#NEXUS [written Sat Jul 22 14:02:19 JST 2017 by Mesquite version 3.2 (build 801) at Macbook-tao.local/10.27.124.200] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=32; TAXLABELS allele_a_MLG1_N allele_a_MLG1_O allele_a_MLG2_N allele_b_MLG2_O allele_a_MLG3_N allele_a_MLG3_O allele_a_MLG4_N allele_c_MLG4_O allele_a_MLG5_N allele_a_MLG5_O allele_a_MLG6_N allele_b_MLG6_O allele_b_MLG7_N allele_a_MLG7_O allele_a_MLG8_N allele_b_MLG8_O Asplenium_normale_Taiwan_369_N Asplenium_normale_Taiwan_369_O Asplenium_normale_Taiwan_360 Asplenium_normale_Taiwan_373 Asplenium_normale_Taiwan_378 Asplenium_normale_Taiwan_384 allele_1_Asplenium_boreale_018 allele_2_Asplenium_boreale_018 Asplenium_boreale_Taiwan_368 Asplenium_oligophlebium_var_oligophlebium_029 Asplenium_oligophlebium_var_oligophlebium_153 Asplenium_oligophlebium_var_oligophlebium_164 Asplenium_oligophlebium_var_iezimaense_342 allele_1_Asplenium_shimurae_085 allele_2_Asplenium_shimurae_085 Asplenium_trichomanes_066 ; END; BEGIN CHARACTERS; TITLE NIA; DIMENSIONS NCHAR=388; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX allele_a_MLG1_N AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAAAGAGCCTGCATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAACGAGCTGATCAAGTGCGGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTT?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_a_MLG1_O AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACAGGA?????AGTAGAAAATGAGCAATAAGCACAGTTCAATCCTCATGCGGAACGAGCTGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACA??CTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_a_MLG2_N AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAAAGAGCCTGCATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAACGAGCTGATCAAGTGCGGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTT?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_b_MLG2_O AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTAAAAAATGAGCAATAAGCACAGTTCAATCCTCATGCGGAACGAGCAGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_a_MLG3_N AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAAAGAGCCTGCATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAACGAGCTGATCAAGTGCGGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTT?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_a_MLG3_O AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACAGGA?????AGTAGAAAATGAGCAATAAGCACAGTTCAATCCTCATGCGGAACGAGCTGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACA??CTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_a_MLG4_N AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAAAGAGCCTGCATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAACGAGCTGATCAAGTGCGGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTT?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_c_MLG4_O AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACAGGG?????AGTAAAAAATGAGCAATAAGCACAGTTCAATCCTCATGCGGAACGAGCTGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_a_MLG5_N AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAAAGAGCCTGCATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAACGAGCTGATCAAGTGCGGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTT?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_a_MLG5_O AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACAGGA?????AGTAGAAAATGAGCAATAAGCACAGTTCAATCCTCATGCGGAACGAGCTGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACA??CTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_a_MLG6_N AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAAAGAGCCTGCATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAACGAGCTGATCAAGTGCGGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTT?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_b_MLG6_O AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTAAAAAATGAGCAATAAGCACAGTTCAATCCTCATGCGGAACGAGCAGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_b_MLG7_N AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTAGTCGTTCAGGGTGAAAGAGCCTGCATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAACGAGCTGATCAAGTGCGGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTT?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_a_MLG7_O AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACAGGA?????AGTAGAAAATGAGCAATAAGCACAGTTCAATCCTCATGCGGAACGAGCTGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACA??CTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_a_MLG8_N AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAAAGAGCCTGCATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAACGAGCTGATCAAGTGCGGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTT?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_b_MLG8_O AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTAAAAAATGAGCAATAAGCACAGTTCAATCCTCATGCGGAACGAGCAGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG Asplenium_normale_Taiwan_369_N AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAAAGAGCCTGCATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAACGAGCTGATCAAGTGCGGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTT?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG Asplenium_normale_Taiwan_369_O AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACAGGG?????AGTAAAAAATGAGCAATAAGCATAGTTCAATCCTCATGCGGAACGAGCTGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG Asplenium_normale_Taiwan_360 AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAAAGAGCCTGCATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAACGAGCTGATCAAGTGCGGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTT?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG Asplenium_normale_Taiwan_373 AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAAAGAGCCTGCATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAACGAGCTGATCAAGTGCGGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTT?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG Asplenium_normale_Taiwan_378 AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAAAGAGCCTGCATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAACGAGCTGATCAAGTGCGGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTT?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG Asplenium_normale_Taiwan_384 AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAAAGAGCCTGCATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAACGAGCTGATCAAGTGCGGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTT?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_1_Asplenium_boreale_018 AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACAGGG?????AGTAAAAAATGAGCAATAAGCACAGTTCAATCCTCATGCGGAACGAGCTGATCAAGTGCAGAGCTGAGAGTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_2_Asplenium_boreale_018 AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACA?CAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACAGGGCCCGCAGTAAAAAATGAACAATAAGCACAGTTCAATCCTCATGCGGAACGAGCTGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG Asplenium_boreale_Taiwan_368 AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACAGGA?????AGTAAAAAATGAGCAATAAGCACAGTTCAATCCTCATGCGGAACGAGCTGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACA??CTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG Asplenium_oligophlebium_var_oligophlebium_029 AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTAAAAAATGAGCAATAAGCACAGTTCAATCCTCATGCGGAACGAGCAGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG Asplenium_oligophlebium_var_oligophlebium_153 AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTAAAAAATGAGCAATAAGCACAGTTCAATCCTCATGCGGAACGAGCAGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG Asplenium_oligophlebium_var_oligophlebium_164 AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTAAAAAATGAGCAATAAGCACAGTTCAATCCTCATGCGGAACGAGCAGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG Asplenium_oligophlebium_var_iezimaense_342 AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAGAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTGATCTCCACACGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTAAAAAATGAGCAATAAGCACAGTTCAATCCTCATGCGGAACGAGCAGATCAAGTGCAGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTC?AGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_1_Asplenium_shimurae_085 AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATACTTGGTTGGTCGTTCAGGGTGAAAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAACGAGCTGATCAAGTGCGGA???????GTACACATTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTT?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTGCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG allele_2_Asplenium_shimurae_085 AAGCTCCATGACTTCCACATCAAGCTCCCAGAAACACCAGCACCAATATTTTCCATACTTGGTTGGTCGTTCAGGATGAAAGAGCCTACATAACCTCCAAGTCTCACCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCACCTGTACATACGGGG?????AGTTAAAAATGAGCAATAAGCACAGTTCAATCCTCATGTGGAATGAGCTGATCAAGTGCGGA???????GTACACGTTGCAACGC????CTGTTTGCAAGACACACTGCAATGCATGTACTC?TGATGCAAGTTTTACCTGAATACGCGTATCCTTTCAGTTCGTAAGGAACTTGCAAGGTGGTTACAGTGATGGGTATAACTTCATCATGTGCTGG Asplenium_trichomanes_066 AAGCTCCATGACTTCGACATCAAGCTCCCAGAAACACCAGCACCAATATTTGCCATGTTTGGTTGGTCGCTCGGGGTGAGAGAGCCTACATAACCTCCAACTCTCCCCCCCATCAATAGTAACCTCCACTCGGGTAACCTTCCTTCCACCGCCTGTATGTACACG??????AGTTACATACGAGCAATAAGCACAGTTCAGTCCCCACGCGGAATGAGCTAATCAAGTTCAGAT??????TTACACATTGCAACGCCAATCTTTTTGCAAGACACGCCACAATGCATGCACTC?AGATGCAAGTGTTACCTGAATACGCGTATCCTTTCAGAGCGTAGGGAACTTGCAAGGTGGTTACACTAATGGGTATAACTTCATCATGTGCTGG ; END; BEGIN CHARACTERS; TITLE NIA_indels; DIMENSIONS NCHAR=7; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6 7 8 9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z"; MATRIX allele_a_MLG1_N 0011?10 allele_a_MLG1_O 0011?11 allele_a_MLG2_N 0011?10 allele_b_MLG2_O 0011?10 allele_a_MLG3_N 0011?10 allele_a_MLG3_O 0011?11 allele_a_MLG4_N 0011?10 allele_c_MLG4_O 0011?10 allele_a_MLG5_N 0011?10 allele_a_MLG5_O 0011?11 allele_a_MLG6_N 0011?10 allele_b_MLG6_O 0011?10 allele_b_MLG7_N 0011?10 allele_a_MLG7_O 0011?11 allele_a_MLG8_N 0011?10 allele_b_MLG8_O 0011?10 Asplenium_normale_Taiwan_369_N 0011?10 Asplenium_normale_Taiwan_369_O 0011?10 Asplenium_normale_Taiwan_360 0011?10 Asplenium_normale_Taiwan_373 0011?10 Asplenium_normale_Taiwan_378 0011?10 Asplenium_normale_Taiwan_384 0011?10 allele_1_Asplenium_boreale_018 0010010 allele_2_Asplenium_boreale_018 1001?10 Asplenium_boreale_Taiwan_368 0011?11 Asplenium_oligophlebium_var_oligophlebium_029 0011?10 Asplenium_oligophlebium_var_oligophlebium_153 0011?10 Asplenium_oligophlebium_var_oligophlebium_164 0011?10 Asplenium_oligophlebium_var_iezimaense_342 0011?10 allele_1_Asplenium_shimurae_085 0011?10 allele_2_Asplenium_shimurae_085 0011?10 Asplenium_trichomanes_066 01?0100 ; END; BEGIN TREES; Title NIA_ML; ID 015d68aa37e027; LINK Taxa = Taxa; TRANSLATE [0] 1 allele_a_MLG1_N, [1] 2 allele_a_MLG1_O, [2] 3 allele_a_MLG2_N, [3] 4 allele_b_MLG2_O, [4] 5 allele_a_MLG3_N, [5] 6 allele_a_MLG3_O, [6] 7 allele_a_MLG4_N, [7] 8 allele_c_MLG4_O, [8] 9 allele_a_MLG5_N, [9] 10 allele_a_MLG5_O, [10] 11 allele_a_MLG6_N, [11] 12 allele_b_MLG6_O, [12] 13 allele_b_MLG7_N, [13] 14 allele_a_MLG7_O, [14] 15 allele_a_MLG8_N, [15] 16 allele_b_MLG8_O, [16] 17 Asplenium_normale_Taiwan_369_N, [17] 18 Asplenium_normale_Taiwan_369_O, [18] 19 Asplenium_normale_Taiwan_360, [19] 20 Asplenium_normale_Taiwan_373, [20] 21 Asplenium_normale_Taiwan_378, [21] 22 Asplenium_normale_Taiwan_384, [22] 23 allele_1_Asplenium_boreale_018, [23] 24 allele_2_Asplenium_boreale_018, [24] 25 Asplenium_boreale_Taiwan_368, [25] 26 Asplenium_oligophlebium_var_oligophlebium_029, [26] 27 Asplenium_oligophlebium_var_oligophlebium_153, [27] 28 Asplenium_oligophlebium_var_oligophlebium_164, [28] 29 Asplenium_oligophlebium_var_iezimaense_342, [29] 30 allele_1_Asplenium_shimurae_085, [30] 31 allele_2_Asplenium_shimurae_085, [31] 32 Asplenium_trichomanes_066; TREE bestREP1 = (((((1:0.00000001,3:0.00000001,5:0.00000001,7:0.00000001,9:0.00000001,11:0.00000001,13:0.00247252,15:0.00000001,17:0.00000001,19:0.00000001,20:0.00000001,21:0.00000001,22:0.00000001):0.00247229,30:0.00000001):0.00246264,31:0.01260223):0.01024577,((4:0.00000001,12:0.00000001,16:0.00000001,26:0.00000001,27:0.00000001,28:0.00000001,29:0.00000001):0.00268382,(8:0.00000001,18:0.0024754,23:0.00255733,24:0.00748261,(25:0.00000001,(2:0.00000001,6:0.00000001,10:0.00000001,14:0.00000001):0.00248722):0.00498737):0.00235011):0.01068833):0.05173205,32:0.05173205)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN TREES; Title NIA_BI; ID 015d68aa37e928; LINK Taxa = Taxa; TRANSLATE [0] 1 allele_a_MLG1_N, [1] 2 allele_a_MLG1_O, [2] 3 allele_a_MLG2_N, [3] 4 allele_b_MLG2_O, [4] 5 allele_a_MLG3_N, [5] 6 allele_a_MLG3_O, [6] 7 allele_a_MLG4_N, [7] 8 allele_c_MLG4_O, [8] 9 allele_a_MLG5_N, [9] 10 allele_a_MLG5_O, [10] 11 allele_a_MLG6_N, [11] 12 allele_b_MLG6_O, [12] 13 allele_b_MLG7_N, [13] 14 allele_a_MLG7_O, [14] 15 allele_a_MLG8_N, [15] 16 allele_b_MLG8_O, [16] 17 Asplenium_normale_Taiwan_369_N, [17] 18 Asplenium_normale_Taiwan_369_O, [18] 19 Asplenium_normale_Taiwan_360, [19] 20 Asplenium_normale_Taiwan_373, [20] 21 Asplenium_normale_Taiwan_378, [21] 22 Asplenium_normale_Taiwan_384, [22] 23 allele_1_Asplenium_boreale_018, [23] 24 allele_2_Asplenium_boreale_018, [24] 25 Asplenium_boreale_Taiwan_368, [25] 26 Asplenium_oligophlebium_var_oligophlebium_029, [26] 27 Asplenium_oligophlebium_var_oligophlebium_153, [27] 28 Asplenium_oligophlebium_var_oligophlebium_164, [28] 29 Asplenium_oligophlebium_var_iezimaense_342, [29] 30 allele_1_Asplenium_shimurae_085, [30] 31 allele_2_Asplenium_shimurae_085, [31] 32 Asplenium_trichomanes_066; TREE con_50_majrule = (((((1:0.0008939575,3:0.0009075837,5:0.000930103,7:0.000902084,9:0.0008997788,11:0.0009093605,13:0.002155024,15:0.0009306697,17:0.0008952582,19:0.0008852217,20:0.0009107205,21:0.0008825703,22:0.0008669712):0.002214957,30:0.0009579205):0.002184554,31:0.007506409):0.007063971,((4:0.000877578,12:0.0008705134,16:0.0009043465,26:0.0009291458,27:0.0009163228,28:0.0008837804,29:0.0009396186):0.003022911,18:0.002171075,23:0.002184425,24:0.004857825,8:0.0008924954,(25:0.0009621227,(2:0.0009304519,6:0.0009211869,10:0.0008757364,14:0.0009056648):0.00218018):0.003432785):0.00659941):0.024953775,32:0.024953775)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = NIA) = unord: 1 - 388; TYPESET * UNTITLED (CHARACTERS = NIA_indels) = unord: 1 - 7; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = NIA) = universal: 1 - 388; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = NIA) = 'Jukes-Cantor': 1 - 388; ProbModelSet * UNTITLED (CHARACTERS = NIA_indels) = 'Mk1 (est.)': 1 - 7; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1500699744242; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1595171433615650561; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6617866299498273544; mqVersion 320; checksumv 0 3 3409475808 null getNumChars 388 numChars 388 getNumTaxa 32 numTaxa 32 short true bits 15 states 15 sumSquaresStatesOnly 241041.0 sumSquares 241041.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 2 errorReportedDuringRun; mqVersion; setID 1 7581186520204166605; mqVersion 320; checksumv 1 3 3947709503 null getNumChars 7 numChars 7 getNumTaxa 32 numTaxa 32 short true bits 3 states 3 sumSquaresStatesOnly 490.0 sumSquares 490.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 2 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 356; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1356 685; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6617866299498273544 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 324; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -72; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;