#NEXUS
[written Wed Apr 09 23:02:07 ICT 2014 by Mesquite  version 2.75 (build 566) at simba.p-2612hnu-f1f/192.168.1.45]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=12;
	TAXLABELS
		Drosophila_melanogaster Drosophila_ananassae Drosophila_erecta Drosophila_grimshawi Drosophila_mojavensis Drosophila_persimilis Drosophila_pseudoobscura Drosophila_sechellia Drosophila_simulans Drosophila_virilis Drosophila_willistoni Drosophila_yakuba 
	;

END;


BEGIN CHARACTERS;
	TITLE  fly_data_Matrix;
	DIMENSIONS  NCHAR=576;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Drosophila_melanogaster   ATGCTGGTCATGGACGCATTGTTTAACAGCCTATTGGTGGTCAGTTCCGGCTATGCGATCTACACTCTCCATCCAATGGAAACACCCTATGGCTATGCAACAGCGGCCTTGAGCCTGGTCCATGGAATTTTGGGAATGGTGCGAGCGGCGAGCAACGACGATGACGAATGCAATCGGGTGCGATTGATTACGTCGGGCATCATGGAGATAGTACCGCTGCCCCTGACCAATATGGAGCTGTATCTGAAGTCCACCAATCCGGGCTTGGCTTTGGCGCACACATGTTTTGTGGTGCCATTAGTCTACGATATGTTGGCCAAAGTGGTTGACACCGAGGATACCGTAACGGAGACCCTTAAGGAACTAACACTGTTGGGCAACGTTGTGTCCATGCTCTTTTTGGGCGTCAACGAGTCGAATAATATGTACGGCATCTTGGCTGCCATCGCTTTTGGTGCTCGATACGGTTCCGCTTTTCTCGACTACTACTGGAAGGGATTAGGTGCCGAATTCACCCTACTGGCCCACTCCATGTTTGTCCTACTGATGACGATGACCCTTTCGGCGAAA------
	Drosophila_ananassae      ATGCTTCTGATGGACGCCCTCTTTAACAGTCTGCTGGTGGTGAGCTCCGGCTATGCCATGTACACCCTGCGCCCCCTGGAGACGCCCTACGGATATGCCGCCGCCGCCCTCAGTCTGGTCCATGGGCTGTTGGGCGTGGCCCGAGCCGCCAGCAACGACGATGACGAGTGCAATCGATTGCGTTTAATCACATCCGGTATCATGGAGATCGTTCCGCTGCCACTGACCAACATCGAACTGTATCTGAAGTCGACCAACCCGGGCCTGGCGCTGGCCCATGGCTGTTTTGTGGTGCCGCTGGCCTACGATCTGATGGCCAAAATGGGTGACAACGAGGACACCTCCACCGAGACCCTCAAGGAGCTGACCCTGCTGGGGAATGTCGTCTCCATGCTCTTCCTGGGCGTGAACCAGCTGAGCAACATGTACGGCGGCATGGCGGCCATCGCCTTCGCGGCCCGCTACGGCTCCGTCATCCTTGACTACTACTGGGAGGGCCTCGGCTCCGACTTCAATCTCCTGGCCCACTCCATGTTCATTGTCCTGATGACGATGACCCTCTCGGCCAAA------
	Drosophila_erecta         ATGCTGCTAATGGACGCATTGTTCAACAGCCTATTGGTGGTCAGTTCCGGCTATGCGATGTACAGCCTCCACCCCCTGGAAACGCCCTATGGTTATGCAACAGCGACCTTGAGCCTCGTCCACGGAATCTTGGGTATGGTCCGGGCGGCGAGCAACGACGACGATGAATGCAATCGGATGCGGCTGATACCGTCGGGCATTATGGAGATAGTGCCGCTGCCATTGACCAATATCGAGCTCTATCTGAAGTCCAGCAATCCGAGCCTGGCTTTGGCCCACACCTGCTTTGTGGTGCCATTGGTCTACGACATGATGGCCAAATTGGCTGGCACCGAGGACACATCCATCGAAACCCTCAAGGAACTCACACTCCTGGGCAACGTGGTCTCCCTGCTCTTCCTGGGCGTCAATCAGTCCAACAATCTGTATGGCGGCATGGCTGCCATTGCTTTTGCGGCTCACTACGGTTCTGTTATT---GACTATTACTGGAAGGGATTGGGTGGCGAGTTCAACCTGCTGGCCCACTCCATGTTTGTCGTCCTGATGACCATGACACTGGCGGCTAAA------
	Drosophila_grimshawi      ATGCTGTTCATGGACGCACTGTTCAACAGCTTGCTGGTGGTCAGCTCCGGCTATGCGATGTACACGCTGCATCCGTGGCAAACACCCTACGGCTATGCGGCGGCCGCATTGAGTCTGGTGCATGGACTGCTGGGTGTGGTGCGGGCGGCAAACAACGATGATGATGAATGCAATCGCGCACGGCAGATAACGTCCGGTGTTATGGAGCTGGTGCCGTTGCCATTGGCCAACATCGAGCTGTATCTGAAATCGTCCAGTCCGCATCTGGCAATGGCGCATGGCTGCTTTGTGATACCGTTGGCCTTCGATCTGGTTGCCAAGTGGCGCGACAGCGAGGACAATTCAACGGCGACGCTCAAGGATCTGACGCTGCTCGGCAATGTGGTATCGCTGCTCTTTCTGGGCGTCAATCAGTCGAGCAATGTTTGCGGTAGCATGGCGGCAATTGCAATGGCTGCACGCTACGGCTCCGTCATGCTCGAATATTACTGGGAGGGTCTAGGCATTCACTTCAATCTGCTGGCCAATTCGGCGTTCATCGTACTAATGGCCATGACCCTGACGACAAAGTCC---
	Drosophila_mojavensis     ATGCTGTTCATGGACGCGCTGTTCAACAGCTTGCTGGTGGTCAGCTCCGGCTATGCAATGTACACGCTGCATCCATTGCAGACGCCCTATGGTTACGCGGCGGCGGCGTTGAGTCTGGTCCATGGGCTGCTGGGCGTGGTGCGGGCGGCGAACAATGATGACGATGAGTGCAATCGATTACGTCAGATAACTTCTGGTATTATGGAGCTGGTGCCGCTGCCATTGGCCAACATTGAGCTCTACTTGAAGTCCTCGAGCCCGCACTTGGCCATGGCGCACGGCTGCTTCTTGGTGCCGCTCACCTTCGATGTGGTGGCCAAGTGGCGCGACGTCGAGGACAATTCAACGATGACACTTAAGGATCTGACCCTGCTCGGCAATGTGGTCTCGCTGCTATTCCTGGGCGTCAATCAGTCCAGTAATATCTATGGGGGGATGGCGGCCATCGCCTTCGGAGCGCGCTACGGATCCGTCATGTTCGACTATTACTGGGAGGGCCTCGGAGTCCAATTCAACTTACTGGCCAACTCCGCCTTCATTATGCTAATGGCCATGACGCTGACGGCCAAGTCC---
	Drosophila_persimilis     ATGCTAGTGATCGACGCCCTGTTCAATAGCCTGCTGGTGGTCAGCTCCGGCTATGCCATGTACACCTTGCATCCGACGAAAACCCCGTACGCCTATGGGGTGGCAACCCTTAGTCTGATACACGGACTGCTGGGCGTGGGGCGGGCCGCTTGCAACGATCACGACGAGTGCAATCGGGTGCGACTGATCACATCGGGTGTCATGGAGATTGCTCCGCTGCCACTGGTCAACATCGAACTGTACCTGAAGTCG---AATCCCAGTCTGGCCTTTGCCCACAGCTTCTTTTTGGTGCCGCTTGCCTTCGATATAGTGGCCAAAATGACCGATACCGAGGACATCTCCACGGAGTCGCTCAAGGAGCTTACACTCTTGGGCAACCTGGTCTCACTGCTCTTCCTGGGCGTCAATCAGTCGAACAATATGTACGGAGCCATTGCCACTGTGGCCTTTGCGGCCCGCTACGGATCCTTGATAATCGATCACTACTGGGAAGGACGCGGATCTGACTTCAGGCTGTTGGCCAATTCCCTTTTCATTGTATTGATGACCCTCACCTTGTCGGCCAAG------
	Drosophila_pseudoobscura  ATGCTAGTGGTCGACGCCCTGTTCAATAGCCTGCTGGTGGTCAGCTCCGGCTATGCCATGTACACCTTGCATCCGGCGAAAACCCCGTACGCCTATGGGGTGGCAACCCTTAGTCTGATACACGGACTGCTGGGCGTGGGGCGGGCCGCTTGCAACGATCACGACGAATGCAATCGGGTGCGACTGATCACATCGGGTGTCATGGAGATTGCTCCGCTGCCGCTGGTCAACATCGAATTGTACCTGAAGTCG---AATCCCAGTCTGGCCTTTGCCCACAGCTTCTTTTTGGTGCCGCTTGCCTTCGATATAGTGGCCAAAATGACCGATACCGAGGACATCTCCACGGAGTCGCTCAAGGAGCTTACACTCTTGGGCAACCTGGTCTCACTGCTCTTCCTGGGCGTCAATCAGTCGAACAATATGTACGGAGCCATTGCCACTGTGGCCTTTGCGGCCCGCTACGGATCCTTGATAATCGATCACTACTGGGAAGGACGCGGATCTGACTTCAGGCTGCTGGCCAATTCCCTTTTCATTGTATTGATGACCCTCACCCTGTCGGCCAAG------
	Drosophila_sechellia      ATGCTGGTCATGGACGCGTTGTTTAACAGCCTGTTGGTGGTCAGTTCCGGCTATGCGATGTACACCCTTCACCCAATTGAAACGCCCTATGGCTATGCAACAGCGGCCTTGAGCCTGGTCCACGGAATTTTGGGGATGGTGCGGGCGGCGAGCAACGACGATGACGAGTGCAATCGGGTGCGACTGATTACGTCGGGCATCATGGAGATAGTGCCGCTGCCCCTGACCAATATCGAGCTCTATCTGAAGTCCACCAATCCGGGCCTGGCGTTGGCCCACTCCTGTTTTGTGGTGCCATTATTCTACGATATGTTGGCCAAGGTGCGTGACACCGAGGACACCTCCACGGAGACCCTGAAGGAACTCACACTGGTGGGCAACGTTGTGTCCCTGCTCTTTCTGGGCGTCAACGAGTCCAGCAATGTGTACGGCGCCATGGCTGCCATCGCTTTTGGAGCTCGCTACGCTTCCGCTTTCCTCGACTACTACTGGAAGGGACTAGGTGCCGAGTTCACCCTGCTGGCCCACTCCATGTTTGTCCTACTGATGACCATGACCCTTTCGGCGAAA------
	Drosophila_simulans       ATGCTGGTCATGGACGCATTGTTCAACAGCCTGTTGGTGGTCAGTTCCGGCTATGCGATGTACACCCTTCACCCAATCGAAACGCCCTATGGCTATGCAACAGCGGCCTTGAGCCTGGTCCACGGAATTTTGGGGATGGTGCGGGCGGCGAGCAACGACGATGACGAGTGCAATCGGGTGCGACTGATTACGTCGGGCATCATGGAGATAGTGCCGCTGCCCCTGACCAATATCGAGCTCTATCTGAAGTCCACCAATCCGGGCCTGGCGTTGGCCCACTCCTGTTTTGTGGTGCCATTATTCTACGATATGTTGGCCAAGGTGCGCGACACCGAGGACACCTCCACGGAGACCCTGAAGGAACTCACACTGGTGGGCAACGTTGTGTCCCTGCTCTTTCTGGGCGTCAACGAGTCCAACAATATGTACGGCGCCATGGCTGCCATCGCTTTTGGAGCTCGCTACGCTTCCGCTTTCCTCGACTACTACTGGAAGGGACTAGGTGCCGAGTTCACCCTGCTGGCCCACTCCATGTTTGTCCTGCTGATGACCATGACCCTTTCGGCGAAA------
	Drosophila_virilis        ATGCTATTCATGGATGCGCTGTTCAACAGTTTGCTGGTGGTTAGCTCCGGATATGCGATGTACACGCTGCAGCCAACGCAAACGCCCTACGGATATGCGGCGGCGGCAGTGAGTCTGGTCCATGGGCTGCTGGGGGTGGTGCGGGCGGCGAACAATGATGACGATGAGTGCAATCGGCTGCGCCAGATAACGTCCGGGATTATGGAGCTGGTGCCGCTGCCATTGACCAACATTGAGCTGTATCTGAAATCGTCGAGTCCGCATTTGGCCATGGCGCATGGCTGCTTTTTGGTGCCGCTGGCCTTTGATGTGGTGTCCAAATGGCGTGACATCGAGGATAACTCAACCGTTACGCTCAAGGATCTGACGCTGCTCGGCAATGTGGTGTCGCTGCTCTTCCTGGGTGTCAACCAGTCGAGCAACGTCTACGGCGGAATGGCGGCAATTGCGTTCGCTGCACGTTACGGCTCTGTCATGTTCGACTACTACTGGGAGGGTCTGGGTGTCCACTTCAATCTGCTGGCCAATTCCGCCTTCATTGTGCTAATGGCCATGACCCTGACGACCAAATCC---
	Drosophila_willistoni     ATGCTATTTATGGATGCTCTATTCAATAGCCTGCTAGTGGTTAGTTCCGGCTATGCCATGTATACATTGCATCCATTGCAGACACCGTATGGTTATACGGCAGCTGGTATTAGTTTGATGCACGGACTGCTCGGCGTTATGAGAGCCATTAAGAATGATGAAGGTGAATGCAATGGCCTACGTTTGATCACATCCGGGATAATGGATATTGTACCATTGCCATTGACCAATATTGAATTGTATCTAAGGTCATCGAGTCCACATTTGGCACTGGCTCACGCTTGTTTTGTTGTTCCGCTAGTCTATGATATAGCGGCCAAGGTGACCGACAGTGAGGATACTTCAACGGAAACCCTAAAGGAGCTCACTATGCTGGGCAATGTGGTATCAATGCTATTTCTTGGAGTCAATCAATCGAGTAATATGTACGGCAGCATGGCAGCCCTTGCATTCGGAGCACGGTACGGTCCCGTTTTATTGGACCATTATGTTGACGGTTTGGGTGCCAATTTCAATTTGTTGGCCAATTCCATGTTCATTGTGCTAATGGCTATGACTCTGACGGTTAAGCAAATC
	Drosophila_yakuba         ATGCTGCTGATGGACGCATTGTTCAACAGTCTGTTGGTGGTCAGTTCCGGCTATGCGATGTACACCCTCCACCCCCTGGAAACGCCCTATGGTTATGCAACAGCGGCCTTGAGCTTGGTTCATGGAATTTTGGGGATGGTGCGAGCGGCGAGCAATGACGATGATGAGTGCAATCGGGTGCGGCTGATTACGTCGGGCATCATGGAGATAGTGCCGCTGCCTTTGACCAATATCGAGCTCTATCTGAAGTCCACCAATCCGAGCCTGGCCTTGGCCCACACCTGTTTTGTAGTGCCATTGGTCTACGACATGATGGCCAAATTAGCTGACAACGAGGACACCTCCACGGAGACCCTAAAGGAACTCACACTCCTGGGCAACGTTGTCTCCCTGCTTTTCCTGGGCGTCAACCAGTCCAGCAATCTGTATGGCGGCATGGCTGCCATCGCTTTTGCAGCTCGCTACGGTTCTGTTATCCTCGACTACTACTGGAAGGGACTTGGTGCCAAGTTCAACCTGCTGGCCCACTCCATGTTTGTCGTCCTGATGACCATGACGCTTTCGGCAAAA------

;



END;

BEGIN TREES;
	Title fly_phylogeny;
	LINK Taxa = Taxa;
	TRANSLATE
		1 Drosophila_melanogaster,
		2 Drosophila_ananassae,
		3 Drosophila_erecta,
		4 Drosophila_grimshawi,
		5 Drosophila_mojavensis,
		6 Drosophila_persimilis,
		7 Drosophila_pseudoobscura,
		8 Drosophila_sechellia,
		9 Drosophila_simulans,
		10 Drosophila_virilis,
		11 Drosophila_willistoni,
		12 Drosophila_yakuba;
	TREE tree_1 = ((4:0.11476940268550095,(5:0.10284627994071588,10:0.06466471721674015)inode9:0.028107811216892046)inode8:0.058332917388477575,(11:0.1740307288935079,((6:0.007952174452892508,7:0.003220578388603673)inode6:0.12008827375416617,(2:0.10682155767321652,((3:0.024748973730429297,12:0.022223872445772546)inode3:0.007508225411469308,(1:0.013703958966746402,(8:0.008887129111435308,9:0.008402377515601245)inode10:0.008241321390669671)root:0.01626751927252096)inode2:0.0808072512155266)inode4:0.05346497847295387)inode5:0.05051801556694599)inode7:0.058332917388477575)[% ] [% ] [%  setBetweenBits = selected ];

END;


BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  576;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  576;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Jukes-Cantor':  1 -  576;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1397059327115;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 8483179407815590304;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 7867374378718939569;
			mqVersion 275;
			checksumv 0 3 1488716306 null  getNumChars 576 numChars 576 getNumTaxa 12 numTaxa 12   short true   bits 15   states 15   sumSquaresStatesOnly 148590.0 sumSquares 148590.0 longCompressibleToShort false usingShortMatrix true   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState true false 100;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 1032 621;
			setLocation 8 22;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			setActive;
			desuppress;
		endTell;
		endTell;
end;