NEXUS
[File created by TreeBASE:  7/26/07  21:02:34]
[Matrix accession#: M1498]

BEGIN TAXA;
	TITLE M1498;
	DIMENSIONS  NTAX=14;
	TAXLABELS
		Thermoplasma_volcanium	Thermoplasma_acidophilum	Pseudomonas_mevalonii	Archeoglobus_profundus	Archeoglobus_fulgidis	Ferroglobus_placidus	Archeoglobus_veneficus	Enterococcus_faecium	Enterococcus_faecalis	Staphylococcus_haemolyticus	Staphylococcus_aureus	Staphylococcus_epidermidis	Streptococcus_pyogenes	Streptococcus_pneumoniae
	;
END;

BEGIN CHARACTERS;
	TITLE M1498;
	DIMENSIONS NCHAR=251;
	FORMAT DATATYPE = PROTEIN SYMBOLS = " 1 2 3 4 " MISSING = ? GAP = -  ;
	MATRIX
		Thermoplasma_volcanium            ENVITTIEMPLGIAVNFLINGKDYLIPMAIEEPSVVAAASNAAKVAFNAYATEPVMIGEIQVAKMNISRILELANTRSKTAKDIEVNVIVHLIVDVRDAMGANVVNSMCEYVAPEIGRVNLRILSNRVAYASAVFSKDIIEAVDNIVEAYRMDIYRASTKIMNGIDAVLVATMNDWRAAANLAKYELVGTIEIPIAVGTVGGTGIDKARIARKILGVATEVLAAVGLAQNFSAVRALATEGIQRGHMELHA
		Thermoplasma_acidophilum          ENVITTIEMPMGIAVNFRINDRDYLIPMAIEEPSVVAAASNAAKVAFRAFATEPIMIGEIQVAKIALQKILDMANTRSKTARDLEVEIIVHLIVDVRDAMGANVINSMCEYVAPEIGRVNLRILSNRIAYASAVFPKEIIEAVDSIIEAYHMDIYRAATKIMNGVDAVLIATMNDWRSAANLARYELVGSIEIPMAVGTIGGTRIEKARIAMKILGVAKEVLAAVGLAQNFAALRALATEGIQRGHMELHS
		Pseudomonas_mevalonii             ENVIGTFELPYAVASNFQINGRDVLVPLVVEEPSIVAAASYMAKLAFTTSSSAPLMHAQVQIARLSLDEIIELANRKDQLCRDIEVHTVAHLIVDVRDAMGANTVNTMAEAVAPLMGQVRLRILSNRLARAQVRITPQQLAVIEGILDAYAFDPYRAATKIMNGIDPLIVATGNDWRAVAGLTTWELVGTLEMPMPVGLVGGAKHPLAQLSLRILGVAQAIAVAVGLAQNLGAMRALATEGIQRGHMALHA
		Archeoglobus_profundus            ENVIGTFELPIGIATNFLIDGKDYLVPMVIEEPSVVAAASHGAKIAFSTLYTGSIMIGQIQVAKFEVDEIIEKANEIESSCKDLTVRVVVHLLIDVKDAMGANFINSVCERIAPFIGKVLLRILSNRLAIAKAVFDKKAVEVVEGIIKAYELDIYRCATKIMNGVCAVLIATGNDFRAVSALTHYELVGYIELPMSVGVVGGAKNPLARICLKILGVAEEVIASVGLAQNFAALRALVTEGIQRGHMELHA
		Archeoglobus_fulgidis             ENVIGTFELPLGIATNFLIDGKDYLIPMAIEEPSVVAAASNAARMAFTTDYTGSLMIGQIQVAKFEVDEIIERANECDPMCKDIEARVIVHLIVDVKDAMGANAVNTMCEKVAPFIGKVYLRIISNRLARAKAVFDKDVIEVVEGIMLAYAFDPFRCATKIMNGISALMIATGNDFRAIAGLTTYELVGTIEIPMAVGVIGGAKNPLAKISLKILGVAEEVAAALGLAQNFAALRALATEGIQRGHMELHA
		Ferroglobus_placidus              ENVIGTFELPLGIATNFLIDGKEYLIPMAIEEPSVVAAASNAAKMAFFTDYSGNIMIGQIQVAKFEVEEIIEKANEQDPICKDVEARVIVHLLVDVKDAMGANAVNTMAEAVAPLIGKVYLRIISNRLARAKAIFDKNVIEVVEGIMQAYAFDPFRCATKIMNGISAVVIATGNDFRAVAGLTRYELVGTIELPMAVGVIGGAKNPLAKICLKILGVAEEVLAAVGLAQNFAALRALATEGIQRGHMELHA
		Archeoglobus_veneficus            ENVIGTFELPLGIATNFLIDGKDYLIPMAIEEPSVVAAASNAAKMAFVTQATPPVMIGQIQVAKIEVDEIIQKANEQDSICKDIEARVIVHLLVDVRDAMGANAVNTMAEAVAPIIGKVRLRIISNRLARAKAVFDKDAIEVVDGIIEAYAFDPYRCATKIMNGVSAVVIATGNDFRAVAGLTTYELVGTIELPVAVGIVGGASNPMARVCLKILGVAEEVIAAVGLAQNFAALRALATEGIQRGHMELHA
		Enterococcus_faecium              ENQVSEVEIPMGIAQNFQINGKKKWIPMATEEPSVIAAASNGAKICICAETPQRLMRGQIVLVINAVEELILCANESYPSVQDISTRESIDFLVDVKDAMGANMINSILESVANKLEEILFSILSNSLASACCEIPFERLQIAKKIQQAGEYDPYRAATKIMNGIEAVVAATGNDTRAVASLTDWQLVGKLTVPLAVATVGGANLPKAKASLAMLDIAKEVIAAVGLAQNLAALRALVTEGIQKGHMGLQA
		Enterococcus_faecalis             ENQISETEVPMGVGLHLTVDETDYLVPMATEEPSVIAALSNGAKIAFKTVNQQRLMRGQIVFLIDELTEIFQQAELSYPSLRDLQYRASVDFLVDVKDAMGANIVNAMLEGVAELFQKILFSILSNSVVTMKTAIPVSRLEIAEKIVLASRYDPYRAVTKIMNGIEAVVLATGNDTRAVASLTSWTLIGEISVPLALATVGGAKLPKSQAAADLLAVAKEVVAAVGLAQNLAALRALVSEGIQKGHMALQA
		Staphylococcus_haemolyticus       ENVIGQGTLPVGLLPKIIVDDKEYVVPMMVEEPSVVAAASYGAKLVFKTVKSERLMIGQIVFLAQAIPQIKQIAAEAYPSYRRIEIDTSLKVFVDTKDAMGANMLNTILEAITAHMRDVLMSILSNSVVRVQGEIDIKDLEVAQRMERASVLDIHRAATKVMNGIHAVVLATGNDTRGAASIATWKLVGTIEVPMTLAIVGGGKLPIAKASLELLNVAQEVVAAVGLAQNFSACRALVSEGIQKGHMSLQY
		Staphylococcus_aureus             ENVIAQGALPVGLLPNIIVDDKAYVVPMMVEEPSVVAAASYGAKLVFKTVSSERIMIGQIVFLSADIKQIHKIADEAYPSYQRIAIDTSLKVFVDTKDAMGANMLNTILEAITAFLSDILMSILSNSVVKVQGEIDVKDLEVAKRMERASVLDIHRAATKVMNGIHAVVLATGNDTRGAASIATWRLIGTIEVPMTLAIVGGGKLPIAKASLELLNVAQEVVAAVGLAQNFAACRALVSEGIQQGHMSLQY
		Staphylococcus_epidermidis        ENVIGQGALPVGLLPRIIVDDKEYVVPMMVEEPSVVAAASYGAKLVFKTISSERLMIGQIVFLANSISQIHQIADEAYPSYQRIEIDTSLKVFVDTKDAMGANMLITILEAITAHLQNVLMSILSNSVVQVQGEIDIEDLEVAQRMERASVLDIHRAATKVMNGIHAVVLATGNDTRGVASIATWELVGTIEVPMTLATVGGGKLPIAKASLNLLNVAQEVVAAVGLAQNFSACRALVSEGIQQGHMSLQY
		Streptococcus_pyogenes            ENVLGRLALPFSIAPDFLVNGSTYQMPFVTEEPSVVAAASFAAKLIFKAQTLNRQMIGQIVLAKAAIKKLIALANKAYPSARTIHLEEIFYLTVDTQEAMGANMVNTMMEALVPDLGHCLMAILSNSLVTTSCEIPVRLLQLAQKIELASRLDPYRATTKIFNGIDAVVIATGNDWRAIAGLSQWHLLGQMTLPMPIASKGGSGNPTVSIAHDLLNQAKTLIASVGLAQNFAALKALTSSGIQAGHMKLHA
		Streptococcus_pneumoniae          ENVVGTFSLPYSLVPEVLVNGQGYTVPYVTEEPSVVAAASYASKIIFTAQVHQRQMIGQVALAQEKIAELLELANQAYPSARDLHVEQVVYIHVDTQEAMGANMLNTMLEALKPVLGQSLMGILSNSLVTASCRIAFRYLEIAEKIALASQFDPYRAATKIFNGIDAILIATGNDWRAIAGLSCWTLVGEMTLPMPVATKGGSGNPRVALSHDLLGNAREIIVSIGLAQNFAALKALVSTGIQQGHMKLQA
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;