#NEXUS [written Sun Jul 01 13:25:44 EDT 2012 by Mesquite version 2.75 (build 566) at Simba.local/10.0.1.39] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=40; TAXLABELS Eimeria_acervulina Eimeria_burdai Eimeria_cahirinensis_NFS Eimeria_cahirinensis_WR Eimeria_callospermophili Eimeria_caviae Eimeria_cf._mivati Eimeria_coecicola Eimeria_exigua Eimeria_flavescens Eimeria_intestinalis Eimeria_irresidua Eimeria_magna Eimeria_maxima Eimeria_mivati Eimeria_myoxi Eimeria_necatrix Eimeria_piriformis Eimeria_ranae Eimeria_sp._ex._Apodemus_agrarius_21617 Eimeria_sp._ex._Apodemus_agrarius_21668 Eimeria_sp._ex._Apodemus_flavicollis_1 Eimeria_sp._ex._Apodemus_flavicollis_12 Eimeria_sp._ex._Apodemus_flavicollis_4 Eimeria_sp._ex._Apodemus_sylvaticus_0850 Eimeria_sp._ex._Apodemus_sylvaticus_0853 Eimeria_sp._ex._Phataginus_tricuspis_1 Eimeria_sp._ex._Phataginus_tricuspis_2 Eimeria_sp._ex._Sorex_araneus_136 Eimeria_tenella Eimeria_vejdovskyi Isospora_hypoleucae Isospora_sp._ex._Apodemus_flavicollis_B13 Isospora_sp._ex._Sylvia_atricapilla_iSAT1 Isospora_sp._ex._Sylvia_atricapilla_iSAT2 Isospora_sp._ex._Sylvia_atricapilla_iSAT3 Isospora_sp._ex._Sylvia_atricapilla_iSAT4 Isospora_sp._ex._Sylvia_atricapilla_iSAT5 Isospora_sp._ex._Talpa_europaea_106 Isospora_sp._ex._Talpa_europaea_218 ; END; BEGIN CHARACTERS; TITLE COI; DIMENSIONS NCHAR=808; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX Eimeria_acervulina -TTTGGTTCAGGTGTTGGTTGGACATTATATCCTCCATTAAGTACATCCTTAATGTCATTATCTCCAACCTCAGTAGATTTAATTGTACTTGGTTTAGCTC Eimeria_burdai ----------------------------------CCTTTAAGTACATCCTTAATGTCACTCTCTCCAACCTCAGTCGATTTAATTGTATTTGGTCTAGCTA Eimeria_cahirinensis_NFS -------------------------------------TTAAGTACATCTCTAATGTCACTGTCCCCAACCTCAGTGGATTTAATCGTATTTGGCTTAGCTA Eimeria_cahirinensis_WR ----------------GGTTGGACACTTTATCCTCCATTAAGTACATCTCTAATGTCACTGTCCCCAACCTCAGTGGATTTAATCGTATTTGGCCTAGCTA Eimeria_callospermophili -------------------------------------------------------------------------------TTAATCGTATTCGGTCTAGCTC Eimeria_caviae ----------------------------------------------------------------------------------------------------- Eimeria_cf._mivati -TTTGGTTCAGGTGTTGGTTGGACACTATACCCTCCATTAAGTACATCTTTAATGTCCTTATCTCCAACTTCAGTAGATTTAATTGTATTTGGTTTAGCTA Eimeria_coecicola ----------------------------------------------------------------------------------------------------- Eimeria_exigua -------------------------------------------------------------------------------------------GGTTTAGCTA Eimeria_flavescens -------------------------------------------------------------------------------------------GGTTTAGCTA Eimeria_intestinalis ----------------------------------------------------------------------TCAGTGGATTTAATTGTGTTTGGTTTAGCTA Eimeria_irresidua ----------------------------------------------TCTCTAATGTCATTATCTCCAACCTCAGTGGATTTAATTGTATTTGGTTTAGCTA Eimeria_magna -------------------------CTTTACCCACCACTAAGTACATCTCTGATGTCACTATCTCCAACCTCAGTTGATTTAATTGTGTTTGGTCTAGCTA Eimeria_maxima -TTTGGTTCAGGTGTTGGTTGGACACTATACCCACCACTAAGTACATCAATGATGTCTTTATCACCAACCTCTGTGGATTTAATTGTATTTGGCCTAGCAC Eimeria_mivati -TTTGGTTCAGGTGTTGGTTGGACACTATACCCYCCATTAAGTACATCTTTAATGTCCTTATCTCCAACTTCAGTAGATTTAATTGTATTTGGTTTAGCTA Eimeria_myoxi ----------------------------------------------------------------------------------------------------- Eimeria_necatrix -TTTGGTTCAGGTGTTGGTTGGACACTTTATCCTCCTTTAAGTACATCACTAATGTCATTATCCCCAACCTCAGTAGATTTAATTGTATTTGGTTTAGCTT Eimeria_piriformis -------------------------CTTTACCCACCACTTAGTACATCTCTAATGTCATTATCTCCAACCTCAGTGGATTTAATTGTCTTTGGTTTAGCTA Eimeria_ranae ----------------------------------------AGTACCTCTTTAATGTCCTTATCTCCAACATCAGTGGACTTAATCGTAATTGGGTTAGCAT Eimeria_sp._ex._Apodemus_agrarius_21617 ----------------------------------CCTTTAAGTACATCCTTAATGTCACTTTCTCCAACCTCAGTGGATTTAATTGTATTTGGTCTAGCTA Eimeria_sp._ex._Apodemus_agrarius_21668 -------------------TGGACACTGTATCCTCCTTTAAGTACATCCTTAATGTCACTTTCTCCAACCTCAGTGGATTTAATTGTATTTGGTCTAGCTA Eimeria_sp._ex._Apodemus_flavicollis_1 -------------------------------CCTCCTTTAAGTACATCCTTAATGTCACTTTCTCCAACCTCAGTGGATTTAATTGTATTTGGTCTAGCTA Eimeria_sp._ex._Apodemus_flavicollis_12 ----------------GGTTGGACACTTTACCCTCCATTAAGTACATCCTTAATGTCATTATCTCCAACCTCAGTAGATTTAATCGTATTTGGATTAGCTC Eimeria_sp._ex._Apodemus_flavicollis_4 ----------------GGTTGGACACTGTATCCTCCTTTAAGTACATCCTTAATGTCACTTTCTCCAACCTCAGTGGATTTAATTGTATTTGGTCTAGCTA Eimeria_sp._ex._Apodemus_sylvaticus_0850 ----------------GGTTGGACACTTTACCCTCCATTAAGTACATCCTTAATGTCATTATCTCCAACCTCAGTAGATTTAATCGTATTTGGATTAGCTA Eimeria_sp._ex._Apodemus_sylvaticus_0853 ----------------------------------CCTTTAAGTACATCCTTAATGTCATTATCTCCAACCTCAGTGGATTTAATTGTATTTGGTCTAGCTA Eimeria_sp._ex._Phataginus_tricuspis_1 -------------------------------CCTCCACTAAGTACATCTCTAATGTCACTGTCTCCAACCTCAGTAGATTTAATTGTATTTGGTTTAGCTA Eimeria_sp._ex._Phataginus_tricuspis_2 -------------------------CTTTATCCTCCACTAAGTACATCTCTAATGTCACTGTCTCCAACCTCAGTAGATTTAATTGTATTTGGTTTAGCTA Eimeria_sp._ex._Sorex_araneus_136 ---------------GGTTGGACACTTTACCCTCCATTAAGTACATCCTTAATGTCACTATCTCCAACTTCAGTGGATCTAATCGTATTTGGATTAGCTAT Eimeria_tenella -TTTGGTTCAGGTGTTGGTTGGACACTTTATCCTCCTTTAAGTACATCATTAATGTCATTATCTCCAACCTCAGTAGATTTAATTGTATTTGGTTTAGCTT Eimeria_vejdovskyi ----------------------------------------------------------------------TCAGTGGATTTAATTGTGTTTGGTTTAGCTA Isospora_hypoleucae ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Apodemus_flavicollis_B13 ----------------------ACACTTTACCCTCCACTAAGTACATCTCTAATGTCACTATCACCAACATCAGTAGATCTAATTGTATTTGGTCTAGCTA Isospora_sp._ex._Sylvia_atricapilla_iSAT1 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT2 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT3 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT4 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT5 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Talpa_europaea_106 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Talpa_europaea_218 ----------------------------------------------------------------------------------------------TTAGCTA Eimeria_acervulina -TATCAGGTATCTCTAGCTTTTTATCCTCTGTTAATTTCTTAACTACAATTGCTGTATTAGGTGTTACAAATGGTGCAAAACCATGGTGTTTATTTACTTG Eimeria_burdai -TTTCTGGTATATCTAGTTTCTTATCTTCTGTAAATTTCTTAAGTACAATTGCTGTACTAGGTGTTACAAATGGTGCTAAACCATGGTGTCTATTCACTTG Eimeria_cahirinensis_NFS -TTTCTGGAATCTCTAGTTTCTTATCCTCTGTAAATTTCTTAACTACAATTGCTGTCTTAGGGGTCGCTAATGGTGCAAAACCATGGTGTTTATTCATTTG Eimeria_cahirinensis_WR -TTTCTGGAATCTCTAGTTTCTTATCTTCTGTAAATTTCTTAACTACAATTGCTGTCTTAGGGGTCGCTAATGGTGCAAAACCATGGTGTTTATTCATTTG Eimeria_callospermophili -TTTCTGGAATCTCTAGTTTCTTATCTTCTGTAAATTTCTTAACTACAATTGCTGTCTTAGGTGTTGCTAATGGTGCAAAACCATGGTGTCTATTCGTTTG Eimeria_caviae ----------------------------------------------------------------------------------------------------- Eimeria_cf._mivati -TTTCAGGTATCTCTAGTTTCCTATCTTCTGTTAATTTCTTAACTACAATTGCTGTTCTAGGTGTAACAAATGGTGCAAAACCGTGGTGTCTATTTACTTG Eimeria_coecicola ---------------------------------------------------------------------------GCAAAACCATGGTGTCTATTCACTTG Eimeria_exigua -TCTCAGGTATTTCTAGTTTCTTATCTTCAGTAAATTTCTTAAGTACAATTGCTGTGTTAGGTGTAACAAATGGTGCAAAACCATGGTGTCTATTCACTTG Eimeria_flavescens -TCTCAGGTATTTCAAGTTTCTTATCTTCAGTTAATTTCTTAAGTACAATTGCTGTGTTAGGTGTAACCAATGGTGCAAAACCATGGTGTCTATTCACTTG Eimeria_intestinalis -TTTCAGGTATTTCTAGTTTCTTATCTTCTGTAAATTTCTTAAGTACAATTGCTGTGCTAGGTGTAACTAATGGTGCAAAACCATGGTGTCTATTCACTTG Eimeria_irresidua -TCTCAGGTATTTCTAGTTTCTTATCTTCAGTAAATTTCTTAAGTACAATCGCTGTGTTAGGTGTAACAAATGGTGCAAAACCATGGTGTCTATTCACTTG Eimeria_magna -TTTCAGGTATTTCTAGTTTCTTATCTTCTGTAAATTTCTTAAGTACAATCGCTGTACTAGGCGTAACTAATGGTGCAAAACCATGGTGTCTATTCACTTG Eimeria_maxima -TATCAGGTATTTCTAGTTTTCTATCCTCTGTTAATTTCCTAACTACAATAGCTGTTCTAGGTGTAACAAATGGTGCAAAACCGTGGTGTCTATTTACTTG Eimeria_mivati -TTTCAGGTATCTCTAGTTTCCTATCTTCTGTTAATTTCTTAACTACAATTGCTGTTCTAGGTGTAACAAATGGTGCCAAACCATGGTGTTTATTTACTTG Eimeria_myoxi ----------------------------------------------------------------------------------------------------- Eimeria_necatrix -TATCTGGTATTTCTAGCTTCTTATCATCTATTAATTTCTTAACTACAATTGCTGTATTAGGTGTTACTAATGGTTCAAAACCATGGTGTCTATTTACTTG Eimeria_piriformis -TCTCAGGTATTTCTAGTTTCTTATCTTCAGTAAATTTCTTAAGTACAATTGCTGTGTTAGGTGTAACCAATGGTGCAAAACCATGGTGTCTATTCACTTG Eimeria_ranae -TTGTTGGTATTTCTAGTTTCTTATCATCTGTAAACTTCTTAAGTACAATTGCTATATTAGGTGTTGCAAATGGTGCTAAACCATGGTGTTTATTTACTTG Eimeria_sp._ex._Apodemus_agrarius_21617 -TTTCTGGTATATCTAGTTTCTTATCTTCTGTAAATTTCTTAAGTACAATTGCTGTATTAGGTGTTACTAATGGTGCTAAACCATGGTGTCTATTCACTTG Eimeria_sp._ex._Apodemus_agrarius_21668 -TTTCTGGTATATCTAGTTTCTTATCTTCTGTTAATTTCTTAAGTACAATTGCTGTACTAGGTGTTACTAATGGTGCAAAACCATGGTGTCTATTCACTTG Eimeria_sp._ex._Apodemus_flavicollis_1 -TTTCTGGTATATCTAGTTTCTTATCTTCTGTAAATTTCTTAAGTACAATTGCTGTATTAGGTGTTACTAATGGTGCTAAACCATGGTGTCTATTCACTTG Eimeria_sp._ex._Apodemus_flavicollis_12 -TCTCTGGTATCTCTAGCTTCTTATCTTCTGTTAATTTCTTAACTACAATTGCTGTTCTAGGTGTAACTAATGGTGCTAAACCATGGTGTCTGTTTATTTG Eimeria_sp._ex._Apodemus_flavicollis_4 -TTTCTGGTATATCTAGTTTCTTATCTTCTGTAAATTTCTTAAGTACAATTGCTGTACTAGGTGTTACTAATGGTGCAAAACCATGGTGTCTATTCACTTG Eimeria_sp._ex._Apodemus_sylvaticus_0850 -TCTCTGGTATCTCTAGCTTCTTATCTTCTGTTAATTTCTTAACTACAATTGCTGTTCTAGGTGTAACTAATGGTGCTAAACCATGGTGTCTGTTTATTTG Eimeria_sp._ex._Apodemus_sylvaticus_0853 -TTTCTGGTATATCTAGTTTCTTATCTTCTGTAAATTTCTTAAGTACAATTGCTGTACTAGGTGTTACTAATGGTGCAAAACCATGGTGTCTATTCACTTG Eimeria_sp._ex._Phataginus_tricuspis_1 -TCTCTGGTATTTCTAGTTTCTTATCTTCTGTTAATTTCTTAAGTACAATTGCTGTTTTAGGTGTCGCTAATGGTGCAAAACCATGGTCTTTATTCATTTG Eimeria_sp._ex._Phataginus_tricuspis_2 -TCTCTGGTATTTCTAGTTTCTTATCTTCTGTTAATTTCTTAAGTACAATTGCTGTTTTAGGTGTCGCTAATGGTGCAAAACCATGGTCTTTATTCATTTG Eimeria_sp._ex._Sorex_araneus_136 CGCTGGTATTTCTAGCTTCTTATCATCTGTTAATTTCTTAAGTACAATTGCTGTTCTAGGTGTAACTAATGGTGCAAAACCATGGTGTTTATTCACTTGGG Eimeria_tenella -TATCTGGTATTTCTAGCTTCTTATCATCTATTAATTTCTTAACTACAATTGCTGTACTAGGTGTTACTAATGGTTCAAAACCATGGTGTCTATTTACTTG Eimeria_vejdovskyi -TTTCAGGTATTTCTAGTTTCTTATCTTCTGTAAATTTCTTAAGTACAATCGCTGTACTAGGCGTAACTAATGGTGCAAAACCATGGTGTCTATTCACTTG Isospora_hypoleucae ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Apodemus_flavicollis_B13 -TTTCTGGTATCTCTAGTTTCTTATCTTCTGTAAATTTCTTAAGTACAATCGCTGTTCTAGGTGTAACTAACGGTGCAAAACCATGGTGTCTATTCACTTG Isospora_sp._ex._Sylvia_atricapilla_iSAT1 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT2 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT3 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT4 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT5 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Talpa_europaea_106 ------------------------TCTTCTGTAAATTTCTTAAGTACAATTGCTGTATTAGGTGTAACTAATGGTGCTAAACCATGGTGTCTATTCACTTG Isospora_sp._ex._Talpa_europaea_218 -TTTCAGGTATTTCTAGTTTCTTATCTTCTGTAAATTTCTTAAGTACAATTGCTGTATTAGGTGTTACTAATGGTGCTAAACCATGGTGTCTATTCACTTG Eimeria_acervulina -GGCTATTGTCTTTACAGCTATTATGCTAATTGTTACACTACCAATTCTTACTGGTGGCTTACTAATGCTAGTATTAGACTTACATCTAAATACTCAATTC Eimeria_burdai -GGCTATTGTATTTACAGCTGTTATGCTTATTGTAACACTTCCAATTCTTACTGGTGGATTATTAATGTTAGTTCTAGACTTACATTTAAATACTCAATTC Eimeria_cahirinensis_NFS -GGCTATTGTATTTACAGCTATTATGTTAATTGGTACACTACCAATTCTTACTGGTGGATTATTAATGCTAGTATTAGACTTACATTTAAATACTCAATTC Eimeria_cahirinensis_WR -GGCTATTGTATTTACAGCTATTATGCTAATTGGTACACTACCAATTCTTACTGGTGGATTATTAATGTTAGTATTAGACTTACATTTAAATACTCAATTC Eimeria_callospermophili -GTCTATTGTATTTACAGCTATTATGCTAATTGGTACACTACCAATTCTTACTGGTGGATTATTAATGTTAGTATTAGACTTACATCTAAATACTCAATTC Eimeria_caviae -----------------------------ATTGTTACACTTCCAATTCTTACTGGTGGATTATTAATGTTAGTACTAGACTTACATTTAAATACTCAATTC Eimeria_cf._mivati -GGCTATTGTTTTCACAGCCATTATGTTAATTGGTACATTACCAATACTTACTGGTGGTTTATTAATGTTAGTATTAGACTTGCATCTAAATACCCAATTC Eimeria_coecicola -GGCTATTGTATTTACAGCTATTATGTTAATTGCAACACTTCCTATTCTAACTGGTGGATTACTAATGTTAGTGTTAGATTTACATCTAAATACTCAGTTC Eimeria_exigua -GGCTATTGTATTTACAGCTATTATGTTAATTACTACACTTCCAATTCTTACTGGTGGATTATTAATGTTAGTATTAGACTTACATCTAAACACTCAATTC Eimeria_flavescens -GGCTATTGTATTTACAGCTATTATGTTAATTGCTACACTTCCAATTCTTACAGGTGCATTATTAATGTTAGTATTAGACTTACATCTTAACACTCAATTC Eimeria_intestinalis -GGCTATTGTATTTACAGCTATTATGTTAATTGGAACACTACCTATTCTAACTGGTGGATTACTAATGCTAGTGTTAGACTTACATTTAAATACTCAATTC Eimeria_irresidua -GGCTATTGTATTTACAGCTATTATGTTAATTGCTACACTTCCAATTCTTACAGGTGGATTATTAATGTTAGTATTAGACTTACATCTAAACACTCAATTC Eimeria_magna -GGCTATTGTATTTACAGCTATTATGTTAATTGGAACACTTCCTATTCTAACTGGTGGACTACTAATGTTAGTGTTAGATTTACATCTAAATACTCAGTTC Eimeria_maxima -GGCTATTGTTTTCACAGCCATTATGTTAATTGGTACATTACCAATACTTACTGGTGGTTTATTAATGTTAGTATTAGACTTACATCTAAATACCCAATTC Eimeria_mivati -GGCTATTGTGTTTACAGCCATTATGTTAATTGGTACACTACCAATTCTTACCGGTGGATTACTAATGCTAGTGTTAGACTTACATCTAAATACTCAATTT Eimeria_myoxi -----------------------------------ACACTTCCAATTCTTACTGGTGGATTATTAATGCTAGTGCTAGACTTACATCTAAATACTCAATTC Eimeria_necatrix -GGCTATTGTATTCACAGCTATTATGTTACTTGGAACACTTCCAATTCTTACAGGTGGATTACTAATGCTGGTACTAGACTTACATCTAAATACTCAATTC Eimeria_piriformis -GGCTATTGTATTTACAGCTATTATGTTAATTGCTACACTTCCAATTCTTACAGGTGGATTATTAATGTTAGTATTAGACTTACATCTTAACACTCAATTC Eimeria_ranae -GGCTGTTGTGTTTACAGCTATTATGTTAATTGGTACATTACCAATTCTTACTGGTGGATTATTAATGTTAGTATTAGATTTACATCTTAATACACAATTT Eimeria_sp._ex._Apodemus_agrarius_21617 -GGCTATTGTATTTACAGCTATTATGCTTATAGTTACACTTCCAATTCTTACTGGTGGATTATTAATGTTAGTATTAGACTTACATTTAAATACTCAATTC Eimeria_sp._ex._Apodemus_agrarius_21668 -GGCTATTGTATTTACAGCTATTATGCTTATTGTTACACTTCCAATTCTTACTGGTGGATTATTAATGTTAGTACTAGACTTACATTTAAATACTCAATTC Eimeria_sp._ex._Apodemus_flavicollis_1 -GGCTATTGTATTTACAGCTATTATGCTTATAGTTACACTTCCAATTCTTACTGGTGGATTATTAATGTTAGTACTAGACTTACATTTAAATACTCAATTC Eimeria_sp._ex._Apodemus_flavicollis_12 -GGCTATTGTCTTTACAGCTATTATGCTAATTGGTACACTACCAATTCTTACTGGTGGATTATTAATGCTAGTATTAGACTTACACCTAAATACTCAATTC Eimeria_sp._ex._Apodemus_flavicollis_4 -GGCTATTGTATTTACAGCTATTATGCTTATTGTTACACTTCCAATACTTACTGGTGGATTATTAATGTTAGTACTAGACTTACATTTAAATACTCAATTC Eimeria_sp._ex._Apodemus_sylvaticus_0850 -GGCTATTGTCTTTACAGCTATTATGCTAATTGGTACACTACCAATTCTTACTGGTGGATTATTAATGCTAGTATTAGACTTACACCTAAATACTCAATTC Eimeria_sp._ex._Apodemus_sylvaticus_0853 -GGCTATTGTATTTACAGCTATTATGCTTATTGTTACACTTCCAATTCTTACTGGTGGATTATTAATGTTAATACTAGACTTACATTTAAATACTCAATTC Eimeria_sp._ex._Phataginus_tricuspis_1 -GGCTATTGTATTTACAGCTATTATGTTAATTGGTACACTTCCAATTCTTACTGGTGGATTATTAATGTTAGTATTAGACTTACATCTGAATACTCAATTC Eimeria_sp._ex._Phataginus_tricuspis_2 -GGCTATTGTATTTACAGCTATTATGTTAATTGGTACACTTCCAATTCTTACTGGTGGATTATTAATGTTAGTATTAGACTTACATCTGAATACTCAATTC Eimeria_sp._ex._Sorex_araneus_136 CTATTGTATTTACAGCTATTATGCTAATTGTTACACTTCCAATTCTTACTGGTGGATTACTAATGTTAGTATTAGACTTACATCTTAATACTCAATTCTAT Eimeria_tenella -GGCTATTGTATTCACAGCTATTATGTTACTTGGAACACTTCCAATTCTTACAGGTGGATTATTAATGCTGGTACTAGACTTACATCTAAATACCCAATTC Eimeria_vejdovskyi -GGCTATTGTATTTACAGCTATTATGTTAATTGTAACACTTCCTATTCTAACTGGCGGATTACTAATGTTAGTGTTAGATTTACATCTAAATACTCAGTTC Isospora_hypoleucae ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Apodemus_flavicollis_B13 -GGCTATTGTATTTACAGCTATTATGTTAATTGTTACACTTCCAATCCTTACAGGTGGATTACTAATGTTAGTATTAGATCTACATCTAAATACTCAATTC Isospora_sp._ex._Sylvia_atricapilla_iSAT1 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT2 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT3 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT4 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT5 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Talpa_europaea_106 -GGCTATTGTATTTACAGCTATCATGTTAATTGTTACACTTCCAATCCTAACTGGTGGCTTACTAATGCTAGTMTTAGACTTACATCTTAATACTCAATTC Isospora_sp._ex._Talpa_europaea_218 -GGCTATTGTATTTACAGCTATCATGTTAATTGTTACACTTCCAATCCTAACTGGTGGCTTACTAATGCTAGTATTAGACTTACATCTTAATACTCAATTC Eimeria_acervulina -TACGATGCTGCTTTTAACGGTGATCCTGTACTATATCAACATCTATTCTGGTTCTTCGGACATCCAGAAGTCTACATTATTATTCTACCTGCTTTCGGTG Eimeria_burdai -TACGATGCCTCATTTAACGGTGATCCAGTACTATACCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTATATATTATTATTTTACCTGCTTTTGGCG Eimeria_cahirinensis_NFS -TACGATGCCGCATTTAATGGTGATCCAGTACTATATCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTCTATATTATTATTCTACCTGCTTTCGGTG Eimeria_cahirinensis_WR -TACGATGCCGCATTTAATGGTGATCCAGTACTATATCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTCTATATTATTATTCTACCTGCTTTCGGTG Eimeria_callospermophili -TACGATGCCGCATTTAATGGTGACCCAGTGCTATATCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTCTATGTTATTATTCTACCTGCGTTTGGTG Eimeria_caviae -TATGATGCCTCATTTAACGGTGATCCAGTACTATATCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTATATATTATTATCTTACCTGCTTTTGGCG Eimeria_cf._mivati -TACGATGCTGCCTTTAATGGTGATCCAGTATTATACCAACACTTATTCTGGTTCTTTGGTCATCCAGAAGTATATATTATTATTTTACCTGCTTTTGGTG Eimeria_coecicola -TACGATGCTTCTTTTAATGGTGATCCAGTACTATATCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTGTATATTATTATCTTACCTGCTTTTGGTG Eimeria_exigua -TACGATGCTTCCTTTAATGGTGATCCAGTACTATATCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTTTATATTATTATTTTACCTGCTTTTGGTG Eimeria_flavescens -TACGATGCTTCCTTTAATGGTGATCCAGTACTATATCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTTTATATTATTATTTTACCTGCTTTTGGTG Eimeria_intestinalis -TTCGATGCTTCTTTTAATGGTGATCCAGTACTATATCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTTTATGTTATTATCTTACCTGCTTTTGGTG Eimeria_irresidua -TACGATGCTTCCTTTAATGGTGATCCAGTATTATATCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTATATATTATTATTTTACCTGCTTTTGGTG Eimeria_magna -TACGATGCTTCTTTTAATGGTGATCCAGTACTATATCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTGTATATTATTATCTTACCTGCTTTTGGTG Eimeria_maxima -TACGATGCTGCCTTTAATGGTGATCCAGTATTATACCAACACTTATTCTGGCTCTTTGGTCATCCAGAAGTATATATAATTATTCTACCTGCTTTTGGTG Eimeria_mivati -TATGATGCTGCCTTTAATGGTGATCCAGTTTTATACCAACATCTTTTCTGGTTCTTTGGACACCCAGAAGTATATATTATTATTTTACCTGCTTTTGGTG Eimeria_myoxi -TACGATGCATCATTTAATGGTGATCCAGTTCTGTATCAACATTTATTCTGGTTCTTCGGACATCCAGAAGTCTATATTATTATTTTACCTGCTTTCGGTG Eimeria_necatrix -TACGATGCCGCTTTTAATGGTGACCCAGTATTATATCAACATCTATTCTGGTTCTTCGGACATCCAGAAGTATATATTATTATTTTACCTGCCTTTGGTG Eimeria_piriformis -TACGATGCTTCCTTTAATGGTGATCCAGTACTATATCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTTTATATTCTTATTTTACCTGCTTTTGGTG Eimeria_ranae -TATGATGCTTCATTTAATGGTGATCCAGTACTATATCAACATCTATTCTGGTTTTTTGGACATCCAGAAGTTTATATTCTTATTCTACCTGCTTTTGGTG Eimeria_sp._ex._Apodemus_agrarius_21617 -TATGATGCCTCATTTAACGGTGATCCAGTACTTTACCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTATATATTCTTATATTACCTGCTTTTGGCG Eimeria_sp._ex._Apodemus_agrarius_21668 -TATGATGCCTCATTTAACGGTGATCCAGTACTTTACCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTATATATTATTGTCCTACCTGCTTTTGGCG Eimeria_sp._ex._Apodemus_flavicollis_1 -TATGATGCCTCATTTAACGGTGATCCAGTACTTTACCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTATATATTCTTATATTACCTGCTTTTGGCG Eimeria_sp._ex._Apodemus_flavicollis_12 -TACGATGCATCATTTAATGGTGATCCAGTTCTATATCAACATCTATTCTGGTTCTTCGGACATCCAGAAGTCTATATTATTATTTTACCTGCTTTCGGTG Eimeria_sp._ex._Apodemus_flavicollis_4 -TACGATGCCTCATTTAACGGTGATCCAGTACTTTACCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTATATATTATTGTCTTACCTGCTTTTGGCG Eimeria_sp._ex._Apodemus_sylvaticus_0850 -TACGATGCATCATTTAATGGTGATCCAGTTCTATATCAACATCTGTTCTGGTTCTTCGGACATCCAGAAGTCTATATTATTATTTTACCTGCTTTTGGTG Eimeria_sp._ex._Apodemus_sylvaticus_0853 -TATGATGCCTCATTTAACGGTGATCCAGTACTTTACCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTATATATTATTATATTACCTGCTTTTGGCG Eimeria_sp._ex._Phataginus_tricuspis_1 -TACGATGCTTCATTTAACGGTGATCCAGTACTATATCAACATTTATTCTGGTTCTTCGGACACCCAGAAGTCTATATTATTATTTTACCTGCTTTCGGTG Eimeria_sp._ex._Phataginus_tricuspis_2 -TACGATGCTTCATTTAACGGTGATCCAGTACTATATCAACATTTATTCTGGTTCTTCGGACACCCAGAAGTCTATATTATTATTTTACCTGCTTTCGGTG Eimeria_sp._ex._Sorex_araneus_136 GATGCTTCATTTAATGGTGACCCAGTCCTATTCCAACATCTATTCTGGTTCTTCGGACACCCAGAAGTATATATTATTATTCTACCTGCCTTTGGTGTTAT Eimeria_tenella -TACGATGCCGCTTTTAATGGTGATCCAGTATTATATCAACATCTATTCTGGTTCTTCGGACATCCAGAAGTATATATTATTATTTTACCTGCCTTTGGTG Eimeria_vejdovskyi -TACGATGCTTCTTTTAATGGTGATCCAGTACTATATCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTGTATATTCTTATCTTACCTGCTTTTGGTG Isospora_hypoleucae ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Apodemus_flavicollis_B13 -TACGATGCCTCTTTTAATGGTGATCCAGTACTATATCAACATCTATTCTGGTTCTTTGGACATCCAGAAGTATATATTATTATTTTACCTGCTTTTGGTG Isospora_sp._ex._Sylvia_atricapilla_iSAT1 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT2 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT3 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT4 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT5 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Talpa_europaea_106 -TATGATGCTTCATTTAATGGTGATCCAGTTCTATATCAACACCTATTCTGGTTCTTCGGACATCCAGAAGTATATATTATTATTCTGCCTGCTTTTGGTG Isospora_sp._ex._Talpa_europaea_218 -TATGATGCTTCATTTAATGGTGATCCAGTTCTATATCAACACCTATTCTGGTTCTTCGGACATCCAGAAGTGTATATTATTATTYTACCTGCTTTTGGTG Eimeria_acervulina -TTATATCTCAAACATTATCTACTACTGCAGGTAAATTAGTATTCGGAGGCCCTTCAATGATCTTAGCTATGGGATGTATTACTGTACTAGGTTCATTAGT Eimeria_burdai -TTATTTCTCAAACATTATCTACTTCAGCAGGTAAATCAGTCTTCGGAGGTCCTACTATGATCCTAGCTATGGGATGTATTACAGTACTAGGTGCATTAGT Eimeria_cahirinensis_NFS -TTGTTTCTCAAGTATTATCTACTAATGCAGGTAAATTTGTATTCGGAGGTCCTGCTATGATCTTAGCTATGGGATGTATTACCGTACTAGGTTCATTAGT Eimeria_cahirinensis_WR -TTGTTTCTCAAGTATTATCTACTAATGCAGGTAAATTTGTATTTGGAGGTCCTGCTATGATCTTAGCTATGGGATGTATTACCGTACTAGGTTCATTAGT Eimeria_callospermophili -TTATTTCCCAAGTATTATCTACTAATGCAGGTAAATTTGTATTTGGAGGTGTTGCTATGATCTTAGCTATGGGATGTATTACCGTGCTAGGTTCATTAGT Eimeria_caviae -TTATTTCTCAAGCATTATCTACTTCAGCAGGTAAATCAGTATTCGGAGGTCCTACTATGATCCTAGCTATGGGATGTATTACAGTACTAGGTGCGCTAGT Eimeria_cf._mivati -TTATTTCTCAAACTTTATCAACTTCTGCAGGTAAACTAGTTTTCGGAGGTCCATCCATGATATTAGCTATGGGATGTATTACTGTATTAGGATCACTAGT Eimeria_coecicola -TTATTTCTCAAACATTATCTACCTCAGCAGGTAGAGTAGTATTTGGAGGCCCTTCAATGATCTTAGCTATGGGATGTATTACTGTACTAGGTTCTTTAGT Eimeria_exigua -TAATTTCTCAAACATTATCTACATCAGCAGGTAGAATAGTATTCGGAAGTCCTTCCATGATCTTAGCTATGGGATGTATTTCTGTACTAGGTTCATTAGT Eimeria_flavescens -TTATTTCTCAAACATTATCTACATCAGCAGGTAGAATAGTATTCGGAGGTCCTTCTATGATCTTAGCTATGGGATGTATTACTGTACTAGGTTCATTAGT Eimeria_intestinalis -TTATCTCTCAAACATTATCTACCTCAGCAGGTAGAGTAGTCTTCGGAGGCCCTTCTATGATCTTAGCTATGGGATGTATTACTGTACTAGGTTCTTTAGT Eimeria_irresidua -TTATTTCTCAAACATTATCTACCTCAGCAGGTAGAATAGTCTTTGGAGGTCCTTCAATGATCTTAGCTATGGGATGTATTACTGTACTAGGTTCATTAGT Eimeria_magna -TTATTTCTCAAACATTATCTACCTCAGCAGGTAGAGTAGTCTTTGGAGGCCCTTCTATGATCTTAGCTATGGGATGTATTACTGTACTAGGTTCTTTAGT Eimeria_maxima -TCATATCACAAACATTATCTACTAGCGCAGGCAAATTAGTGTTCGGTGGTCCGTCAATGATACTAGCTATGGGATGTATAACTGTGTTAGGTTCATTAGT Eimeria_mivati -TTATTTCTCAAACTTTATCAACTTCTGCAGGTAAACTAGTTTTCGGAGGTCCATCCATGATATTAGCTATGGGATGTATTACTGTATTAGGATCACTAGT Eimeria_myoxi -TTATTTCTCAAACATTATCTACTTCAGCAGGTAAATTAGTCTTCGGAGGTCCTTCAATGATCTTAGCTATGGGATGTATTACTGTACTAGGTTCATTAGT Eimeria_necatrix -TTATTTCTCAAACATTATCTACCACAGCAGGTAAATTAGTATTTGGAGGTCCTTCTATGATCCTTGCTATGGGATGTATTACTGTACTAGGATCATTAGT Eimeria_piriformis -TTATTTCTCAAACATTATCTACATCAGCAGGTAGAATAGTATTCGGAGGTCCTTCAATGATCTTAGCTATGGGATGTATTACTGTACTAGGTTCATTAGT Eimeria_ranae -TTATTTCTCAAACATTATCCACATCAGCTGGTAAATTAGTTTTTGGAGGTCCTTCTATGATCTTAGCTATGGGATGTATTTCTGTACTAGGTTCACTAGT Eimeria_sp._ex._Apodemus_agrarius_21617 -TTATTTCTCAAACATTATCTACTTCAGCAGGTAAATCAGTCTTCGGAGGTCCTACAATGATCCTAGCTATGGGATGTATTACAGTACTAGGTACACTAGT Eimeria_sp._ex._Apodemus_agrarius_21668 -TTATTTCTCAAGCATTATCTACTTCAGCAGGTAAATCAGTGTTCGGAGGTCCTGCAATGATCCTAGCTATGGGATGTATTACAGTACTAGGTGCGCTAGT Eimeria_sp._ex._Apodemus_flavicollis_1 -TTATTTCTCAAACATTATCTACTTCAGCAGGTAAATCAGTCTTCGGAGGTCCTACAATGATCCTAGCTATGGGATGTATTACAGTACTAGGTACACTAGT Eimeria_sp._ex._Apodemus_flavicollis_12 -TTGTTTCTCAAACATTATCTACTTCAGCAGGTAAATTAGTATTCGGAGGTCCTTCAATGATCTTAGCTATGGGATGTATTACCGTACTAGGTTCATTAGT Eimeria_sp._ex._Apodemus_flavicollis_4 -TTATTTCTCAAGCATTATCTACTTCAGCAGGTAAATCAGTATTCGGAGGTCCTGCAATGATCCTAGCTATGGGATGTATTACAGTACTAGGTGCGCTAGT Eimeria_sp._ex._Apodemus_sylvaticus_0850 -TTATTTCTCAAACATTATCTACTTCAGCAGGTAAATTAGTATTCGGAGGTCCTTCAATGATCTTAGCTATGGGATGTATTACCGTACTAGGTTCATTAGT Eimeria_sp._ex._Apodemus_sylvaticus_0853 -TTATCTCTCAAACATTATCTACTTCAGCAGGTAAATCAGTATTCGGAGGTCCTACAATGATCCTAGCTATGGGATGTATTACAGTACTAGGTGCGCTAGT Eimeria_sp._ex._Phataginus_tricuspis_1 -TTATTTCTCAAGTATTATCCACTTCAGCAGGTAAATTAGTATTTGGAGGTCCTTCTATGATCTTAGCTATGGGATGTATTACCGTACTAGGTTCATTAGT Eimeria_sp._ex._Phataginus_tricuspis_2 -TTATTTCTCAAGTATTATCCACTTCAGCAGGTAAATTAGTATTTGGAGGTCCTTCTATGATCTTAGCTATGGGATGTATTACCGTACTAGGTTCATTAGT Eimeria_sp._ex._Sorex_araneus_136 TTCTCAAACATTATCTACTTCAGCAGGTAAATTAGTATTTGGAGGTCCTTCTATGATCTTAGCTATGGGATGTATTACCGTACTAGGTTCACTAGTTTGGG Eimeria_tenella -TTGTTTCTCAAACATTATCTACTTCAGCAGGTAAATTAGTATTTGGAGGTCCTTCTATGATCCTTGCTATGGGATGTATTACTGTACTAGGATCATTAGT Eimeria_vejdovskyi -TTATTTCTCAAACATTATCTACCTCAGCAGGTAGAGTAGTCTTTGGAGGCCCTTCAATGATCTTAGCTATGGGATGTATTACTGTACTAGGTTCTTTAGT Isospora_hypoleucae ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Apodemus_flavicollis_B13 -TTATTTCTCAAACATTATCTACTTCAGCAGGTAAAGTAGTATTTGGAGGTCCTTCAATGATCTTAGCTATGGGATGTATCACTGTACTAGGTTCATTAGT Isospora_sp._ex._Sylvia_atricapilla_iSAT1 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT2 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT3 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT4 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT5 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Talpa_europaea_106 -TTATTTCTCAAGTATTATCAACTKCAACAGGTAAATTAGTATTTGGAGGTCCTTCTATGATCTTAGCTATGGGTTGTATTACCGTACTAGGTTCACTAGT Isospora_sp._ex._Talpa_europaea_218 -TTATTTCTCAAGYATTATCAACTTCAGCAGGTAAATTAGTATTTGGAGGTCCTTCTATGATCTTAGCTATGGGTTGTATTACCGTACTAGGTTCACTAGT Eimeria_acervulina -TTGGGCACATCATATGATGACTGTAGGTTTAGAGACAGATACTAGAGCATACTTCTCTGCTGTAACAATGATGATTGCAATTCCTACAGGTACCAAAATT Eimeria_burdai -TTGGGCACACCATATGATGACAGTAGGTCTCGAAACAGATACTAGAGCTTTCTTCTCAGCTATTACAATGATGATTGCAATCCCTACAGGTACCAAAATT Eimeria_cahirinensis_NFS -TTGGGCACACCATATGATGACAGTAGGTCTAGAAACAGATACTAGAGCATACTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACCAAAATC Eimeria_cahirinensis_WR -TTGGGCACACCATATGATGACAGTAGGTCTAGAAACAGATACTAGAGCATACTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACCAAAATT Eimeria_callospermophili -GTGGGCACACCATATGGTAACAGTAGGTCTAGAGACAGATACTAGAGCATACTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACCAAAATT Eimeria_caviae -TTGGGCACACCATATGATGACAGTAGGTCTCGAAACAGATACAAGAGCATTCTTCTCTGCTATTACAATGATGAT------------------------- Eimeria_cf._mivati -TTGGGCACATCATATGATGACAGTAGGTTTAGAAACAGATACTAGAGCGTATTTCTCTGCTATAACAATGATGATTGCAATTCCTACAGGTACCAAAATT Eimeria_coecicola -GTGGGCACACCATATGATGACAGTAGGTCTAGAAACAGATACTAGAGCATATTTCTCAGCTATTACAATGATGATTGC---------------------- Eimeria_exigua -GTGGGCACACCATATGATGACAGTAGGTATGGAAACAGATACTAGAGCATATTTTTCTGCTATTACAATGATGATTGCTATTCCTACAGGTACCAAAATT Eimeria_flavescens -GTGGGCACACCATATGATGACAGTAGGTCTAGAAACAGATACTAGAGCATATTTTTCTGCTATTACAATGATGATTGCTATTCCTACAGGAACCAAAATT Eimeria_intestinalis -GTGGGCACACCATATGATGACAGTAGGTCTAGAAACAGATACTAGAGCATATTTCTCAGCTATTACAATGATGATTGCAATTCCTACAGGAACCAAAATT Eimeria_irresidua -GTGGGCACATCATATGATGACAGTAGGTCTAGAAACAGATACTAGAGCATATTTTTCTGCGATTACAATGATGATTGCTATTCCTACAGGAACCAAAATT Eimeria_magna -TTGGGCACACCATATGATGACAGTAGGTCTAGAAACAGATACTAGAGCATATTTCTCAGCTATTACAATGATGATTGCAATTCCTACAGGAACCAAAATT Eimeria_maxima -TTGGGCACATCATATGATGACCGTTGGCCTAGAAACAGATACACGAGCTTACTTCTCTGCTATAACGATGATGATTGCGATCCCTACAGGTACCAAAATA Eimeria_mivati -TTGGGCACATCATATGATGACAGTAGGTTTAGAAACAGATACTAGAGCATATTTCTCTGCTATAACAATGATGATTGCAATTCCTACAGGTACCAAAATT Eimeria_myoxi -TTGGGCACACCATATGATGACTGTCGGTCTCGAAACAGATACTAGAGCATACTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACCAAAATT Eimeria_necatrix -ATGGGCACATCATATGATGACAGTTGGTCTAGAGACAGATACTAGAGCATACTTCTCAGCTATTACCATGATGATTGCAATTCCAACAGGTACCAAAATT Eimeria_piriformis -GTGGGCACACCATATGATGACAGTAGGTCTAGAAACAGATACTAGAGCATTTTTCTCTGCTATTACAATGATGATTGCTATTCCTACAGGAACCAAAATT Eimeria_ranae -GTGGGCTCATCATATGGTTACAGTAGGTCTAGAAACAGATACTAGAGCTTACTTTTCTGCTATTACTATGATGATTGCTATTCCTACAGGTACCAAAATC Eimeria_sp._ex._Apodemus_agrarius_21617 -TTGGGCACACCATATGATGACAGTAGGTCTCGAAACAGATACAAGAGCATTCTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACCAAAATT Eimeria_sp._ex._Apodemus_agrarius_21668 -TTGGGCACACCATATGATGACAGTAGGTCTCGAAACAGATACAAGAGCATTCTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACCAAAATT Eimeria_sp._ex._Apodemus_flavicollis_1 -TTGGGCACACCATATGATGACAGTAGGTCTCGAAACAGATACAAGAGCATTCTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACCAAAATT Eimeria_sp._ex._Apodemus_flavicollis_12 -TTGGGCACACCATATGATGACTGTCGGTCTCGAAACAGATACTAGAGCATACTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACCAAAATT Eimeria_sp._ex._Apodemus_flavicollis_4 -TTGGGCACACCATATGATGACAGTAGGTCTCGAAACAGATACAAGAGCATTCTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACCAAAATT Eimeria_sp._ex._Apodemus_sylvaticus_0850 -TTGGGCACACCATATGATGACTGTCGGTCTCGAAACAGAYACTAGAGCATACTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACCAAAATT Eimeria_sp._ex._Apodemus_sylvaticus_0853 -TTGGGCACACCATATGATGACAGTAGGTCTCGAAACAGATACAAGAGCATTCTTCTCTGCTATTACAATGATGATCGCAATTCCTACAGGTACCAAAATT Eimeria_sp._ex._Phataginus_tricuspis_1 -TTGGGCACACCATATGATGACAGTAGGTCTAGAAACAGATACTAGAGCATATTTCTCTGCCATTACAATGATGATTGCAATTCCTACGGGTACCAAAATT Eimeria_sp._ex._Phataginus_tricuspis_2 -TTGGGCACACCATATGATGACAGTAGGTCTAGAAACAGATACTAGAGCATATTTCTCTGCCATTACAATGATGATTGCAATTCCTACGGGTACCAAAATT Eimeria_sp._ex._Sorex_araneus_136 CACACCATATGATGACAGTAGGTATGGAAACAGATACTAGAGCATACTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACCAAAATTTTCAAT Eimeria_tenella -ATGGGCACATCATATGATGACAGTTGGTCTAGAAACAGATACTAGAGCATACTTCTCAGCTATTACCATGATGATTGCAATTCCAACAGGTACCAAAATT Eimeria_vejdovskyi -GTGGGCACACCATATGATGACAGTAGGTCTAGAAACAGATACTAGAGCATATTTCTCAGCTATTACAATGATGATTGCAATTCCTACAGGAACCAAAATT Isospora_hypoleucae -----GCACATCATATGATGACAGTAGGTCTAGAAACAGATACTAGAGCATACTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACCAAAATT Isospora_sp._ex._Apodemus_flavicollis_B13 -TTGGGCACATCATATGATGACAGTAGGTCTAGAGACAGATACTAGAGCATACTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGAACCAAAATT Isospora_sp._ex._Sylvia_atricapilla_iSAT1 -----GCACATCATATGATGACAGTAGGTCTCGAAACAGATACTAGAGCATACTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACTAAAATT Isospora_sp._ex._Sylvia_atricapilla_iSAT2 -----GCACATCATATGATGACAGTAGGTCTAGAAACAGATACTAGAGCATACTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACCAAAATT Isospora_sp._ex._Sylvia_atricapilla_iSAT3 -----GCACATCATATGATGACAGTAGGTCTCGAAACAGATACTAGAGCATACTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACTAAAATT Isospora_sp._ex._Sylvia_atricapilla_iSAT4 -----GCACATCATATGATGACAGTAGGTCTAGAAACAGATACTAGAGCATACTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACTAAAATT Isospora_sp._ex._Sylvia_atricapilla_iSAT5 -----GCACATCATATGATGCCAGTAGGTCTAGAGACAGATACTAGAGCATACTTCTCTGCTATTACAATGATGATTGCAATTCCTACAGGTACCAAAATT Isospora_sp._ex._Talpa_europaea_106 -ATGGGCACACCATATGATGACAGTAGGTCTAGAGACAGATACTAGAGCATATTTCTCTGCTGTTACAATGATGATTGCTATTCCTACAGGTACCAAAATT Isospora_sp._ex._Talpa_europaea_218 -ATGGGCACACCATATGATGACAGTAGGTCTAGAGACAGATACTAGAGCATWTTTCTCTGCTGTTACAATGATGATTGCTATTCCTACAGGTACCAAAATT Eimeria_acervulina -TTCAATTGGTTAAGTACTTATATGGGAAATCCATTTAGTACAATTTCATTAGATATCTGGTATGCTCTAAGTTTTATTTTCCTATTTACTCTTGGTGGTA Eimeria_burdai -TTTAATTGGTTAAGTACTTTTATGGGTAATCCATTTAGTACAATATCATTAGATATTTGGTATGCTTTAAGTTTTATTTTCTTATTTACACTTGGAGGTA Eimeria_cahirinensis_NFS -TTCAATTGGTTAACTACTTTTATGGGTAACCCATTTAGTACAATCTCATTAGATCTTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGAGGTA Eimeria_cahirinensis_WR -TTCAATTGGTTAACTACTTTTATGGGTAATCCATTTAGTACAATCTCATTAGATCTTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTG------ Eimeria_callospermophili -TTCAATTGGTTAACTACTTTTATGGGTAACCCATTTAGTACAATCTCATTGGACCTTTGGTATGCTCTAAGTTTTATTTTCTTGTTTACCCTTGGAGGTA Eimeria_caviae ----------------------------------------------------------------------------------------------------- Eimeria_cf._mivati -TTCAATTGGTTAAGTACTTATATGGGTAATCCATACAGCACAATATCATTAGATATTTGGTATGCTCTAAGTTTTATCTTCTTATTTACTTTAGGTGGTA Eimeria_coecicola ----------------------------------------------------------------------------------------------------- Eimeria_exigua -TTCAACTGGTTAGGTACTTTTATGGGTAATCCATTCAGTACAATATCATTAGATGTTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGAGGTA Eimeria_flavescens -TTCAACTGGTTAGGTACTTTTATGGGTAATCCATTCAACACAATATCATTAGATATTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGAGGTA Eimeria_intestinalis -TTCAACTGGTTAGGTACTTTTATGGGTAATCCATTTAGTACTATTTCATTAGATATTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGAGGTA Eimeria_irresidua -TTCAACTGGTTAGGTACTTTTATGGGTAATCCATTTAGTACAATATCATTAGATATTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGAGGTA Eimeria_magna -TTCAACTGGTTAGGTACTTTTATGGGTAATCCATTTAGTACTATTTCATTAGATATTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGAGGTA Eimeria_maxima -TTCAATTGGTTAGGTACTTATATGGGTAATCCATTCAGTACAATATCATTGGATATCTGGTATGCTTTAAGTTTTATATTCTTATTTACTCTTGGGGGTA Eimeria_mivati -TTCAATTGGTTAAGTACTTATATGGGTAATCCATACAGCACAATATCATTAGATATTTGGTATGCTCTAAGTTTTATCTTCTTATTTACTTTAGGTGGTA Eimeria_myoxi -TTCAATTGGTTAAGTACTTTCATGGGTAATCCATTCAG-------------------------------------------------------------- Eimeria_necatrix -TTTAACTGGTTAAGTACTTATATGGGAAACCCATTTAGTACAATATCACTAGATATTTGGTATGCTTTAAGCTTTATTTTCCTATTTACTCTAGGAGGTA Eimeria_piriformis -TTCAACTGGTTAGGTACTTTTATGGGTAATCCATTCAATACAATATCATTAGATACTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGAGGTA Eimeria_ranae -TTTAACTGGTTAAGTACCTTTATGGGAAATTCATTTAGTACTATATCATTAGATATCTGGTATGCTTTAAGTTTTATTTTCCTATTTACACTTGGTGGAA Eimeria_sp._ex._Apodemus_agrarius_21617 -TTTAATTGGTTAAGTACTTTTATGGGTAATCCATTCAGTACAATATCATTAGATATTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGAGGTA Eimeria_sp._ex._Apodemus_agrarius_21668 -TTTAATTGGTTAAGTACTTTTATGGGTAACCCATTCAGTACAATATCATTAGATATTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGAGGTA Eimeria_sp._ex._Apodemus_flavicollis_1 -TTTAATTGGTTAAGTACTTTTATGGGTAATCCATTCAGTACAATATCATTAGATATTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGAGGTA Eimeria_sp._ex._Apodemus_flavicollis_12 -TTCAATTGGTTAAGTACTTTCATGGGTAATCCATTCAGTACAATTTCATTAGATATTTGGTATGCTCTAAGTTTTATCTTCTTATTCACTCTTGGAGGTA Eimeria_sp._ex._Apodemus_flavicollis_4 -TTTAATTGGTTAAGTACTTTTATGGGTAATCCATTCAGTACAATATCATTAGATATTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGAGGTA Eimeria_sp._ex._Apodemus_sylvaticus_0850 -TTCAATTGGTTAAGTACTTTTATGGGTAATCCATTTAGTACAATTTCATTAGATATTTGGTATGCTCTAAGTTTTATCTTCTTATTCACTCTTGGAGGTA Eimeria_sp._ex._Apodemus_sylvaticus_0853 -TTTAATTGGTTAAGTACTTTTATGGGTAATCCATTCAGTACAATATCATTAGATATTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGAGGTA Eimeria_sp._ex._Phataginus_tricuspis_1 -TTCAATTGGTTAAGTACTTTTATGGGTAATCCATTCAGTACAATCTCATTAGATACTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGG----- Eimeria_sp._ex._Phataginus_tricuspis_2 -TTCAATTGGTTAAGTACTTTTATGGGTAATCCATTCAGTACAATCTCATTAGATACTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGAGGTA Eimeria_sp._ex._Sorex_araneus_136 TGGTTAGGTACTTTCATGGGTAATCCATTCAGTACAATTTCATTAGATATCTGGTATGCTCTAAGTTTTATCTTCTTATTCACTCTTGGAGGTACTACTGG Eimeria_tenella -TTTAACTGGTTAAGTACTTATATGGGAAATCCATTTAGTACAATATCACTAGATATTTGGTATGCTTTAAGCTTTATTTTCCTATTTACTCTAGGAGGTA Eimeria_vejdovskyi -TTCAACTGGTTAGGTACT---------------------------------------------------------------------------------- Isospora_hypoleucae -TTTAATTGGTTAGGTACTTTTATGGGTAATCCATTCAGTACAATTTCATTAGATACTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGTGGTA Isospora_sp._ex._Apodemus_flavicollis_B13 -TTCAATTGGTTAGGTACTTTTATGGGAAATCCATTTAGTACAATTTCATTAGATATTTGGTATGCTCTAAGTTTTATCTTTCTATTTACCCTTGGAGGTA Isospora_sp._ex._Sylvia_atricapilla_iSAT1 -TTCAACTGGTTAAGTACTTTTATGGGAAATCCATTCAGTACAATTTCATTAGATACCTGGTATGCTCTAAGTTTTATCTTCTTATTTACCCTTGGAGGTA Isospora_sp._ex._Sylvia_atricapilla_iSAT2 -TTCAATTGGTTAAGTACTTTTATGGGTAATCCATTCAGTACAATCTCATTAGATACTTGGTATGCTCTAAGTTTTATCTTCTTATTTACCCTTGGAGGTA Isospora_sp._ex._Sylvia_atricapilla_iSAT3 -TTCAACTGGTTAAGTACTTTTATGGGAAATCCATTTAGTACAATTTCATTAGATACTTGGTATGCTCTAAGTTTTATCTTCTTATTTACCCTAGGAGGTA Isospora_sp._ex._Sylvia_atricapilla_iSAT4 -TTCAACTGGTTAAGTACTTTTATGGGAAATCCATTCAGTACAATTTCATTAGATACTTGGTATGCTCTAAGTTTTATCTTCTTATTTACCCTTGGAGGTA Isospora_sp._ex._Sylvia_atricapilla_iSAT5 -TTCAATTGGTTAAGTACTTTTATGGGTAATCCATTTAGTACAATCTCATTAGATATTTGGTATGCTCTAAGTTTTATTTTCTTATTTACCCTTGGAGGTA Isospora_sp._ex._Talpa_europaea_106 -TTCAATTGGTTAAGTACTTACATGGGTAATTCATACAGTACCATTTCATTAGATATTTGGTATGCTTTAAGTTTTATTTT-------------------- Isospora_sp._ex._Talpa_europaea_218 -TTCAATTGGTTAAGTACTTWCATGGGTAAYCCATTCAGTACAATTTCATTAGATATTTGGTATGCTTTAAGTTTTATTTTCTTATTTACTCTTGGAGG-- Eimeria_acervulina -CCACTGGAGTAGTTCTAGGTAATACTGCTTTAAATGTTGCTCTACACGACACTTACTATGTAATTGCCCACTTCCACTTCGTATTATCTCTTGGTGCGGT Eimeria_burdai -CTACAGGTGTAGTATTAGGTAACACTGCTGTTGATGTTGCTCTACATGATACTTATTATGTAATTGCTCACTTCCATTTCGTACTATCTCTTG------- Eimeria_cahirinensis_NFS -CTACTGGTGTAGTACTAGGTAATGCAGCTGTTGATGTTGCTCTTCATGATACTTACTATGTAATTGCTCACTTCCATTTTGTACTATCTCT--------- Eimeria_cahirinensis_WR ----------------------------------------------------------------------------------------------------- Eimeria_callospermophili -CTACTGGTGTAGTATTAGGTAATGCAGCTGTTGATGTTGCTCTTCATGATACTTACTATGTAATTGCTCACTTCCATTTTGTACTATCTCTTGGTGCG-- Eimeria_caviae ----------------------------------------------------------------------------------------------------- Eimeria_cf._mivati -CCACTGGAGTAGTTCTAGGTAACACTGCTGTAGATGTTGCTTTACATGATACTTATTATGTAATTGCTCACTTCCATTTTGTTCTATCTCTTGGTGCGGT Eimeria_coecicola ----------------------------------------------------------------------------------------------------- Eimeria_exigua -CAACTGGTGTAGTATTAGGTAACTCTGCTGTTGATGTCGCTCTACATGATACTTACTATGTAATTGCTCACTTCCACTTTGTACTATCTCTT-------- Eimeria_flavescens -CTACTGGTGTAGTCTTA----------------------------------------------------------------------------------- Eimeria_intestinalis -CTACTGGTGTAGTCTTGGGTAACTCTGCTGTGGATGTTGCTCTACATGATACTTACTATGTAATTGCTCACTTCCACTTTGTACTTT------------- Eimeria_irresidua -CTACTGGTGTAGTCTTAGGTAACACTGCTGTTGATGTTGCTCTACATGATACTTACTATGTAATTGCTCACTTCCACTTTGTACTATCTCT--------- Eimeria_magna -CTACTGGTGTAGTCTTGGGTAACACTGCTGTTGATGTTGCTCTACATGATACTTACTATGTAATTGCTCACTTCCACTTTGTACTATCTCTTG------- Eimeria_maxima -CCACAGGAGTAGTGCTAGGTAATACTGCGGTAGATGTTGCTTTACATGATACTTATTATGTAATAGCTCATTTCCATTTTGTTTTATCTCTTGGTGCGGT Eimeria_mivati -CCACTGGAGTAGTTCTAGGTAATACTGCTTTAGATGTTGCTTTACATGATACTTATTATGTAATTGCTCACTTCCATTTTGTTCTATCTCTTGGTGCGGT Eimeria_myoxi ----------------------------------------------------------------------------------------------------- Eimeria_necatrix -CCACTGGAGTAGTATTAGGTAATACTGCTTTAGATGTTGCTCTACATGATACATACTATGTAATTGCCCACTTCCATTTCGTATTATCTCTTGGTGCGGT Eimeria_piriformis -CTACTGGTGTAGTATTAGGTAACTCTGCTGTTGATGTTGCTCTACATGATACTTACTATGTAATTGCTCACTTCCACTTTGTATTATCTCTTGG------ Eimeria_ranae -CTACTGGTGTAGTTCTAGGTAATGCTGCTGTGGATATTGCCTTACATGATACTTA--------------------------------------------- Eimeria_sp._ex._Apodemus_agrarius_21617 -CAACTGGTGTAGTATTAGGTAACACTGCTGTTGATGTTGCTCTACATGATACTTATTATGTTATTGCTCACTTCCATTTCGTACTATCTCT--------- Eimeria_sp._ex._Apodemus_agrarius_21668 -CAACTGGTGTAGTATTAGGTAACACTGCTGTTGATGTTGCTCTACATGATACTTACTATGTAATTGCTCACTTCCATTTCGTACTATCTCTTGGTGCG-- Eimeria_sp._ex._Apodemus_flavicollis_1 -CAACTGGTGTAGTATTAGGTAACACTGCTGTTGATGTTGCTCTACATGATACTTATTATGTTATTGCTCACTTCCATTTCGTACTATCTCTTG------- Eimeria_sp._ex._Apodemus_flavicollis_12 -CTACTGGTGTAGTCCTAGGTAATACTGCTTTAGATGTTGCTCTACATGATACTTATTATGTTATTGCTCACTTCCATTTTGTACTATCTCTT-------- Eimeria_sp._ex._Apodemus_flavicollis_4 -CAACTGGTGTAGTATTAGGTAACACTGCTGTTGATGTTGCTCTACATGATACTTACTATGTAATTGCTCACTTCCATTTCGTACTATCTCTTG------- Eimeria_sp._ex._Apodemus_sylvaticus_0850 -CTACTGGTGTAGTCCTAGGTAATACTGCTTTAGATGTTGCTCTACATGATACTTACTATGTTATTGCTC------------------------------- Eimeria_sp._ex._Apodemus_sylvaticus_0853 -CTACTGGTGTAGTATTAGGTAACACTGCTGTTGATGTTGCTCTACATGATACTTATTATGTAATTGCTCACTTCCATTTCGTACTATCTCTTG------- Eimeria_sp._ex._Phataginus_tricuspis_1 ----------------------------------------------------------------------------------------------------- Eimeria_sp._ex._Phataginus_tricuspis_2 -CTACTGGTGTAGTGCTAGGTAATACTGCTGTTGATGTTGCTCTTCATGATACTTACTATGTAATTGCTCACTTCCACTTTGTATTATCTCTT-------- Eimeria_sp._ex._Sorex_araneus_136 TGTAGTCCTAGGTAACAGTGCTATAGATGTTGCT------------------------------------------------------------------- Eimeria_tenella -CCACTGGAGTAGTACTAGGCAATACTGCTTTAGATGTTGCTCTACATGATACATACTATGTAATTGCCCACTTCCATTTCGTATTATCTCTTGGTGCGGT Eimeria_vejdovskyi ----------------------------------------------------------------------------------------------------- Isospora_hypoleucae -CTACTGGTGTAGTATTAGGTAACACTGCTGTTGATGTTGCACTACATGATACATACTATA---------------------------------------- Isospora_sp._ex._Apodemus_flavicollis_B13 -CTACTGGTGTAGTATTAGGTAACACTGCTGTTGATGTTGCTCTACACGATACTTACTATGTAATTGCTCACTTCCATTTCGTACTATCTCTT-------- Isospora_sp._ex._Sylvia_atricapilla_iSAT1 -CTACTGGTGTAGTATTAGGTAACACTGCTGTTGATGTTGCACTACATGATACATACTATA---------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT2 -CTACTGGTGTAGTACTAGGTAACTCTGCTGTTGATGTTGCACTACATGATACATACTATA---------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT3 -CTACTGGTGTAGTATTAGGTAACACTGCTGTTGATGTTGCACTACATGATACATACTATA---------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT4 -CTACTGGTGTAGTATTAGGTAACACTGCTGTTGATGTTGCACTACATGATACATACTATA---------------------------------------- Isospora_sp._ex._Sylvia_atricapilla_iSAT5 -CTACTGGTGTAGTATTAGGTAACTCTGCTGTTGATGTTGCACTACATGATACATACTATA---------------------------------------- Isospora_sp._ex._Talpa_europaea_106 ----------------------------------------------------------------------------------------------------- Isospora_sp._ex._Talpa_europaea_218 ----------------------------------------------------------------------------------------------------- ; ranae , - - - - - - - - magna , - - - - - - - - irresidu , - - - - - - - - piriform , - - - - - - - - intestin , - - - - - - - - vejdovsk , - - - - - - - - exigua , - - - - - - - - flavesce , - - - - - - - - coecicol , - - - - - - - - AFB13Iso , - - - - - - - - 0853AS , - - - - - - - - 0850AS , - - - - - - - - 106krtek , - - - - - - - - 136rejsek - - - - - - - - luskoun1 , - - - - - - - - luskoun2 , - - - - - - - - WRcahir , - - - - - - - - callospe , - - - - - - - - 1AF , - - - - - - - - 4AF , - - - - - - - - 21617AGR , - - - - - - - - K12rypos , - - - - - - - - caviae , - - - - - - - - myoxi , - - - - - - - -; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 808; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 808; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 808; END; BEGIN TREES; Title COI_BI; LINK Taxa = Taxa; TRANSLATE 1 Eimeria_acervulina, 2 Eimeria_burdai, 3 Eimeria_cahirinensis_NFS, 4 Eimeria_cahirinensis_WR, 5 Eimeria_callospermophili, 6 Eimeria_caviae, 7 Eimeria_cf._mivati, 8 Eimeria_coecicola, 9 Eimeria_exigua, 10 Eimeria_flavescens, 11 Eimeria_intestinalis, 12 Eimeria_irresidua, 13 Eimeria_magna, 14 Eimeria_maxima, 15 Eimeria_mivati, 16 Eimeria_myoxi, 17 Eimeria_necatrix, 18 Eimeria_piriformis, 19 Eimeria_ranae, 20 Eimeria_sp._ex._Apodemus_agrarius_21617, 21 Eimeria_sp._ex._Apodemus_agrarius_21668, 22 Eimeria_sp._ex._Apodemus_flavicollis_1, 23 Eimeria_sp._ex._Apodemus_flavicollis_12, 24 Eimeria_sp._ex._Apodemus_flavicollis_4, 25 Eimeria_sp._ex._Apodemus_sylvaticus_0850, 26 Eimeria_sp._ex._Apodemus_sylvaticus_0853, 27 Eimeria_sp._ex._Phataginus_tricuspis_1, 28 Eimeria_sp._ex._Phataginus_tricuspis_2, 29 Eimeria_sp._ex._Sorex_araneus_136, 30 Eimeria_tenella, 31 Eimeria_vejdovskyi, 32 Isospora_hypoleucae, 33 Isospora_sp._ex._Apodemus_flavicollis_B13, 34 Isospora_sp._ex._Sylvia_atricapilla_iSAT1, 35 Isospora_sp._ex._Sylvia_atricapilla_iSAT2, 36 Isospora_sp._ex._Sylvia_atricapilla_iSAT3, 37 Isospora_sp._ex._Sylvia_atricapilla_iSAT4, 38 Isospora_sp._ex._Sylvia_atricapilla_iSAT5, 39 Isospora_sp._ex._Talpa_europaea_106, 40 Isospora_sp._ex._Talpa_europaea_218; TREE con_50_majrule = (32:0.025953,(37:0.005451,(34:0.009684,36:0.016078)0.95:0.011218)1.00:0.024186,(29:0.048248,19:0.598645,(((30:0.008214,17:0.015669)1.00:0.092165,(1:0.085189,(15:0.017427,(14:0.160916,7:0.005111)0.99:0.026177)1.00:0.075927)0.66:0.015439)1.00:0.027397,(25:0.005763,(23:0.005062,16:0.027597)0.67:0.006395)1.00:0.033764)0.97:0.016472,(2:0.033164,(26:0.010362,6:0.010236,(21:0.007916,24:0.004635)1.00:0.006668,(22:0.001607,20:0.003114)1.00:0.01335)0.57:0.010196)1.00:0.055743,(40:0.005328,39:0.017282)1.00:0.067357,((5:0.05126,(3:0.011775,4:0.002818)0.87:0.008006)1.00:0.047089,(27:0.001784,28:0.001795)1.00:0.036449)0.99:0.029432,(33:0.040863,((8:0.004815,(31:0.008934,(13:0.009042,11:0.031781)0.76:0.006105)0.69:0.005587)1.00:0.033293,(12:0.011009,(9:0.027408,(18:0.011139,10:0.013485)0.99:0.008262)1.00:0.012742)1.00:0.025968)1.00:0.02362)0.99:0.0214)0.91:0.034254,(35:0.011115,38:0.034676)0.73:0.015117); END; BEGIN TREES; Title COI_phyml; LINK Taxa = Taxa; TRANSLATE 1 Eimeria_acervulina, 2 Eimeria_burdai, 3 Eimeria_cahirinensis_NFS, 4 Eimeria_cahirinensis_WR, 5 Eimeria_callospermophili, 6 Eimeria_caviae, 7 Eimeria_cf._mivati, 8 Eimeria_coecicola, 9 Eimeria_exigua, 10 Eimeria_flavescens, 11 Eimeria_intestinalis, 12 Eimeria_irresidua, 13 Eimeria_magna, 14 Eimeria_maxima, 15 Eimeria_mivati, 16 Eimeria_myoxi, 17 Eimeria_necatrix, 18 Eimeria_piriformis, 19 Eimeria_ranae, 20 Eimeria_sp._ex._Apodemus_agrarius_21617, 21 Eimeria_sp._ex._Apodemus_agrarius_21668, 22 Eimeria_sp._ex._Apodemus_flavicollis_1, 23 Eimeria_sp._ex._Apodemus_flavicollis_12, 24 Eimeria_sp._ex._Apodemus_flavicollis_4, 25 Eimeria_sp._ex._Apodemus_sylvaticus_0850, 26 Eimeria_sp._ex._Apodemus_sylvaticus_0853, 27 Eimeria_sp._ex._Phataginus_tricuspis_1, 28 Eimeria_sp._ex._Phataginus_tricuspis_2, 29 Eimeria_sp._ex._Sorex_araneus_136, 30 Eimeria_tenella, 31 Eimeria_vejdovskyi, 32 Isospora_hypoleucae, 33 Isospora_sp._ex._Apodemus_flavicollis_B13, 34 Isospora_sp._ex._Sylvia_atricapilla_iSAT1, 35 Isospora_sp._ex._Sylvia_atricapilla_iSAT2, 36 Isospora_sp._ex._Sylvia_atricapilla_iSAT3, 37 Isospora_sp._ex._Sylvia_atricapilla_iSAT4, 38 Isospora_sp._ex._Sylvia_atricapilla_iSAT5, 39 Isospora_sp._ex._Talpa_europaea_106, 40 Isospora_sp._ex._Talpa_europaea_218; TREE PHYLIP_1 = (32:0.033384,((37:0.0,(36:0.016102,34:0.007287)0.7580000000:0.008373)0.9360000000:0.025463,((35:0.006903,38:0.043236)0.8390000000:0.01692,(((2:0.043416,((20:0.002428,22:0.0)0.9680000000:0.017601,(26:0.014222,(6:0.016112,(24:0.004772,21:0.009712)0.8830000000:0.00715)0.8340000000:0.006772)0.0870000000:0.004233)0.3470000000:0.013063)1.0000000000:0.082127,(33:0.056319,((11:0.042975,(8:0.005888,(31:0.01087,13:0.01583)0.0000000000:0.0)0.0000000000:0.01023)0.9930000000:0.041694,(12:0.011137,(9:0.038693,(10:0.017185,18:0.014774)0.8330000000:0.009662)0.9050000000:0.018962)0.9580000000:0.035245)0.9520000000:0.038918)0.9310000000:0.028191)0.0000000000:0.0,(((28:0.0,27:0.0)0.9860000000:0.055048,(5:0.074696,(4:0.0,3:0.017591)0.8240000000:0.008963)0.9970000000:0.064723)0.9830000000:0.053709,((29:0.064074,(39:0.021711,40:0.0056)0.9990000000:0.092762)0.8330000000:0.023132,(19:0.313124,((25:0.004661,(16:0.039118,23:0.003858)0.7670000000:0.008379)0.9980000000:0.048898,((1:0.125455,(15:0.003132,(7:0.003132,14:0.239393)0.7940000000:0.039115)1.0000000000:0.108334)0.4970000000:0.018384,(30:0.008321,17:0.023378)0.9990000000:0.137052)0.9140000000:0.033845):0.0)0.5920000000:0.012763)0.4740000000:0.021723)0.6870000000:0.007898)0.9720000000:0.043524)0.0000000000:0.0):0.0); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1341163544785; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5732533049081480148; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4594929190387347276; mqVersion 275; checksumv 0 3 69604180 null getNumChars 808 numChars 808 getNumTaxa 40 numTaxa 40 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 727853.0 sumSquares -4.150517416584648E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4594929190387347276 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;