#NEXUS
[written Wed Apr 09 23:05:55 ICT 2014 by Mesquite  version 2.75 (build 566) at simba.p-2612hnu-f1f/192.168.1.45]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=8;
	TAXLABELS
		Mus_musculus Homo_sapiens Pan_troglodytes Macaca_mulatta Rattus_norvegicus Bos_taurus Canis_lupus_familiaris Equus_caballus 
	;

END;


BEGIN CHARACTERS;
	TITLE  mouse_data_Matrix;
	DIMENSIONS  NCHAR=279;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Mus_musculus            ATGAAGGTCTCCACCACTGCCCTTGCTGTTCTTCTCTGTACCATGACACTCTGCAACCAAGTCTTCTCAGCGCCATATGGAGCTGACACCCCGACTGCCTGCTGCTTCTCCTAC---AGCCGGAAGATTCCACGCCAATTCATCGTTGACTATTTTGAAACCAGCAGCCTTTGCTCCCAGCCAGGTGTCATTTTCCTGACTAAGAGAAACCGGCAGATCTGCGCTGACTCCAAAGAGACCTGGGTCCAAGAATACATCACTGACCTGGAACTGAATGCC
	Homo_sapiens            ATGCAGGTCTCCACTGCTGCCCTTGCTGTCCTCCTCTGCACCATGGCTCTCTGCAACCAG---TTCTCTGCATCACTTGCTGCTGACACGCCGACCGCCTGCTGCTTCAGCTACACCTCCCGGCAGATTCCACAGAATTTCATAGCTGACTACTTTGAGACGAGCAGCCAGTGCTCCAAGCCCGGTGTCATCTTCCTAACCAAGCGAAGCCGGCAGGTCTGTGCTGACCCCAGTGAGGAGTGGGTCCAGAAATATGTCAGCGACCTGGAGCTGAGTGCC
	Pan_troglodytes         ATGCAGGTCTCCACTGCTGCCCTTGCTGTCCTCCTCTGCACCATGGCTCTCTGCAACCAG---TTCTCTGCATCACTTGCTGCTGACACGCCGACCGCCTGCTGCTTCAGCTACATCTCCCGGCAGATTCCACAGAATTTCATAGCGGACTACTTTGAGACGAGCAGCCAGTGCTCCAAGCCCAGTGTCATCTTCCTAACCAAGAGAGGCCGGCAGGTCTGTGCTGACCCCAGTGAGGAGTGGGTCCAGAAATATGTCAGCGACCTGGAGCTGAGTGCC
	Macaca_mulatta          ATGCAGGTCTCCACTGCTGCCCTTGCCGTCCTCCTCTGCACCGTGGCTCTCTGCAAGCAGGTCTTCTCTGCACCACTTGGTGCTGACACGCCGACCTCCTGCTGCTTCAGCTACATCTCCCGGCACATTCCACAGAATTTCGTAGCTGACTACTTTGAGACCAGCAGCCAGTGCTCCAAGCCCGGTGTCATCTTCCTAACCAAGAGAGGCCGGCAGGTCTGTGCTGACCCCAGTGAGGACTGGGTCCAGAAATACGTCAGCGACCTGGAGCTGAGTGCC
	Rattus_norvegicus       ATGAAGGTCTCCACCGCTGCCCTTGCTGTTCTTCTCTGCACCATGGCGCTCTGGAACGAAGTCTTCTCAGCGCCATATGGAGCTGACACCCCGACTGCCTGCTGCTTCTCCTAT---GGACGGCAAATTCCACGAAAATTCATTGCTGACTATTTTGAGACCAGCAGCCTTTGCTCCCAGCCGGGTGTCATTTTCCTGACCAAGAGAAACCGGCAGATCTGCGCTGACCCCAAAGAGACCTGGGTCCAAGAATACATCACTGAGCTGGAACTAAATGCC
	Bos_taurus              ATGAAGGCGCCCGTGGCTGCTCTCGCCGTTCTCCTCTGCGCCATGGCCCTCTGCAGCCAGGTCTTCTCGGCACCATTTGGCGCTGACACCCCAACGGCCTGCTGCTTCTCCTATGTCGCCCGGCAGCTTTCTCGCAAAATCGTAGCTGACTATTTTGAGACCAGCAGCCAGTGCTCCAAGCCTGGCGTCATCTTCCAGACCAAAAAAGGCCGGCAGGTCTGTGCCAACCCCACTGAGGACTGGGTCCAGGAATACATCACCGACCTGGAGCTGAATCCC
	Canis_lupus_familiaris  ATGAAGGTCCCCGGGGCTGCCCTCGCCGTCCTCCTCTGCACCATGTCCCTCTGCAGCCAGGTCTTCTCTGCACCATTTGGTGCTGACACCCCAATAGCCTGCTGCTTCTCCTACGTCTCCAAGCAGATTCCACGCAAGTTCATAGTCGACTGCTTTGAGACCAGCAGCCAATGCTCCAAGCCCGGTATTATCTTCGAAACCAGAAAAGGCCGCCAGGCCTGTGCCAACCCCAGTGAGGCCTGGGTCCAGGAATATGTGGCCGATCTGAAGCTGAAAGCC
	Equus_caballus          ATGAAGGTCCCCGTGGCTGCCCTTGCCGTCCTCCTCTGCACCATGGCCCTCTGCAGCCAGGTCTTCTCTGTACCATTCGGTGCCGACACCCCAACTGCCTGCTGCTTCTCCTACGTCTCCCGGCAGATTCCGCGCAAATTCATAAACGACTATTATGAGACCAGCAGCCAGTGCTCCAAGCCAGCCATCATCTTCCAAACCAAAAGAAGCCGGCAGGTCTGTGCTGACCCCAGTGAGGCCTGGGTCCAGGAGTACGTGACCGACCTGGAGCTGAGCGCC

;



END;

BEGIN TREES;
	Title mouse_phylogeny;
	LINK Taxa = Taxa;
	TRANSLATE
		1 Mus_musculus,
		2 Homo_sapiens,
		3 Pan_troglodytes,
		4 Macaca_mulatta,
		5 Rattus_norvegicus,
		6 Bos_taurus,
		7 Canis_lupus_familiaris,
		8 Equus_caballus;
	TREE tree_1 = (1:0.028523902939401182,5:0.03601197114550155,((4:0.026021764536895364,(2:0.003843135825409425,3:0.004322830163709581)inode4:0.009156412868804212)inode3:0.039045380642299655,(7:0.0629334444462801,(6:0.07356214799052008,8:0.04838456774727731)inode6:0.005081837257081116)inode5:0.017522187733373253)inode2:0.09364969675060515)root[% ] [% ] [%  setBetweenBits = selected ];

END;


BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  279;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  279;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Jukes-Cantor':  1 -  279;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1397059555957;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 3090599882431770352;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 1093021120426379361;
			mqVersion 275;
			checksumv 0 3 534228657 null  getNumChars 279 numChars 279 getNumTaxa 8 numTaxa 8   short true   bits 15   states 15   sumSquaresStatesOnly 43602.0 sumSquares 43602.0 longCompressibleToShort false usingShortMatrix true   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState true false 100;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 853 548;
			setLocation 8 22;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			setActive;
			desuppress;
		endTell;
		endTell;
end;