NEXUS
[File created by TreeBASE:  7/26/07  21:02:35]
[Matrix accession#: M1506]

BEGIN TAXA;
	TITLE M1506;
	DIMENSIONS  NTAX=15;
	TAXLABELS
		Artemisia_annua_1	Raphanus_sativus_1	Arabidopsis_thaliana_1	Morus_alba	Gossypium_hirsutum_1	Tagetes_erecta_1	Camptotheca_acuminata_1	Nicotiana_tabacum	Nicotiana_sylvestris	Capsicum_annuum	Solanum_tuberosum_1	Lycopersicon_esculentum_1	Catharanthus_roseus	Hevea_brasiliensis	Cucumis_melo
	;
END;

BEGIN CHARACTERS;
	TITLE M1506;
	DIMENSIONS NCHAR=251;
	FORMAT DATATYPE = PROTEIN SYMBOLS = " 1 2 3 4 " MISSING = ? GAP = -  ;
	MATRIX
		Artemisia_annua_1               EMPIGYVQVPVGVAGPLLLNGGEFMVPMATTEGCLVASTNRGCKAIATAILLKDGMTRAPVVLKFYLDTLSVVFNKSSRFLQNIQCSIYIRFTCSTGDAMGMNMVSKGVQNVLDFLMDVIGISGNFSVVCEAVITEEVVRTTVPALVELNMLSAIAGSLFAANIVSAVFIATGQDPAQNIEITMMELHVSVTMPIEVGTVGGGQLASQSACLNLLGVAQLIVAGSVLAGELSLMSAISAGQLVKSHMKYNR
		Raphanus_sativus_1              EMPVGYVQIPVGIAGPLLLDGCEYSVPMATTEGCLVASTNRGCKAMGTSTVVKDGMTRAPVVLKFYLDTLAVVFNRSSRFLQSVKCTLYVRFSCSTGDAMGMNMVSKGVQNVLEFLMDVIGISGNFSVVCEAVIRGEIVNTSVAALVELNMLSAVAGSLFASNIVSAVFIATGQDPAQNVEITMMEIHVSVTMPIEVGTVGGGQLASQSACLNLLGVSRTIVAGAVLAGELSLMSAIAAGQLVKSHMKYNR
		Arabidopsis_thaliana_1          EMPVGYIQIPVGIAGPLLLDGYEYSVPMATTEGCLVASTNRGCKAMATSTVLKDGMTRAPVVLKFFLDTLAVVFNRSSRFLQSVKCTIYVRFCCSTGDAMGMNMVSKGVQNVLEYLMDVIGISGNFSVVCEAVIRGEIVNTSVAALVELNMLSAVAGSLFASNIVSAVFIATGQDPAQNVEITMMEIHISVTMPIEVGTVGGGQLASQSACLNLLGVARRIVAGAVLAGELSLMSAIAAGQLVRSHMKYNR
		Morus_alba                      EMPVGYVQIPVGIAGPLLLDEFEYSVPMATTEGCLVASTNRGCKAIATSVLLRDGMTRAPVVLKFFVDTLAVVFNRSSRFLQGIQCAIYMRFSCSTGDAMGMNMVSKGVQNALDYLMDIIGISGNFSVVCEAVIKEEVVKTNVDALVELNMLSAVAGALYASNIVSAVFIATGQDPAQNIEITMMELHISVTMPIEVGTVGGGQLASQSACLNLLGVARLIVAGSVLAGELSLMSAIAAGQLVKSHMKYNR
		Gossypium_hirsutum_1            EMPVGYVQIPVGIAGPLLLNGREYSVPMATTEGCLVASTNRGCKAIATSILLKDGMTRAPVVLKFYLDTLAVVFNRSSRFLQSIKCAIYLRFTCSTGDAMGMNMVSKGVQNVLDFLMDVIGISGNFSVVCEAIIEGDVVRTSVESLVELNMLSAMAGALFASNIVTAIYIATGQDPAQNVEITMMELHISVTMPIEVGTVGGGQLASQSACLNLLGVSRMIVTGAVLAGELSLMSALAAGQLVKSHMKYNR
		Tagetes_erecta_1                EMPVGYVQIPVGIAGPLLLNGTEFSVPMATTEGCLVASTNRGCKAIATCILLKDGMTRAPVVLKQFLDTLAVVFNKSSRFLQSVQCAIYNRFCCATGDAMGMNMVTKGVQNVLDFLMDVMGISGNYSVVCEAIIKEEVVQTTVPALVELNMLSAMAGALFASNIVSAVYLATGQDPAQNVEITMMELHVSVTMPIEVGTVGGGQLASQSACLNLLGVARVIVAGSVLAGELSLMSAISAGQLVKSHMKYNR
		Camptotheca_acuminata_1         EMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASTNRGCKAIATSVLLRDAMTRAPVVLKFFLETLAAVFNSSSRFLQNIKCAIYMRYSCSTGDAMGMNMISKGVQNVLDFLMDVIGISGNYSVVCEAVIKEEVVKTNVASLVELNMLSAMAGALFASNIVSAVYLATGQDPAQNVEITMMELHVSVTMPIEVGTVGGGQLASQSACLNLLGVARLIVAGSVLAGELSLMSAIAAGQLVNSHMKYNR
		Nicotiana_tabacum               EMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASTNRGCKAIAISVLLRDGMTRAPVVLKFFVETLSLVFNKSSRFLQSIQCAIYMRFSCSTGDAMGMNMVSKGVQNVLDYLMDVIGISGNFSVVCEAIITEEVVKTEVASLVELNVLSAMAGALFASNIVSAVYLATGQDPAQNVEITMIELHISVTMPIEVGTVGGGQLASQSACLNLLGVARLIVAGSVLAGELSLMSAISAGQLVKSHMKYNR
		Nicotiana_sylvestris            EMPIGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASTNRGCKAIATSVLLRDGMTRAPCVLKFFVETLAAVFNQSSRFLQRIQCAIYMRFVCSTGDAMGMNMVSKGVQNVLDYLMDVIGISGNFSVVCEAIITEEVVKTEVAALVELNMLSAMAGALFASNIVSAVYIATGQDPAQNIEITMMELHVSVTMPIEVGTVGGGQLASQSACLNLLGVARLIVAGSVLAGELSLMSAISAGQLVKSHMKYNR
		Capsicum_annuum                 EMTIGYVQIPVGIAGPLLLNGREYSVPMATTEGCLVASTNRGCKAIATSILLRDGMTRAPCVLKFFVETLANVFNQSSRFLQRIQCAIHMRFVCSTGDAMGMNMVSKGVQNVLDYLMDVIGISANFSVVCEAIITEEVVKTEVAALVELNMLSALAGALFASNIVSAVYIATGQDPAQNIEITMMELHISVTMPIEVGTVGGGQLASQSACLNLLGVARLIVAGSVLAGELSLMSAISAGQLVNSHMKYNR
		Solanum_tuberosum_1             EMPIGYVQIPVGIAGPLLLNGKEFSVPMATTEGCLVASTNRGCKAIATCIVLRDGMTRAPCVLKFFVETLANVFNQSSRFLQRIQCAIYMRFVCSTGDAMGMNMVSKGVQNVLDYLMDVIGISGNFSVVCEAIITEEVVKTEVAALVELNMLSAMAGALFASNIVSAVFIATGQDPAQNIEITMMELHISVTMPIEVGTVGGGQLASQSACLNLLGVARLVVAGSVLAGELSLMSAISAGQLVNSHMKYNR
		Lycopersicon_esculentum_1       EMPIGYVQIPVGIAGPLLLNGKEFSVPMATTEGCLVASTNRGCKAIATCILLRDGMTRAPCVLKFFVETLANVFNQSSRFLQRIQCAIYMRFVCSTGDAMGMNMVSKGVQNVLDYLMDVIGISGNFSVVCEAIITEEVVKTEVAALVELNMLSAMAGALFASNIVSAVFIATGQDPAQNIEITMMELHISVTMPIEVGTVGGGQLASQSACLNLLGVARLVVAGSVLAGELSLMSAISSGQLVNSHMKYNR
		Catharanthus_roseus             EMPVGYVQLPVGIAGPLLLDGREYMLPMATTEGCLVASTNRGCKAIANSVLLRDGMTRAPVVLKFYMETISVVFNKSSRFLQSVQCAIYIRFSCSTGDAMGMNMVSKGVQNVLEFLMDVLGISGNFSVVCEAIIKEEIVKTEVAALIELNMVSAIAGALFASNIVSAIFIATGQDPAQNVEITMMELHISVTMPIEVGTVGGGQLASQSACLNLLGVSRLIVAGSVLAGELSLMSAISAGQLVRSHMKYNR
		Hevea_brasiliensis              EMAIGYVQIPVGIAGPLLLDGKEYTVPMATTEGCLVASANRGCKAIATSVLLRDGMTRAPVVLKFFMDTIAVVFNKSSRFLQSVQCAIYMRFSCSTGDAMGMNMVSKAVQNVIDYLMDVIGLTGNFSVVCEAIIKEEVVKTNVAALVELNMISAVAGSLFASNMVTAVYIATGQDPAQNVEITMMELHISVSMPIELGTVGGGQLASQSACLNLLGVSRLIVAGSVLAGELSLMSAIAAGQLVNSHMKYNR
		Cucumis_melo                    EMPVGYVQIPVGIAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIATSMLLKDGMTRAPVVLKFFLDTLAVVFNRSSRFLQSIRCSIYVRFCCSTGDAMGMNMVSKGVQNVLEFLMEVIGISGNFSVVCEAVIKDEVVRTSVASLVELNMLSAMAGALFSSNIVSAIFLATGQDPAQNVEITMMELHISVTMPIEVGTVGGGQLASQSACLNLLGVSRLIVAGSVLAGELSLMSAIAAGQLVRSHMKYNR
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;