NEXUS
[File created by TreeBASE:  7/26/07  21:02:34]
[Matrix accession#: M1497]

BEGIN TAXA;
	TITLE M1497;
	DIMENSIONS  NTAX=13;
	TAXLABELS
		Thermoplasma_acidophilum	Halobacterium_marismortui	Halobacterium_halobium	Methanococcus_kandleri	Methanococcus_jannaschii	Archeoglobus_fulgidis	Pyrococcus_woesii	Pyrococcus_horikoshii	Thermococcus_celer	Pyrobaculum_aerophilum	Aeropyrum_pernix	Desulfurococcus_mobilis	Sulfolobus_solfataricus
	;
END;

BEGIN CHARACTERS;
	TITLE M1497;
	DIMENSIONS NCHAR=269;
	FORMAT DATATYPE = PROTEIN SYMBOLS = " 1 2 3 4 " MISSING = ? GAP = -  ;
	MATRIX
		Thermoplasma_acidophilum        STLVGRLLYEHGEIPAHIIEEYKEAEQKGKTFEFAWVMDRFKEERERGVTIDLAHRKFETDKYYFTLIDAPGHRDFVKNMITGTSQADAAILVISATREHAFLARTLGVPQMVVAINKMDPYSEKRYNEVFVPISGYKGDNVPWYPTLLQALDPEKPINKPLRIPVEDVGRVETGVLKGDKVIFLPADKQGDVKSIMHAEPGDNIGFNIAPGYKPVFHVHTAQVACRIDEIVKTLNDFIKNGDVAIVKVIPLVIEKVSEIPQLGRFAVL
		Halobacterium_marismortui       STLVGRLLYETGSVPEHVIEQHEEAEEKGKGFEFAYVMDNLAEERERGVTIDIAHQEFSTDTYDFTIVDCPGHRDFVKNMITGASQADNAVLVVAATQEHVFLARTLGIGELIVAVNKMDDYGESEYKQVFIPVSAFEGDNIGWYEILLEALNPEPPTDAPLRLPIQDVGRVETGILNGDNVSFQPSDVSGEVKTVMHAEPGDNVGFNITEGYTPVFHAHTAQVACTVESIDKKIDDFIQNGDAAVVTVRPLSIEPSSEIPELGSFAIR
		Halobacterium_halobium          STMVGRLLYETGSVPEHVIEQHEEAEEEGKGFEFAYVMDNLAEERERGVTIDIAHQEFTTDEYEFTIVDCPGHRDFVKNMITGASQADNAVLVVAATREHVFLSRTLGIDELIVAVNKMDDYDESKYNEVFIATSAFEGDNVPWYPTLLEALNPQPPTDADLRLPIQDVGRIETGVMNGDNVSFQPSDVGGEVKTIMHAEPGDNVGFNITAGYTPVFHAHTAQVACTIESIDKKMDDFIQSGDAAVVTVRPLSLEPSSEIPELGSFAVR
		Methanococcus_kandleri          STTVGRLLLDGGAIDPQLIVRLKEAEEKGKGFEFAYVMDGLKEERERGVTIDVAHKKFPTAKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVNVTREHVFLIRTLGVRQLAVAVNKMDNFSEADYNELFVPVASLHGDNVPWYPTIAEVIDPEKPTNLPLRLPIQDVGRVETGIIKGDKVVFEPAGAIGEIKTVMHAEPGDNIGFNLTDGYTPVFHTHTAQIACTFAEIQKKLNDFLKAGDAAIVKLIPMVIESVKEIPQLGRFAIR
		Methanococcus_jannaschii        STTVGRLLYDSGAIDPQLLEKLREAQERGKGFEFAYVMDNLKEERERGVTIDVAHKKFETQKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVDVTREHMFLARTLGIKQIAVAINKMDNYSQEEYEKMFIPTASLKGDNVPWYPTLVEALDPEKPTNLPLRIPIQDVGRVETGILRGDKVVFEPAGVSGEVKSIMHAEPGDNIGFNITVGYTPVFHAHTAQVACTFIELLKKLDQFLKTGDAAIVKIKPMVIENVREIPQLGRFAIR
		Archeoglobus_fulgidis           STLIGRLLYETGEIPEHIIEKMKEAQEKGKTFEFAWVMDRLKEERERGVTIDVAHRKFQTDKYYITIVDCPGHRDFIKNMITGASQADAAVLVMDVTREHIFLARTLGINQIIVAINKMDNYDQKEYEAAFIPVSAYYGDNVPWYPTLLEAFDPEKLVDKPLRIPIQDVGRVESGVLRGDKVVFEPAGVSGEVKSIMHAYPGDNIGFNITVGYTPVVHAHTAQIACRFVELQKKIDQFLKTGDAAIVKLEPMVIERVKDIPPMGRFAIR
		Pyrococcus_woesii               STTIGRLLYDTGNIPEQIIKKFEEMGEKGKSFKFAWVMDRLREERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATKEHAFLARTLGIKHIIVAINKMDNYNQKRFEEVVIPISAWEGENVPWYPTLIEALDPEKPVDKPLRIPIQDVGRVETGKLRGEVVIFEPASIQGEVKSIMHALPGDNIGFNITVGYSPVLHAHTAQVPVRFEQLLAKLDQFIKTGDAAIVILRPVVLEPVKEIPQLGRFAIR
		Pyrococcus_horikoshii           STTIGRLLYDTGNIPETIIKKFEEMGEKGKSFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATKEHAFLARTLGIKHIIVTINKMDNYDQKVFEKVVIPTSAWNGDNVPWYPTLIEALDPEKPIDKPLRIPIQDVGRVETGKLKGDVVIFEPASIQGEVKSIMHALPGDNIGFNITVGYSPVLHAHTAQIPVRFEQILAKVDQFIKTGDSAIVVLRPVVLEPVKEIPQLGRFAIR
		Thermococcus_celer              STTIGRLLFDTANIPENIIKKFEEMGEKGKSFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAVTKEHAFLARTLGINNILVAVNKMDNYDEKKFKAVIIPISAWEGDNVPWYPTLIEALDPPKPTDKPLRIPIQDVGRVETGVLRGDVVIFEPASIQGEVKSIMHALPGDNIGFNITVGYTPVLHAHTLQVAVRFEQLLAKLDQFIKTGDSAIVVLRPMVIEPVKEIPQMGRFAIR
		Pyrobaculum_aerophilum          STLVGRLLYETGYVDEKALKEIEMAKKIGKDFAFAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFVKNMIVGASQADAALFVISAGREHLFLIRTLGVQQIVVAVNKMDNYDQKRYEQVFIPVSAIKGDNIPWYPTLLEVFDPQRPVDKPLRMPIQDVGRVETGVLKGDRVVIVPPAKVGDVRSITHAQPGDNIGVNIGPGYAPVMHIHTATVPVQITELVSKLDQFIKQGDVAIVKIKPVVAEKFSDFPPLGRFALR
		Aeropyrum_pernix                STLVGHLLYRLGYIEEKKLKELEQAKSRGKSFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSATREHLLLARTMGIEQIIVAVNKMDNYDQKRYEFVFIPVSAWKGDNLPWYPTLVEALDPAKPVDKPLRIPVQNVGRVETGVLRGDKVVFMPPGVVGEVRSIMHAEPGDNIGFAITVGYTPVIHVHTASVSSRIIEIKAKLDQFLKAGDAAIVRFKPLVVEKFSEIPQLGRFAMR
		Desulfurococcus_mobilis         STMTGHILYRLGYFDEKTVKMIEESKKMGKSFKFAWLLDRMKEERERGVTISLSYMKFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSATREHAILARTMGINQLIVAINKMDPYSEKRYNEIFIPISAWTGENLPWYPTLVEALDPPKPINKPLRIPIQDVGRVETGVLKGDKLVFMPAGLVAEVKTITHAEPGDNIGFNIAVGYTPVIHVHTASVACRITEIIAKIDHFLKQGDIAIVKFKPLVVEKYSDFQGLGRFAMR
		Sulfolobus_solfataricus         STLVGRLLMDRGFIDEKTVKEAEAAKKLGKSEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSATREHIILAKTMGLDQLIVAVNKMDPYDEKRYKEIFVPVVAPSGDNIKWYPTLEEYLDPPKPVDKPLRIPIQDRGRVESGVLKGDKIVFMPAGKVGEVRSITHAEPGDNIGFNLANGYTPVLHVHTASVACRVSELVSKLDQFLKQGDVAIVKFKPLCVEKYNEFPPLGRFAMR
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;