111100000101010001110000000001010 C._napoensis 11110100001120221111111110111101111001100010100111111100000101000001110000000001010 C._elegans 11110100?0112022111111111012110111100110001010?111111100000101010001110000000001010 C._panda 11110100001100121011110110021201010001200001100111110100000101000001220000000101010 C._xinguensis 11110100001110221011110110121201010001200000100111110100000101000001210000000001010 C._punctatus 11110100001120221011111110121201011001200000100111111100000101000001220000000001010 C._reticulatus 10110100001120222011110110021201011011200000100111010110000101000001111000000001010 C._bicolor 11110100001120222011110110121101010001110000100111110110000101000001220000000001010 C._trilineatus 11110100001100222011110110121101010001100001100111110100000101000001220000000001010 C._bondi 11110100001120222011111110121201011001100000100111?10100000101000001210000100001010 C._osteocarus 11010100001020222011111110121101011001100100100111110100000101000001210000?00001010 C._polystictus 11110100001120222011111110021201011001200000100111110100000101000001210000000001010 C._ephippifer 1101011000112022201111111012120101100110000010011111?100000101000001220000000001010 C._julii 11111110001120222011110110121101010001100000100111110100000101000001220000000001010 C._haraldschultzi 11110100001120222011111110121101011001200000100111110100000101000001220000000001010 Corydoras_maculifer 11110100001120222?11111110121201011001?00000100111010100000101000001210000000001010 Corydoras_n._sp. 00111110000120211111011110011201011011200110100111010100000101000011110000000001010 C._garbei 01101100001000211111101110021201010001200111100111000100000101000021111000000001010 C._leucomelas 11110100001120221011111110121201111001100000100111110100011101000001220000000001010 C._ornatus 00100100001020221211111110021201011011100001100111010110000101000001111000000001010 C._paleatus 11110100101020221011101111121201010001200000101111010110000101000001211000000001010 C._flaveolus 11111210001100211011110111021101010001100000100111010100000101000001210000000001010 C._arcuatus 01110110001100222011111110121101010001100001100111010100001101000001110010000001010 C._baderi 01110100001100222011111110121101010001100001100111110100000101000001210000100001010 C._habrosus 11010110001110222011110110121101010001110000100111111100000101000001211000000101010 C._axelrodi 11010110001120222011111110121201011001100000100111110100000101000001210000000001010 C._cochui 11110110001120222011111110121101011001100000100111110100000101000001220000000001010 C._nattereri 11110110001120221011111110121201010001100010100111110100000101000001210000100001010 C._ehrhardti 11110100001120221011111110121201011001?0?010100111010100000101000001210000000001010 C._prionotus 00101100001020221011110110?11101011001110010110111010100000101000101110000100001110 C._aurofrenatus 00101110001120222111110110021201011021211000110111010100000101000101110000000011010 C._metae 01110100001120222011110110021101011001200000100111110100000101000001220000000001010 C._atropersonatus 01110100001120222011110110121201011001100000100111110110000101000001220000000001010 C._agassizi 00100100001120222211101110021201011011100000100111010100000101000001110000000001010 C._ambiacus 11110100001120222011111110121201011001100000100111110100000101000001220000000001010 C._loretoensis 11110110001120222011111110121201011001100100100111010110000101000001220000000001010 C._guapore 11110100101120222111111100021201111001100000100111010100000101000001110000000101010 ; END; BEGIN TREES; Title Trees; LINK Taxa = Taxa; TRANSLATE 1 N_T, 2 S_L_A, 3 Callichthyinae, 4 Aspidoras_fuscoguttatus, 5 A._rochai, 6 A._albater, 7 A._aff._poecilus, 8 A._poecilus, 9 A._microgalaeus, 10 A._belenos, 11 A._virgulatus, 12 Brochis_splendens, 13 B._multiradiatus, 14 B._britskii, 15 Corydoras_rabauti, 16 C._eques, 17 C._zygatus, 18 C._aeneus, 19 C._hastatus, 20 C._pygmaeus, 21 C._vittatus, 22 Corydoras_acutus, 23 C._septentrionalis, 24 C._ellisae, 25 C._stenocephalus, 26 C._macropterus, 27 C._barbatus_I, 28 C._barbatus_II, 29 Corydoras_sp._A, 30 C._undulatus, 31 C._gracilis, 32 C._nanus, 33 C._napoensis, 34 C._elegans, 35 C._panda, 36 C._xinguensis, 37 C._punctatus, 38 C._reticulatus, 39 C._bicolor, 40 C._trilineatus, 41 C._bondi, 42 C._osteocarus, 43 C._polystictus, 44 C._ephippifer, 45 C._julii, 46 C._haraldschultzi, 47 Corydoras_maculifer, 48 Corydoras_n._sp., 49 C._garbei, 50 C._leucomelas, 51 C._ornatus, 52 C._paleatus, 53 C._flaveolus, 54 C._arcuatus, 55 C._baderi, 56 C._habrosus, 57 C._axelrodi, 58 C._cochui, 59 C._nattereri, 60 C._ehrhardti, 61 C._prionotus, 62 C._aurofrenatus, 63 C._metae, 64 C._atropersonatus, 65 C._agassizi, 66 C._ambiacus, 67 C._loretoensis, 68 C._guapore; TREE Figure_24 = (1,2,(3,(((61,(26,(29,(27,28)))),(9,(10,(4,7,8,(5,6,11))))),(48,((65,(51,(24,(22,((23,25),(21,62)))))),(38,(32,33,34,37,41,43,46,47,50,52,59,60,63,66,68,(19,20),(64,67),(42,(44,57)),(58,(45,(39,56))),(36,(35,(40,(54,55)),(53,(31,(30,49))))),(18,(17,(15,16,(14,12,13))))))))))); TREE Figure_25 = (1,2,(3,(((61,(26,(29,(27,28)))),(9,(10,(4,7,8,(5,6,11))))),(48,((65,(51,(24,(22,((23,25),(21,62)))))),(38,(32,33,34,37,41,43,46,47,50,52,59,60,63,66,68,(19,20),(64,67),(42,(44,57)),(58,(45,(39,56))),(18,(17,(15,16,(14,12,13)))),(36,(35,(40,(54,55)),(53,(31,(30,49)))))))))))); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 83; TYPESET * UNTITLED ( CHARACTERS = ) = unord : 1 - 83; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 83; ProbModelSet * UNTITLED ( CHARACTERS = ) = 'Mk1 (est.)' : 1 - 83; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1339772599932; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2151745597934737877; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3517129815052096922; mqVersion 275; checksumv 0 3 2818148232 null getNumChars 83 numChars 83 getNumTaxa 68 numTaxa 68 short true bits 15 states 15 sumSquaresStatesOnly 18720.0 sumSquares 18720.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 335; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1242 867; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 907 800; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2151745597934737877 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1636.1337190336957.3090587696398528338; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 907 800; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 2; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;