NEXUS
[File created by TreeBASE:  7/26/07  21:02:35]
[Matrix accession#: M1507]

BEGIN TAXA;
	TITLE M1507;
	DIMENSIONS  NTAX=17;
	TAXLABELS
		Trypanosoma_brucei	Dictyostelium_discoideum	Plamodium_falciparum	Trichomonas_vaginalis	Giardia_lamblia	Oxytricha_trifallax	Euplotes_octocarinatus	Yarrowia_lipolytica	Candida_albicans	Saccharomyces_cerevisiae	Schizosaccharomyces_pombe	Neurospora_crassa	Nicotiana_tabacum	Arabidopsis_thaliana	Caenorhabditis_elegans	Drosophila_melanogaster	Homo_sapiens
	;
END;

BEGIN CHARACTERS;
	TITLE M1507;
	DIMENSIONS NCHAR=269;
	FORMAT DATATYPE = PROTEIN SYMBOLS = " 1 2 3 4 " MISSING = ? GAP = -  ;
	MATRIX
		Trypanosoma_brucei              STISGHLLMEKGLVDQREMEKLREAEVHHRGWEYAYVMDVSEDERTKGITRETGAAYVETEKRRITVLDAPGHKAFVPSMIGGATQADVCVLVISSTREHAMLVRTCGVKQMICVINKMDNWSKERYDAIFIPIAGLTGDNLPWYPTMMSFIDPETKSENVLCIPLVGSGKVESGSVAGEKIQILPSKQEAVVEGIIECYPGDNVHLRICAGSRVMLHAHAAQEEVSFHKLLAKVDTHVKAGDVVIARMEALVLEPHKDFDKMGRFMLR
		Dictyostelium_discoideum        STLSGSIMVLTGQVDPHTLAKYREAKENHRGWIYAYIMDTNEEERTKGKTVEVGRAHFETTKKRYTILDAPGHRLYVPNMIIGAAQADVGILVISSTIEHARLAKMIGIKYLVVFVNKMDKWSKARYDEIFVPGSGYGTLNVDWYPSLIGTLDMERNEGGALRIPITTSGKVESGTISGQSIHIMPGKTKVEVISLGDARPGENITIAFTPSFSAIFHAHTAVEDVTVKSLIATIDTFCKVGDAVKCRLVAVCLEEFTTNPQLARFTIR
		Plamodium_falciparum            STACGNILYILGYVDDRTIEKYREAKEKSRSWFLAFIMDINEEERQKGKTVEVGRAHFETKDRRFTILDAPGHKNFIPNMISGAAQADIGVLIISATREHTLLARTLGINQLIVAINKMDNWSESRYEEIFVPISGLTGQNLSWYPTLFNILNPPWDENGPLRIPLLEGGKIESGTLYNMNCTLMPNKVKVKVMNVLEAKPGENVRVRITAGYFCIFHAHTACEEIQFVEMLEVIDKFIKSDCIVTAHFLPVCVEVYDNLPQLGRFTLR
		Trichomonas_vaginalis           STLCGHVLYQAGCVDQRTIEQYAESAKEGRSWYFSWVMDLSKEERSKGKTEEVGVAHFETAQNKYTILDAPGHRSYVPQMIGGAVQADVAVLVISATSEHLLIARTAGVREIIIVVNKMDKWSKERFDQIYIPIAALTGFNLPWYPTLFEKLDPVRNETDSFRLPVIDRGKLEKGVIKGDQVIVMPSRKLGTISSIVDAVPGDNIRVAITAGYEAMCHIHTETVPVSVEKL--RTLRFIKRGCLAEVILKPICVEVAKDFPQLGRFIIR
		Giardia_lamblia                 STISGHLVSDLGKLDKRQLEKLQQAKALNRSWKYAFAMDTSEEEREKGKTVECARESFLTPNGRITIIDAPGHKGFVHNMISGAAQADTAILVISATSEHALLAYVNGIKQIVCLINKMDEYCKKRYDSIFLPISGFTGENLEWYPSFLDLLDPKRDTKSPLCACVSGHVKVEQGKMSGDTVLCLPENDILDIEGEEEAKAGDNVRIKITSGYSCVAHINLQQVGCQIRAILADLDYIVSTEPLKVRRPTPVCVQSTPGHEALGRIILR
		Oxytricha_trifallax             STISGNLMYLMGAVDQRTIQKYEEAKEKNRSWWLAYVMDVSEEEKAKGKTVEVGRANIETPKKRWTIFDAPGHKNYVPNMIMGAALADFGALVISATREHIQLAKSLGISKIVVAVNKMDKWSKDRYTEIFVPISGLNGDNLNWYPTLLEILDPQRDPEGPLRIPVLDKGKVESGTVKGDQLAVMPTNLLAQVQTINSAKPGENVQLRLSKGYQFILHIHTVAEEASIIS-SVEKNQFVQSYAKAVCRIQPIPLEKFEFLPQMGRFTMR
		Euplotes_octocarinatus          STICGNLMFMTGMVDERTTEKFQEAKEKNRSWWLAYVMDINDDEKSKGKTVEVGRATMETPTKRYTIFDAPGHKNYVPDMIMGAAMADVAALVISATREHAQLARSLGVSKLVVVVNKMDQWNEARYNDIFIPISGLNGQNITWYPTLIEILDPKRNADGPLRVPVLDKGKVESGVIKGSKLAVMPNNLKCQVVGINCANPGENIQIKITPGYKSMMHLHTISDEIVIAG-VYELDKYCKSGSKVIVKISPVCLEKYEFIEHMGRFTLR
		Yarrowia_lipolytica             STLGGQILYLTGTVNKRTIEKMKEAADAGRGWYLSWVMDINKEERAEGKTVEVGRSYFETEKRRYTLLDAPGHKMYVPSMIGGAAQADAGILVISATREHAMLAKTQGINKLVIAINKMDNWSKERYDECFMPVSGFTGANVPWYPSLLELLDLERNLTGPFMLPISNKGKIEVGQVKGDNLVVMPSKVPVEVTTLKEASVGEQIRLKLSTGFSCVMHIHTAAEEVTFTALLHKLEAFAKKGMKIIARLEPVCMDEFSKTPQLGRFTLR
		Candida_albicans                STMGGNILYLTGSVDKRTVEKYREAKDAGRGWYLSWVMDTNKEERNDGKTIEVGKAYFETDKRRYTILDAPGHKMYVSEMIGGASQADVGILVISATREHALLAKTQGVNKIIVVVNKMDGWSKERYQECYMPVSGYTGAGLPWYPSLLEYLDMNRKINGPFMMPVSGKGKIESGHVKGTNLIMMPNKTPIEVLTINEAFSGEQVRLKLSNGFSCVMHLHTAIEEVKFIELKHKLEAFAKKGMKIIAILELVCAETYKDYPQLGRFTLR
		Saccharomyces_cerevisiae        STMGGNLLYLTGSVDKRTIEKYREAKDAGRGWYLSWVMDTNKEERNDGKTIEVGKAYFETEKRRYTILDAPGHKMYVSEMIGGASQADVGVLVISATREHALLAKTQGVNKMVVVVNKMDNWSKERYDQCFMPVSGYSGANLPWYPTLLEYLDVDRHINAPFMLPIAAKGKIESGHIKGQSTLLMPNKTAVEIQNINEAMCGEQVKLRIAAGFSCVMHVHTAIEEVHIVKLLHKLEAFAKKGMKVIAVLEPVCVETYQDYPQLGRFTLR
		Schizosaccharomyces_pombe       STLGGNILFLTGMVDKRTMEKIREAKEAGKSWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISATREHAVLARTQGINHLVVVINKMDQWSEERYKECYMPVSAYTGQNVPWYPSLLEYLDLERKVNAPFIMPIASKGKIEAGSIKNSNVLVMPINQTLEVTAIDESICGDQVRLRLTTGYSCVMHIHTAVEGVSFAKLLHKLDMFATKGMKIIAELEPVCMERFEDYQYMGRFTLR
		Neurospora_crassa               STLGGAILYVTGMVDQRTLDKYREAKDMGRTWYLSWALDLTNEERAKGKTVEVGRGFFETDKRKYSILDAPGHKTYVPNMIGGASQADVGILVISATREHAMLAKTQGVNKLVVVINKMDNWSEERYKECFMPVAAQQTMGIPWYPSLLEYLDLERKVNAPFMMAVSGKGKIEAGVIKGMSLIMMPNKQSIEISAVGEAQCGEQVRLRLTAGFNCVLHVHAAIEEVTFAALLHKLQSHAKKGDSIIARLESVCVERFEDYPQMGRFTLR
		Nicotiana_tabacum               STIGGQILLLSGQVDDRTIQKYREAKDKNRSWYMAYIMDTNEEERVKGITVEVGRAHFETDTTRFTILDAPGHKSYVPNMISGRSQADIGLLVISATREHVQLAKTLGVTKFLVVVNKMDNWSKERYDEIFLPISGLLGSNLPWWPCLFETLDPPRDPNGPLRMPIIDKGKIESGSIHGDNLLIIPNKAAVKVLAICDVGPGENVRVRFTAGYKAVLHIHSVVEECEIVELMQQIDLFVKNGAIVLCRVQLICVEKFSDFAQLGRFTLR
		Arabidopsis_thaliana            STIGGQILFLSGQVDDRQIQKYKEAKDKSRSWYMAYIMDTNEEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISATREHVQLAKTLGVSKLIVVVNKMDNWSKERYDEIFLPISGLMGKNMPWWPSFFEVLDPPRDPNGPFRMPIIDKGKVESGSIRGDSLVVMPNKEQVKVVAICDAGPGENLRVRFTAGYKAILHIHAVVEECEIIELKSQIDLFVKNGAAVVCRIQSICIEKFSDFPQLGRFTLR
		Caenorhabditis_elegans          STIGGQLMFLTGMVDKRTLEKYREAKEKGRSWYLSWCMDTNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISATREHSMLVKTAGVKHLVILVNKMDKWEEERFKEIYVPCSGLTGAFINWYPCFIEFIDYKRDFNGPVRCTVAEKGKMESGCVQGDTLVVMPNKQPVQVLQIADVVAGDNIKFKIASGYSCVLHIQSAVEEVTVKGVIATIDKFVKQDEKCIMRLEPFVLEPFKEYPYLGRFTLR
		Drosophila_melanogaster         STIGGQIMSLTGMVHKRTLEKYREAREKSRSWYLSWGLDTNQEERDKGKTVGVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISATREHAMLAKTAGVKHLVVLVNKMDNWDQTRYNECFMPCSGLSGTGLPWYPAFIPFIDLNRKSDGPFIMPIVDKGKVESGTARGQNLLVMPNRTQVAVDQLSDVGPGENVKIKICAGYSAVMHIHCAAEEVTVKALICLVDRFVKQDQVAIMRIEMICLEQFKLFPQMGRFTLR
		Homo_sapiens                    STIGGQIMYLTGMVDKRTLEKYREAKEKNRTWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISATREHAMLAKTAGVKHLIVLINKMDNWSNERYEECFMPCSGLTGANLPWYLPFIPYLDFNRSVDGPIRLPIVDKGKLESGSICGQQLVMMPNKHNVEVLGISDVAPGENLKIRICPGYNAVLHIHTCIEEVEITALICLVDRFVKQDQVCIARLRTICLETFKDFPQMGRFTLR
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;