#NEXUS [written Sat Jul 22 13:01:21 JST 2017 by Mesquite version 3.2 (build 801) at Macbook-tao.local/fe80:0:0:0:e249:1757:3d68:de4%9] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=32; TAXLABELS allele_a_MLG1_N allele_a_MLG1_O allele_b_MLG2_N allele_b_MLG2_O allele_a_MLG3_N allele_a_MLG3_O allele_a_MLG4_N allele_c_MLG4_O allele_a_MLG5_N allele_d_MLG5_O allele_b_MLG6_N allele_d_MLG6_O allele_a_MLG7_N allele_a_MLG7_O allele_b_MLG8_N allele_e_MLG8_O Asplenium_normale_Taiwan_369_N Asplenium_normale_Taiwan_369_O Asplenium_normale_Taiwan_360 Asplenium_normale_Taiwan_373 Asplenium_normale_Taiwan_378 Asplenium_normale_Taiwan_384 allele_1_Asplenium_boreale_018 allele_2_Asplenium_boreale_018 Asplenium_boreale_Taiwan_368 Asplenium_oligophlebium_var_oligophlebium_029 Asplenium_oligophlebium_var_oligophlebium_153 Asplenium_oligophlebium_var_oligophlebium_164 Asplenium_oligophlebium_var_iezimaense_342 allele_1_Asplenium_shimurae_085 allele_2_Asplenium_shimurae_085 Asplenium_trichomanes_066 ; END; BEGIN CHARACTERS; TITLE PGI; DIMENSIONS NCHAR=411; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX allele_a_MLG1_N TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGCTGATAGTTAAGACGTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAA??GCTCGGATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAAAGGGATCCAGTGTGGAGAATAGAATAAATCTAGGGGATTCTGATTTATGTTTTTCTTGCTTTTTGC allele_a_MLG1_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_b_MLG2_N TACAACAGGCAATTTCTTCTTTTCTAAATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCTCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC allele_b_MLG2_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTCTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATACTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_a_MLG3_N TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGCTGATAGTTAAGACGTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAA??GCTCGGATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAAAGGGATCCAGTGTGGAGAATAGAATAAATCTAGGGGATTCTGATTTATGTTTTTCTTGCTTTTTGC allele_a_MLG3_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_a_MLG4_N TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGCTGATAGTTAAGACGTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAA??GCTCGGATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAAAGGGATCCAGTGTGGAGAATAGAATAAATCTAGGGGATTCTGATTTATGTTTTTCTTGCTTTTTGC allele_c_MLG4_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGGTC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAAAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTAAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_a_MLG5_N TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGCTGATAGTTAAGACGTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAA??GCTCGGATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAAAGGGATCCAGTGTGGAGAATAGAATAAATCTAGGGGATTCTGATTTATGTTTTTCTTGCTTTTTGC allele_d_MLG5_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGATGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_b_MLG6_N TACAACAGGCAATTTCTTCTTTTCTAAATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCTCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC allele_d_MLG6_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGATGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_a_MLG7_N TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGCTGATAGTTAAGACGTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAA??GCTCGGATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAAAGGGATCCAGTGTGGAGAATAGAATAAATCTAGGGGATTCTGATTTATGTTTTTCTTGCTTTTTGC allele_a_MLG7_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_b_MLG8_N TACAACAGGCAATTTCTTCTTTTCTAAATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCTCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC allele_e_MLG8_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCAGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_normale_Taiwan_369_N TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGCTGATAGTTAAGACGTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAA??GCTCGGATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAAAGGGATCCAGTGTGGAGAATAGAATAAATCTAGGGGATTCTGATTTATGTTTTTCTTGCTTTTTGC Asplenium_normale_Taiwan_369_O TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_normale_Taiwan_360 TACAACAGGCAATTTCTTCTTTTCTAAATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCTCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC Asplenium_normale_Taiwan_373 TACAACAGGCAATTTCTTCTTTTCTAAATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCTCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC Asplenium_normale_Taiwan_378 TACAACAGGCAATTTCTTCTTTTCTAAATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCTCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC Asplenium_normale_Taiwan_384 TACAACAGGCAATTTCTTCTTTTCTAAATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCTCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC allele_1_Asplenium_boreale_018 TACAACAGGCAATTTCTTCTATTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGCTTATTTTTAGCGTGAGTGTTCATAAGGTC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCATGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCGTAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACA???????AATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_2_Asplenium_boreale_018 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCGTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_boreale_Taiwan_368 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_oligophlebium_var_oligophlebium_029 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTCTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATACTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_oligophlebium_var_oligophlebium_153 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGATGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_oligophlebium_var_oligophlebium_164 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCAGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC Asplenium_oligophlebium_var_iezimaense_342 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGCGTGAGTGTTCATAAGATC???ACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGTTACCT????????CATCTCCAACCAGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTCTTTATC??CTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGCGGAACATAGAGTTAATCTAGGGGATTCTGCTTTAAGCTTTTCTTGCTTTTTGC allele_1_Asplenium_shimurae_085 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGCTGATAGTTAAGACGTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAA??GCTCGGATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTCCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAAAGGGATCCAGTGTGGAGAATAGAATAAATCTAGGGGATTCTGATTTATGTTTTTCTTGCTTTTTGC allele_2_Asplenium_shimurae_085 TACAACAGGCAATTTCTTCTTTTCTATATGTTTGAGAAGCAAAAGCTGACCATATCATTGAATGCATTTTTATTTTTGGTGATAGTTAAGACCTGCCTGTTTATTTTTAGTGCGAGTGTTCATAAGGTCGTTACCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCACGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTCGAATGCTGAGAAGTTACCTCCCCTCCCCATCTCCAACCGGCCTCCCCTCCTTCCTAGTTCCTGCCTCCACCTCCCTACCCTC?TTATCCTCTCTCTATAATGCATTGTTCATAGTGCACATTTCATAATAAAGAGAGGGATCCAGTGTGGAACATAGAATAAATCTAGGGGATTCTGCTTTATGCTTTTCTTGCTTTTTGC Asplenium_trichomanes_066 TACAACAGGCAATTCCTTATTCTCTATATGTTTGAGAAGCAAAAGCTGACCATATTATTGAATGCACATTTATTTCTGGTGATATTTAAGACCTGCCTGTTTA?TTTTAGCGCGAGTGTTCATAATGTTGTTGCCTGAAGCAAAAACTTGCATTGGTAGGCTCAATTTAGAAGCAAGTTTGCATGGTGTAGAGGTGGAAGGGAAGGGCTTGAATGCTGAGAAGCTACCTCCCCTCCCCCTTTCCAACCGGCCTCTCCTCCTTCCTAGTCCCTGCCTCCACGTCCCTGCCCTG?????????TCTCTATACGACATTGTTCGTAGTGCATATTGCATAATAAAGAGAGGGATCCAGTTTGGAACATAGAATAAGTCTAGGGGATGCTGCTTTATGCTTTTCCTGCTTTTTGC ; END; BEGIN CHARACTERS; TITLE PGI_indels; DIMENSIONS NCHAR=8; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6 7 8 9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z"; MATRIX allele_a_MLG1_N 00101000 allele_a_MLG1_O 01011010 allele_b_MLG2_N 00001000 allele_b_MLG2_O 01010010 allele_a_MLG3_N 00101000 allele_a_MLG3_O 01011010 allele_a_MLG4_N 00101000 allele_c_MLG4_O 01011010 allele_a_MLG5_N 00101000 allele_d_MLG5_O 01010010 allele_b_MLG6_N 00001000 allele_d_MLG6_O 01010010 allele_a_MLG7_N 00101000 allele_a_MLG7_O 01011010 allele_b_MLG8_N 00001000 allele_e_MLG8_O 01010010 Asplenium_normale_Taiwan_369_N 00101000 Asplenium_normale_Taiwan_369_O 01011010 Asplenium_normale_Taiwan_360 00001000 Asplenium_normale_Taiwan_373 00001000 Asplenium_normale_Taiwan_378 00001000 Asplenium_normale_Taiwan_384 00001000 allele_1_Asplenium_boreale_018 01001011 allele_2_Asplenium_boreale_018 01011010 Asplenium_boreale_Taiwan_368 01011010 Asplenium_oligophlebium_var_oligophlebium_029 01010010 Asplenium_oligophlebium_var_oligophlebium_153 01010010 Asplenium_oligophlebium_var_oligophlebium_164 01010010 Asplenium_oligophlebium_var_iezimaense_342 01010010 allele_1_Asplenium_shimurae_085 00101000 allele_2_Asplenium_shimurae_085 00001000 Asplenium_trichomanes_066 1000?1?0 ; taxon_33 ????????; END; BEGIN TREES; Title 'PgiC_ML'; ID 015d684f104f4; LINK Taxa = Taxa; TRANSLATE [0] 1 allele_a_MLG1_N, [1] 2 allele_a_MLG1_O, [2] 3 allele_b_MLG2_N, [3] 4 allele_b_MLG2_O, [4] 5 allele_a_MLG3_N, [5] 6 allele_a_MLG3_O, [6] 7 allele_a_MLG4_N, [7] 8 allele_c_MLG4_O, [8] 9 allele_a_MLG5_N, [9] 10 allele_d_MLG5_O, [10] 11 allele_b_MLG6_N, [11] 12 allele_d_MLG6_O, [12] 13 allele_a_MLG7_N, [13] 14 allele_a_MLG7_O, [14] 15 allele_b_MLG8_N, [15] 16 allele_e_MLG8_O, [16] 17 Asplenium_normale_Taiwan_369_N, [17] 18 Asplenium_normale_Taiwan_369_O, [18] 19 Asplenium_normale_Taiwan_360, [19] 20 Asplenium_normale_Taiwan_373, [20] 21 Asplenium_normale_Taiwan_378, [21] 22 Asplenium_normale_Taiwan_384, [22] 23 allele_1_Asplenium_boreale_018, [23] 24 allele_2_Asplenium_boreale_018, [24] 25 Asplenium_boreale_Taiwan_368, [25] 26 Asplenium_oligophlebium_var_oligophlebium_029, [26] 27 Asplenium_oligophlebium_var_oligophlebium_153, [27] 28 Asplenium_oligophlebium_var_oligophlebium_164, [28] 29 Asplenium_oligophlebium_var_iezimaense_342, [29] 30 allele_1_Asplenium_shimurae_085, [30] 31 allele_2_Asplenium_shimurae_085, [31] 32 Asplenium_trichomanes_066; TREE bestREP6 = ((((1:0.00000001,5:0.00000001,7:0.00000001,9:0.00000001,13:0.00000001,17:0.00000001,30:0.00000001):0.0193692,(3:0.00000001,11:0.00000001,15:0.00000001,19:0.00000001,20:0.00000001,21:0.00000001,22:0.00000001):0.00423454,31:0.00211231):0.00710964,(((((4:0.00000001,26:0.00000001):0.00435381,(10:0.00000001,12:0.00000001,27:0.00000001):0.00217603,(16:0.00000001,28:0.00000001,29:0.00000001):0.00217514):0.00217793,6:0.00000001,14:0.00000001,18:0.00000001,24:0.00218318,25:0.00000001,2:0.00000001):0.00436809,8:0.00217797):0.00266293,23:0.01083526):0.01192334):0.034053785,32:0.034053785)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN TREES; Title 'PgiC_BI'; ID 015d68724f9820; LINK Taxa = Taxa; TRANSLATE [0] 1 allele_a_MLG1_N, [1] 2 allele_a_MLG1_O, [2] 3 allele_b_MLG2_N, [3] 4 allele_b_MLG2_O, [4] 5 allele_a_MLG3_N, [5] 6 allele_a_MLG3_O, [6] 7 allele_a_MLG4_N, [7] 8 allele_c_MLG4_O, [8] 9 allele_a_MLG5_N, [9] 10 allele_d_MLG5_O, [10] 11 allele_b_MLG6_N, [11] 12 allele_d_MLG6_O, [12] 13 allele_a_MLG7_N, [13] 14 allele_a_MLG7_O, [14] 15 allele_b_MLG8_N, [15] 16 allele_e_MLG8_O, [16] 17 Asplenium_normale_Taiwan_369_N, [17] 18 Asplenium_normale_Taiwan_369_O, [18] 19 Asplenium_normale_Taiwan_360, [19] 20 Asplenium_normale_Taiwan_373, [20] 21 Asplenium_normale_Taiwan_378, [21] 22 Asplenium_normale_Taiwan_384, [22] 23 allele_1_Asplenium_boreale_018, [23] 24 allele_2_Asplenium_boreale_018, [24] 25 Asplenium_boreale_Taiwan_368, [25] 26 Asplenium_oligophlebium_var_oligophlebium_029, [26] 27 Asplenium_oligophlebium_var_oligophlebium_153, [27] 28 Asplenium_oligophlebium_var_oligophlebium_164, [28] 29 Asplenium_oligophlebium_var_iezimaense_342, [29] 30 allele_1_Asplenium_shimurae_085, [30] 31 allele_2_Asplenium_shimurae_085, [31] 32 Asplenium_trichomanes_066; TREE con_50_majrule = ((((1:0.0008185531,5:0.0007666615,7:0.0008263206,9:0.0008120995,13:0.0008087663,17:0.0008033211,30:0.0008113263):0.01135985,(3:0.0008395399,11:0.0007983003,15:0.0007959895,19:0.0008045656,20:0.0008036636,21:0.0008103575,22:0.0007833231):0.003060643,31:0.001929157):0.004916562,(((((4:0.0007891235,26:0.0008263323):0.00320357,(10:0.0008335651,12:0.0007979998,27:0.0007914868):0.002008142,(16:0.0008361974,28:0.0008565137,29:0.0008295124):0.001986503):0.00192048,6:0.0008081537,14:0.0008129206,18:0.0008194607,24:0.001945816,25:0.0008269009,2:0.0008430033):0.003179263,8:0.002000725):0.002225971,23:0.006922145):0.007245229):0.018699595,32:0.018699595)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = PGI) = unord: 1 - 411; TYPESET * UNTITLED (CHARACTERS = PGI_indels) = unord: 1 - 8; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = PGI) = universal: 1 - 411; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = PGI) = 'Jukes-Cantor': 1 - 411; ProbModelSet * UNTITLED (CHARACTERS = PGI_indels) = 'Mk1 (est.)': 1 - 8; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1500696086082; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3646738407023221465; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1404707773990209492; mqVersion 320; checksumv 0 3 1582465928 null getNumChars 411 numChars 411 getNumTaxa 32 numTaxa 32 short true bits 15 states 15 sumSquaresStatesOnly 330094.0 sumSquares 330094.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 2 errorReportedDuringRun; mqVersion; setID 1 2941272157655973020; mqVersion 320; checksumv 1 3 2217054186 null getNumChars 8 numChars 8 getNumTaxa 32 numTaxa 32 short true bits 3 states 3 sumSquaresStatesOnly 494.0 sumSquares 494.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 2 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 356; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1272 689; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3646738407023221465 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015d684f104f4; toggleUseWeights off; endTell; setAssignedID 2131.1500695943732.1542340030789599314; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 916 617; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.interchange; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #3646738407023221465 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 015d68724f9820; toggleUseWeights off; endTell; setAssignedID 2161.1500696023143.1404206954764352023; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 916 617; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.interchange; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1404707773990209492 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 916 617; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; showDataWindow #2941272157655973020 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 916 617; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #2941272157655973020 #mesquite.lists.CharacterList.CharacterList; tell It; setData 1; getWindow; tell It; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.parsimony.CharListParsModels.CharListParsModels; getTable; tell It; columnWidth 1 122; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 916 617; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;