NEXUS [File created by TreeBASE: 7/26/07 21:05:44] [Matrix accession#: M1962] BEGIN TAXA; TITLE M1962; DIMENSIONS NTAX=18; TAXLABELS Botryosphaeria_quercuum Massarina_fronsisubmersa Massarina_rubi Lophiostoma_vagabundum Leptosphaeria_contecta Anguillospora_longissima_AY204595 Anguillospora_longissima_AY204592 Anguillospora_longissima_AY204593 Anguillospora_longissima_AY204594 Anguillospora_longissima_AY204596 Sp._cupreorufescens_A1 Sp._cupreorufescens_A89 Sp._cupreorufescens_A20 Ophiosphaerella_korrae Setomelanomma_holmii Phaeosphaeria_nodorum Tumularia_aquatica Strumella_griseola ; END; BEGIN CHARACTERS; TITLE M1962; DIMENSIONS NCHAR=506; FORMAT missing = ? symbols = " ABCDEFGHIKLMNPQRSTUVWXYZ " datatype = DNA gap = - ; MATRIX Botryosphaeria_quercuum CTCTCGCCGCGAGGGGAGGCCCTGAAAAGGGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCT-TCAAACTCCAGTCAGTAAACGTCGACGTCTGATACACAAG---TTAATAAACTAAAACTTTCAACAACGGATCTCTTGGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAAC--CCTCAAGCTCT-------GCTTGGTATTGGGCGC--CGTCCTCTCT-------------GCGGACGCGCCTCAAAGACC-TCGGCGGTG--GCTGTCCAGGCCGCTGCAAGC-GTAGTAGAA--TACACCTCGCTTTGGAGCGGCTGGCGTC--GCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA Massarina_fronsisubmersa CCCGTTTC-CTCG-GCAGCAT-TGC------TTAATTCCACGGCCGTGCCTGTCAGAGGACCCCCCAAAAAACCCTTT---GCAATCTCTACAATT---TTCAGAAACAATTCAATTTTTAAAACTTTCAACAATGGATCTCTTGG-CTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCATTTAAAA--ACTCAAGCGAA-------GCTTGGTGATGGGCGT-CTGTCCCGCACGACGATGGTGCACAAGGACTCGCCTCAAATGCAGTTGGCAGCCCCAATACCTCCTCAAATCGGATCCGAAGTAGAATTCGCAGGCCGTG-----GACGGTGGTGGCTCTCCAAAGTAGAAACTCG-TGAAGCCTCCTC--AATCGGATGCGAAGTAAAATTTGCAGGCCGTGGA Massarina_rubi CCCTTGATTTTCGAGCACCTTCTG-------TTTCTTCGGCGGGCCCGCCCGCCGGTGGACAACC--TCAAACCCTTTATTGCAATAGCAGTACTCTGATAAACAAAA---CAAATAATCAAAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCATTTCAAA--CTTCAAGCCCCCCCTTTAGCTTGGTGTTGGGCGT-CTGTCCTCCCCCC------G------GGACTCGCCTCAAATGCA-TTGGCAGCC--GGCACGTTGGCTTC---GAGC-GCAGCAGAA-ACGCGCGCGGCG-----TCCGACGGTGCCTGGCTCTCCAGGAAGCCT-------CCACCTCAAGTTTGACCTCGGATCAGGTAGGGATACCCGCTGA Lophiostoma_vagabundum CCCTTGCATTTCGAGCACCTTCTG-------TTTCCTCGGCGGGCTCGCCCGCCAATGGGGACCAAACCAAACCCTCC--TGTAGTTGCAGTAAAC--GTCTACAAA----ACAAAAATCAAAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCATCTAAAAACCCTCAAGCACT-------GCTTGGTGTTGGGCGCCTTGTCCCGCCCCC------G-GGCGCGGACTCGCCTCAAAAGCA-TTGGCGGCC--TGTGTATTGGCTTC---GAGC-GCAGCAGAA-ACGCGCCTCGCAG-ACCTCTGGCGCGGGC--GTCCATCAAGACGCAA-------CCA---CAAGTTTGACCTCGGATCAGGTAGGGATACCCGCTGA Leptosphaeria_contecta CCCTTGT-CTACTAGTAC-TACTG-------TTTCCTCGGCAGGCTTGCCTGCCAATGGGGACCCCATCAAACCTTTT--TATA-TTGTTGTAACC--GTAACCAAA----CAAATAATCAAAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAACC-CCCTCAAGCTCT-------GCTTGGTGTTGGGCGT-TTGTCCCGCTTTT------TCGGTATGGACTCGCCTTGAAGATA-TTGGCAGCCA-CCTCCCTTGGCTTC---GAGC-GCAGCACTT-TTGCGCCCGGTA----CTTGGGGGGTTGT--GGTTCTCCAAAAGCCTA------TCATTTC--AGTTGACCTCGGATCAGGTAGGGATACCCGCTGA Anguillospora_longissima_AY204595 CCCTTGT-CTATGAGCAC-TCTTG-------TTTCCTCGGCAGGCTTGCCTGCCAATGGGGACCACACCAAACCTTTT-TTGTAGTAGTAGTAGCC--GTATATAAA-----CAAAAATCAAAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTACCT-ACCTCAAGCTCT-------GCTTGGTGTTGGGCGT-TTGTCCTGCCTTT------TTGGCATGGACTCGCCTCAAATATA-TTGGCAGCC--GTCACCCTGGCTTC---GAGC-GCAGCACAT-TTGCGCCTGA-------TTTCTATGTGGT--GGCTCCCCAGAAGCGTA------TTTTTTT--GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA Anguillospora_longissima_AY204592 CCCTTGT-CTATGAGCAC-TCTTG-------TTTCCTCGGCAGGCTTGCCTGCCAATGAGGACCACATCAAACCTTTT-TTGCAGTAGTAGTAGCC--GTATATAAA-----CAAAAATCAAAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTACCA-TCCTCAAGCTCT-------GCTTGGTGTTGGGCGT-TTGTCCTGCCTTT------TTGGCGTGGACTCGCCTCAAATATA-TTGGCAGCC--GTCACCCTGGCTTC---GAGC-GCAGCACAT-TTGCGCCTGA-------TTTCTATGTGGT--GGCTCCCCAGAAGCGTA------TTTTTTT--GGTTGACCTCGGATCAGGTAGGG----------- Anguillospora_longissima_AY204593 CCCTTGT-CTATGAGCAC-TCTTG-------TTTCCTCGGCAGGCTTGCCTGCCAATGAGGACCACATCAAACCTTTT-TTGCAGTAGTAGTAGCC--GTATATAAA-----CAAAAATCAAAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGGACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTACCT-ACCTCAAGCTCT-------GCTTGGTGTTGGGCGT-TTGTCCTGCCTTT------TTGGCGTGGACTCGCCTCAAATATA-TTGGCAGCC--GTCACCCTGGCTTC---GAGC-GCAGCACAT-TTGCGCCTGA-------TTTCTATGTGGT--GGCTCCCCAGAAGCGTA------TTTTTTT--GGTTGACCTCGGATCAGGTAGGGATACCCGCTGA Anguillospora_longissima_AY204594 CCCTTGT-CTATGAGCAC-TCTTG-------TTTCCTCGGCAGGCTTGCCTGCCAATGAGGACCACATCAAACCTTTT-TTGCAGTAGTAGTAGCC--GTATATAAA-----CAAAAATCAAAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTACCT-ACCTCAAGCTCT-------GCTTGGTGTTGGGCGT-TTGTCCTGCCTTT------TTGGCGTGGACTCGCCTCAAATATA-TTGGCAGCC--GTCACCCTGGCTTC---GAGC-GCAGCACAT-TTGCGCCTGA-------TTTCTATGTGGT--GGCTCCCCAGAAGCGTA------TTTTTTT--GGTTGACCTCGGATCAGGTAGGG----------- Anguillospora_longissima_AY204596 CCCTTGT-CTATGAGCAC-TCTTG-------TTTCCTCGGCAGGCTTGCCTGCCAATGAGGACCACATCAAACCTTTT-TTGCAGTAGTAGTAGCC--GTATATAAA-----CAAAAATCAAAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTACCT-ACCTCAAGCTCT-------GCTTGGTGTTGGGCGT-TTGTCCTGCCTTT------TTGGCGTGGACTCGCCTCAAATATA-TTGGCAGCC--GTCACCCTGGCTTC---GAGC-GCAGCACAT-TTGCGCCTGA-------TTTCTATGTGGT--GGCTCCCCAGAAGCGTA------TTTTTTT--GGTTGACCTCGGATCAGGTAGGG----------- Sp._cupreorufescens_A1 CCCTTGT-CTATGAGCAC--TTTG-------TTTCCTCGGCAGGCTTGCTTGCCAATGAGGACCACAACCAACCTTTTTTTGTAGTAGTAGTAGCC--GTAAACAAA-----CAAAAATCAAAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAACC-CCCTCAAGCTCT-------GCTTGGTGTTGGGCGT-TTGTCCCGCCTTT------GTAGCAAGGACTCGCCTTAAATATA-TTGGCAGCC--GTCACCCTGGCTTC---GAGC-GCAGCACAT-TTGCGC------------------------------------------------------------------------------------------- Sp._cupreorufescens_A89 CCCTTGT-CTATGAGCAC--TTTG-------TTTCCTCGGCAGGCTTGCTTGCCAATGAGGACCACAACCAACCTTTTT--GTAGTAGTAGTAGCC--GTAAACAAA-----CAAAAATCAAAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAACC-CCCTCAAGCTCT-------GCTTGGTGTTGGGCGT-TTGTCCCGCCTTT------GTAGCAAGGACTCGCCTTAAATATA-TTGGCAGCC--GTCACCCTGGCTTC---GAGC-GCAGCACAT-TTGCGCCTGA-------TTTCTG-GTGGC--GGCTTCCCAGAAGCCCA------TTTTTTC--GATTGACCTCGGATCAGGTAGGGATACCCGCTGA Sp._cupreorufescens_A20 CCCTTGT-CTATGAGCAC--TTTG-------TTTCCTCGGCAGGCTTGCTTGCCAATGAGGACCACAACCAACCTTTTTT-GTAGTAGTAGTAGCC--GTAAACAAA-----CAAAAATCAAAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTTAACC-CCCTCAAGCTCT-------GCTTGGTGTTGGGCGT-TTGTCCCGCCTTT------GTAGCAAGGACTCGCCTTAAATATA-TTGGCAGCC--GTCACCCTGGCTTC---GAGC-GCAGCACAT-TTGCGCCTGA-------TTTCTG-GTGGC--GGCTTCCCAGAAGCCCA------TTTTTTC--GATTGACCTCGGATCAGGTAGGGATACCC----- Ophiosphaerella_korrae CCCTTGTTTATTGAGTACC-TATG-------TTTCCGTGGTGGGCTTGCCTGCCAAAAGGACACCCCATTGAACCTAT--TT-ATTTTTAATCAGC--GTCTGAATAA-CAATAATAATTACAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTAC--CTTCAAGCTAT-------GCTTGGTGTTGGGTGT-TTGTCCACTCCAC------TGCGTCTGGACTCGCCTTAAAGCAA-TTGGCAGCC--TATATCT-GGTTTT---AAGC-GCAGCACATTTTGCGTCTTA-----CTGCTAGTTATGTG--GGCACCCATTAAGCCTC------TTT-ATCACGTTTGACCTCGGATCAGGTAGGGATACCCGCTGA Setomelanomma_holmii CCCTTGTCTTTTGCGCACT-CATG-------TTTCCTCGGCAGGCTTGCCTGCCGGTTGGACAAAAATTATAACCTTT--TTCATTTTCAATTAGC--GTCTGAAATAATTTTAATAATTACAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTAC--CTTCAAGCTCT-------GCTTGGTGTTGGGTGT-TTGTCCTTTCCCT-------GCGATTGGACTCGCCTTAAAGTCA-TTGGCAGCC--AGTGTTTTGGTTTTG--AAGC-GCAGCACAAGTCGCGATTCA-----AG-CCGGTAGCACC--AGCTTCCATCAAGCCTT------TTTTATCACTTTTGACCTCGGATCAGGTAGGGATACCC----- Phaeosphaeria_nodorum CCCTTGTCTTTTGCGGTACCCACG-------TTTCCTCGGCAGGCTTGCCTGCCGGTTGGACAAAT-TTATAACCTTT--TTAATTTTCAATCAGC--GTCTGAAAAA--CTTAATAATTACAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTAC--CCTCAAGCTCT-------GCTTGGTGTTGGGTGT-TTGTCCTCTCCCT------AGTGTTTGGACTCGCCTTAAAATAA-TTGGCAGCC--AGTGTTTTGGTATTG--AAGC-GCAGCACAAGTCGCGATTCG----TA--ACA--AACACT--TGCGTCCA-CAAGCCTT------TTTAA---CTTTTGACCTCGGATCAGGTAGGGATACCCGCTGA Tumularia_aquatica CCCTTTGTTTATGAGTAC--CCTG-------TTTCCTCGGCGGGCTTGCC-GTCGCTAGGACCCCTATAAA-CCCTTT---GTAGTAGCAGT-ATC--TTCAGTAAAA--AATAAATATTAAAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCGTTGGGCATGCCTGTTCGAGCGTCATTTAAAC--CTTCAAGCTCT-------GCTTGGTGTTGGGTGT-TTGTTCTGCCT--------AGTGCGTGGACTCGCCT-AAATTCA-TTGGCAGCC--GGTATGTTGGCTTC---GTGC-GCAGCACAA-TTGCGTCGCG-------ATC-AGCCCGCC---CCTT-CATCAAGC---------TCTTTTT-ACTTTGAC-TCGGATCAGGTAGGGATACC-GCTGA Strumella_griseola CCCTTTGTTTATGAGTAC--CCTG-------TTTCCTCGGTGGGCTTGCCCGCCGTTAGGACCCCTATAAAACCTTTT---GTAGTAGCAGT-ATC--TTCAGTAAAAACAAAAAATATTAAAACTTTCAACAACGGATCTCTTGG-TTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCGTTGGGCATGCCTGTTCGAGCGTCATTTAAAC--CTTCAAGCTCT-------GCTTGGTGTTGGGTGT-TTGTTCCGCCTC-------AGTGTGTGGACTCGCCTTAAATTCA-TTGGCAGCC--GGTATGTTGGCTTC---GTGC-GCAGCACA--TTGTGTCACG-------ATCTAGCCTACC--TCCTTCCATTAAGCCTC------TTTTTTT-ACTTTGACCTCGGATCAGGTAGGGA---------- ; END; BEGIN ASSUMPTIONS; options gapmode = missing ; usertype GTR stepmatrix = 4 acgt - 2 1 2 2 - 2 1 1 2 - 2 2 1 2 - ; END;