#NEXUS
[written Wed Apr 09 23:00:25 ICT 2014 by Mesquite  version 2.75 (build 566) at simba.p-2612hnu-f1f/192.168.1.45]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=10;
	TAXLABELS
		Escherichia_coli Shigella_sonnei Shigella_flexneri Shigella_boydii Shigella_dysenteriae Klebsiella_pneumoniae Salmonella_typhimurium Salmonella_enterica Photorhabdus_luminescens Sodalis_glossinidius 
	;

END;


BEGIN CHARACTERS;
	TITLE  ecoli_data_Matrix;
	DIMENSIONS  NCHAR=930;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Escherichia_coli          ATGGTTAAAGTTTATGCCCCGGCTTCCAGTGCCAATATGAGCGTCGGGTTTGATGTGCTCGGGGCGGCGGTGACACCTGTTGATGGTGCATTGCTCGGAGATGTAGTCACGGTTGAGGCGGCAGAGACATTCAGTCTCAACAACCTCGGACGCTTTGCCGATAAGCTGCCGTCAGAACCACGGGAAAATATCGTTTATCAGTGCTGGGAGCGTTTTTGCCAGGAACTGGGTAAGCAAATTCCAGTGGCGATGACCCTGGAAAAGAATATGCCGATCGGTTCGGGCTTAGGCTCCAGTGCCTGTTCGGTGGTCGCGGCGCTGATGGCGATGAATGAACACTGCGGCAAGCCGCTTAATGACACTCGTTTGCTGGCTTTGATGGGCGAGCTGGAAGGCCGTATCTCCGGCAGCATTCATTACGACAACGTGGCACCGTGTTTTCTCGGTGGTATGCAGTTGATGATCGAAGAAAACGACATCATCAGCCAGCAAGTGCCAGGGTTTGATGAGTGGCTGTGGGTGCTGGCGTATCCGGGGATTAAAGTCTCGACGGCAGAAGCCAGGGCTATTTTACCGGCGCAGTATCGCCGCCAGGATTGCATTGCGCACGGGCGACATCTGGCAGGCTTCATTCACGCCTGCTATTCCCGTCAGCCTGAGCTTGCCGCGAAGCTGATGAAAGATGTTATCGCTGAACCCTACCGTGAACGGTTACTGCCAGGCTTCCGGCAGGCGCGGCAGGCGGTCGCGGAAATCGGCGCGGTAGCGAGCGGTATCTCCGGCTCCGGCCCGACCTTGTTCGCTCTGTGTGACAAGCCGGAAACCGCCCAGCGCGTTGCCGACTGGTTGGGTAAGAACTACCTGCAAAATCAGGAAGGTTTTGTTCATATTTGCCGGCTGGATACGGCGGGCGCACGAGTACTGGAAAAC
	Shigella_sonnei           ATGGTTAAAGTTTATGCCCCGGCTTCCAGTGCCAATATGAGCGTCGGGTTTGATGTGCTCGGGGCGGCGGTGACACCCGTTGATGGTGCATTGCTCGGAGATGTAGTCACGGTTGAGGCGGCAGAGACATTCAGTCTCAACAACCTCGGACGCTTTGCCGATAAGCTGCCGTCAGAACCACGGGAAAATATCGTTTATCAGTGCTGGGAGCGTTTTTGCCTGGAGCTGGGCAAGCAAATTCCAGTGGCGATGACTCTGGAAAAGAATATGCCGATCGGCTCGGGCTTAGGCTCCAGCGCCTGTTCGGTGGTCGCGGCGCTGATGGCGATGAATGAACACTGCGGCAAGCCACTTAATGACACCCGTTTGCTGGCTTTGATGGGCGAGCTGGAAGGACGTATCTCCGGCAGCATTCATTACGACAACGTGGCACCGTGTTTTCTTGGTGGTATGCAGTTGATGATCGAAGAAAACGACATCATCAGCCAGCAAGTGCCAGGGTTTGATGAGTGGCTGTGGGTGCTGGCGTATCCGGGAATTAAAGTCTCGACGGCAGAAGCCCGGGCTATTTTACCGGCGCAGTATCGCCGCCAGGATTGCATTGCGCACGGGCGACATCTGGCTGGCTTCATTCACGCCTGCTATTCCCGTCAGCCTGAGCTTGCCGCGAAGCTGATGAAAGATGTTATCGCTGAACCCTACCGTGAACGGTTACTGCCTGGCTTCCGGCAGGCGCGGCAGGCGGTCGCGGAAATCGGCGCGGTAGCGAGCGGTATCTCCGGCTCCGGCCCGACCTTGTTCGCTCTATGTGACAAGCCGGATACCGCCCAGCGCGTTGCCGACTGGTTGGGTAAGAACTACCTGCAAAATCAGGAAGGTTTTGTTCATATTTGCCGGCTGGATACGGCGGGCGCACGAGTACTGGAAAAC
	Shigella_flexneri         ATGGTTAAAGTTTATGCCCCGGCTTCCAGTGCCAATATGAGCGTCGGGTTTGATGTGCTCGGGGCGGCGGTGGCACCCGTTGATGGTGCATTGCTCGGAGATGTAGTCACGGTTGAGGCGGCAGAGACATTCAGTCTCAACAACCTCGGACGCTTTGCCGATAAGCTGCCGTCAGAACCACGGGAAAATATCGTTTATCAGTGCTGGGAGCGTTTTTGCCAGGAGCTTGGCAAGCAAATTCCAGTGGCGATGACTCTGGAAAAGAATATGCCGATCGGTTCGGGCTTAGGCTCCAGCGCCTGTTCGGTGGTCGCGGCGCTGATGGCGATGAATGAACACTGCGGCAAGCCGCTTAATGACACTCGTTTGCTGGCTTTGATGGGCGAGCTGGAAGGACGTATCTCCGGCAGCATTCATTACGACAACGTGGCACCGTGTTTTCTTGGTGGTATGCAGTTGATGATCGAAGAAAACGACATCATCAGCCAGCAAGTGCCAGGGTTTGATGAGTGGCTGTGGGTGCTGGCGTATCCGGGAATTAAAGTCTCGACGGCAGAAGCCCGGGCTATTTTACCGGCGCAGTATCGCCGCCAGGATTGCATTGCGCACGGGCGACATCTGGCTGGCTTCATTCACGCCTGCTATTCCCGTCAGCCTGAGCTTGCCGCGAAGCTGATGAAAGATGTTATCGCTGAACCCTACCGTGAACGGTTACTGCCTGGCTTCCGGCAGGCGCGGCAGGCGGTCGCGGAAATCGGCGCGGTAGCGAGCGGTATCTCCGGCTCCGGCCCGACCTTGTTCGCTCTATGTGACAAGCCGGATACCGCCCAGCGCGTTGCCGACTGGTTGGGTAAGAACTACCTGCAAAATCAGGAAGGTTTTGTTCATATTTGCCGGCTGGATACGGCGGGCGCACGAGTACTGGAAAAC
	Shigella_boydii           ATGGTTAAAGTTTATGCCCCGGCTTCCAGTGCCAATATGAGCGTCGGGTTTGATGTGCTCGGGGCGGCGGTGACACCTGTTGATGGTGCATTGCTCGGAGATGTAGTCACGGTTGAGGCGGCAGAGACATTCAGTCTCAACAACCTCGGACGCTTTGCCGATAAGCTGCCGTCAGAACCACGGGAAAATATCGTTTATCAGTGCTGGGAGCGTTTTTGCCAGGAGCTTGGCAAGCAAATTCCAGTGGCGATGACTCTGGAAAAGAATATGCCAATCGGTTCGGGCTTAGGCTCCAGCGCCTGTTCGGTGGTCGCGGCGCTGATGGCGATGAATGAACACTGTGGCAAGCCGCTTAATGACACTCGTTTGCTGGCTTTGATGGGCGAGCTGGAAGGACGAATCTCCGGCAGCATTCATTACGACAACGTGGCACCGTGTTTTCTTGGTGGTATGCAGTTGATGATCGAAGAAAACGACATCATCAGCCAGCAAGTGCCAGGGTTTGATGAGTGGCTGTGGGTGCTGGCGTATCCGGGGATTAAAGTCTCAACGGCAGAAGCCAGGGCTATTTTACCGGCGCAGTATCGCCGCCAGGATTGCATTGCGCACGGGCGACATCTGGCTGGCTTCATTCACGCCTGCTATTCCCGTCAGCCTGAGCTTGCCGCGAAGCTGATGAAAGATGTTATCGCTGAACCCTACCGTGAACGGTTACTGCCTGGCTTCCGGCAGGCGCGGCAGGCGGTTGCGGAAATCGGCGCGGTAGCGAGCGGTATCTCCGGCTCCGGCCCGACCTTGTTCGCTCTGTGTGACAAGCCGGATACCGCCCAGCGCGTTGCCGACTGGTTGGGTAAGAACTACCTGCAAAATCAGGAAGGTTTTGTTCATATTTGCCGGCTGGATACGGCGGGCGCACGAGTACTGGAAAAC
	Shigella_dysenteriae      ATGGTTAAAGTTTATGCCCCGGCTTCCAGTGCCAATATGAGCGTCGGGTTTGATGTGCTCGGGGCGGCGGTGACACCCGTTGATGGTGCATTGCTCGGAGATGTAGTAACGGTTGAGGCGGCAGAGACATTCAGTCTCAACAACCTCGGACGCTTTGCCGATAAGCTGCCGTCAGAACCACGGGAAAATATCGTTTATCAGTGCTGGGAGCGTTTTTGCCAGGAGCTGGGCAAGCAAATTCCAGTGGCGATGACTCTGGAAAAGAATATGCCGATCGGTTCGGGCTTAGGCTCCAGCGCCTGTTCGGTGGTCGCGGCGCTGATGGCGATGAATGAACACTGCGGCAAGCCGCTTAATGACACCCGTTTGCTGGCTTTGATGGGCGAGCTGGAAGGGCGTATCTCCGGCAGCATTCATTACGACAACGTGGCACCGTGTTTTCTTGGTGGTATGCAGTTGATGATCGAAGAAAACGACATCATCAGCCAGCAAGTGCCAGGGTTTGATGAGTGGCTGTGGGTACTGGCGTATCCGGGGATTAAAGTCTCGACGGCAGAAGCCCGGGCTATTTTACCGGCGCAGTATCGCCGCCAGGATTGCATTGCGCACGGGCGACATCTGGCAGGCTTCATTCACGCCTGCTATTCCCGTCAGCCTGAGCTTGCCGCGAAGCTGATGAAAGATGTTATCGCAGAACCCTACCGTGAACGGTTACTGCCTGGCTTCCGGCAGGCGCGGCAGGCGGTCGCGGAAATCGGCGCGGTAGCGAGCGGTATCTCCGGATCCGGCCCGACCTTGTTCGCTCTGTGTGACAAGCCGGATACCGCCCAGCGCGTTGCCGACTGGTTGGGTAAGAACTACCTGCAAAATCAGGAAGGTTTTGTTCATATTTGCCGGCTGGATACGGCGGGCGCACGAGTACTGGAAAAC
	Klebsiella_pneumoniae     ATGGTCAAAGTATATGCCCCGGCTTCCAGTGCCAATATGAGCGTCGGGTTTGATGTGTTGGGCGCGGCGGTCACGCCGGTGGATGGCACGCTGCTGGGCGATAACGTCACTGTTGAAGCGGCGGAGCAATTCAGTCTGCACAATCTGGGACGCTTCGCCAGCAAACTGCCGACGGCGCCTCAGGAAAACATTGTTTATCAGTGCTGGGAAAGCTTTTGCCAGGAGATCGGTAAGACGGTACCGGTGACGATGACCCTGGAAAAAAACATGCCGATCGGCTCCGGGCTCGGCTCCAGCGCCTGCTCGGTGGTCGCCGCGCTGGTGGCCATGAACGAGTTCTGCGGTAAGCCGCTCAACGAGACGCGGATGCTGGCGCTGATGGGGGAGATGGAAGGGCGTATCTCCGGCAGCATTCACTACGATAACGTGGCGCCGTGCTATCTTGGCGGCATGCAGTTGATGATCGAAGAGAACGGGATTATCAGCCAGCAGGTGCCGGGGTTTGATGAGTGGCTGTGGGTGTTGGCCTATCCGGGGATTAAAGTATCCACCGCCGAAGCGCGGGCGATTCTGCCGGCACAATACCGCCGCCAGGATTGTATCGCCCATGGTCGCCACCTCGCGGGCTTTATTCATGCCTGCTACACCCGCCAGCCGCAGCTGGCGGCAAAATTGATGAAAGATGTCATTGCCGAACCGTACCGTACCAAACTGTTGCCGGGCTTTAGCGAAGCGCGCCAGGCGACAATGGAGATCGGTGCGCAGGCTTGCGGCATCTCCGGCTCTGGCCCGACGCTGTTTGCGTTGTGTGATAAACCGGACACCGCACAGCGCGTCGCCGACTGGCTTGGCGCGCACTATCTGCAGAATCAGGAAGGCTTTGTTCATATTTGCCGGCTGGACACGGCGGGCGCACGCGTAGTGGGA---
	Salmonella_typhimurium    ATGGTGAAAGTGTATGCCCCGGCTTCCAGCGCGAACATGAGCGTCGGTTTCGACGTGTTGGGCGCAGCCGTCACACCCGTTGACGGCACGTTGCTGGGCGATGTGGTATCCGTTGAAGCAGCGGACCATTTCCGTCTGCATAACCTGGGGCGATTTGCCGATAAACTGCCGCCGGAGCCGCGTGAAAATATTGTTTATCAGTGCTGGGAACGTTTTTGCCAGGCATTGGGGAAAACCATCCCGGTGGCGATGACGCTGGAAAAAAATATGCCGATTGGTTCCGGGTTAGGGTCCAGCGCCTGTTCCGTCGTCGCCGCGCTGGTCGCGATGAATGAGCACTGCGGCAAACCGTTAAACGACACGCGTCTGTTGGCGCTGATGGGCGAGCTGGAAGGCCGTATCTCCGGCAGCATCCATTACGATAACGTCGCGCCGTGCTTTCTTGGCGGTATGCAGTTGATGATTGAAGAAAACGGCATTATTAGTCAGCAGGTGCCGGGCTTTGATGAGTGGCTATGGGTACTGGCTTATCCGGGCATTAAAGTTTCTACCGCAGAAGCACGGGCCATTTTGCCTGCGCAGTATCGCCGTCAGGATTGCATTGCGCATGGACGGCATCTGGCCGGTTTTATTCACGCCTGTTACTCGCGGCAGCCGCAGCTTGCCGCCGCGCTGATGAAAGATGTTATTGCCGAACCATACCGCGCGCGTTTACTGCCGGGCTTTAGCCAGGCGCGGCAGGCGGTGTCGGAGATCGGCGCGCTGGCGAGCGGGATTTCCGGGTCGGGGCCGACGCTGTTTGCGCTATGCGATAAACCGGAGACGGCGCAGCGCGTCGCGGACTGGCTGAGCAAACATTATCTGCAAAATCAGGAAGGCTTCGTTCATATTTGCCGGCTGGATACGGCGGGCGCACGAGTAGTGGGA---
	Salmonella_enterica       ATGGTGAAAGTGTATGCCCCGGCTTCCAGCGCGAACATGAGCGTCGGTTTCGACGTGTTGGGCGCGGCCGTCACACCCGTTGACGGCACGTTGCTGGGCGATGTGGTATCCGTTGAAGCAGCGGATCATTTCCGTCTGCATAACCTGGGGCGATTTGCCGATAAACTGCCGCCGGAGCCGCGTGAAAATATTGTTTATCAGTGCTGGGAACGTTTTTGCCAGGCATTGGGGAAAACCATCCCGGTGGCGATGACGCTGGAAAAAAATATGCCGATTGGTTCCGGGTTAGGGTCCAGCGCCTGTTCCGTCGTCGCCGCGCTGGTCGCGATGAATGAGCACTGCGGCAAACCGTTAAACGACACGCGTCTGTTGGCGCTGATGGGCGAGCTGGAAGGCCGTATCTCCGGCAGCATCCATTACGATAACGTCGCGCCGTGCTTTCTTGGCGGTATGCAGTTGATGATTGAAGAAAACGGCATTATTAGTCAGCAGGTGCCGGGCTTTGATGAGTGGCTATGGGTACTGGCTTATCCGGGCATTAAAGTTTCCACCGCAGAAGCACGGGCCATTTTGCCTGCGCAGTATCGCCGTCAGGATTGCATTGCGCATGGACGGCATCTGGCCGGTTTTATTCACGCCTGTTACTCGCGGCAGCCGCAGCTTGCCGCCGCGCTGATGAAAGATGTTATTGCCGAACCATACCGCGCGCGTTTACTGCCGGGCTTTAGCCAGGCGCGGCAGGCGGTGTCGGAGATCGGCGCGCTGGCGAGCGGGATTTCCGGATCGGGGCCGACGCTGTTTGCGCTATGCGATAAACCGGAGACGGCGCAGCGCGTCGCGGACTGGCTGAGCAAACATTATCTGCAAAATCAGGAAGGCTTCGTTCATATTTGTCGGCTGGATACGGCGGGCGCACGAGTAGTGGGA---
	Photorhabdus_luminescens  GTGATTAAAGTCTATGCGCCTGCATCTATTGGTAATGTCAGTGTTGGGTTTGATGTACTGGGAGCGGCGGTCTCTCCAGTTAATGGTGCTTTATTAGGTGACTGCGTTACTGTTCGGGCAGCGAAGAGTTTCAGTTTGCGTAATGAAGGGCAGTTTGTGGGGAAGTTACCTGAGAAGCTGGAGCACAACATTGTTTATCAATGCTGGCAATTATTCTGCCAGCATTTGGGCAAACAATTACCAGTGGAAATGACGCTGGAAAAAAATATGCCAATTGGTTCTGGCCTTGGCTCCAGCGCTTGTTCTGTTGTTGCAGGTTTGATGGCACTGAACGAGTTTGCAGGTCTCCCATTTAATGAAAGCCAATTACTGGCAATGATGGGGGAACTGGAAGGACGTATTTCCGGCAGTATTCACTATGATAATGTCGCTCCATGCTATCTCGGCGGTTTGCAACTGATTATGGAACAAGGAGATATTATCTGTCAGCCAGTACCTTCGTTTGATGAGTGGTTATGGGTGATGGCCTATCCGGGCATCAAAGTTTCTACCGCAGAAGCCAGAGCAATTTTACCTGTAAAATATTCGAAGCAGGATGTTATCGATCATGGACGTTTTCTTGCCGGGTTTATTCATGCCTGTCATACACGGCAACCGGCGCTGGCCGCCAGATTGATGAAAGATGTGGTTGCTGAACCGTATCGTACCCAACTGTTACCGGGTTTTGCCAATGCGCGTGAAACAGCAAAACGGGTAGGGGCATTGGCGTGTGGTATTTCTGGTTCTGGCCCGACATTGTTTTCCATTTGTAATGATATAGCGACCGCAGAGGAAATAGCTGAGTGGCTGCAACAGCATTATGTTCAGAATGATGAAGGTTTTGTACACATTTGCCGTCTGGATCTCGCAGGCGCACGACAAATAGGG---
	Sodalis_glossinidius      ATGGTTAAAGTGTATGCGCCGGCCTCAATCGGCAACGTCAGCGTGGGATTCGACGTGCTGGGCGCGGCGGTGTCGCCTGTGGACGGGACGCTACTGGGGGATTGCGTCAGCGTATCCCGCGCCGACAGCTTTAGCCTGCAAAGCGCCGGGCGCTTTGTCGACAAACTACCGGCAGAGCCGGAGCAGAATATCGTTTATCAATGCTGGCAGCGTTTTTGCGAGGCGGTGGGGGAAACGGTGCCGGTCGCCATGCTACTGGAAAAAAATATGCCCATTGGCTCCGGTCTGGGCTCCAGCGCCTGTTCGGTGGTGGTGGCGCTGGTAGCGATGAATGCCCATTGCGGCCGCCCGCTAAACGATGATCAGATGCTGATGCTGATGGGGGAAATGGAGGGGCGCATTTCCGGCGGGGTGCATTTCGATAATGTCGCACCCTGTTTTCTCGGCGGCATGCAGTTGATGCTTGAGGAAAACGGCATCATCAGCCAGACGGTGCCGGGGTTTGACGACTGGCTGTGGGTGATGGCCTATCCGGGCATCAAAGTGAGCACCGCCGAGGCGCGGGCGATTCTGCCGGCACAATATCGTCGCCAGGACTGCATCAGCCATGGCCGTTATCTGGCGTGCTTTGTGCACGCCTGCCATACCCGTCAGCCGGCGCTTGCGGCTAAACTGATGAAAGATGTTATCGCCGAGCCCTATCGCACCCGACTGCTGCCGGGCTTCGCCGATGCGCGCCAGGCGGTGGGCGATATCGGCGCGCTGGCCTGTGGTATCTCGGGTTCGGGACCAACGCTATTCGCTATCTGCGATCGCCAGGACACCGCGTCGCGCGTCGCCGACTGGCTGACGCAGCACTACCTGCAAAACGACGAAGGTTTTGTTCATATTTGCCGCCTGGATACCTCCGGTGCCCGTTTGATGATGGAT

;



END;

BEGIN TREES;
	Title ecoli_phylogeny;
	LINK Taxa = Taxa;
	TRANSLATE
		1 Escherichia_coli,
		2 Shigella_sonnei,
		3 Shigella_flexneri,
		4 Shigella_boydii,
		5 Shigella_dysenteriae,
		6 Klebsiella_pneumoniae,
		7 Salmonella_typhimurium,
		8 Salmonella_enterica,
		9 Photorhabdus_luminescens,
		10 Sodalis_glossinidius;
	TREE tree_1 = ((9:0.22568960386950532,10:0.21100366205314128)inode7:0.05928235366626855,(6:0.057103565823820784,((7:0.0018005434743594971,8:0.003459470389241214)inode8:0.03966386799217513,((3:0.0029760641264691403,4:0.00255645533056974)inode4:4.836136012716891E-4,(5:0.005124552643163289,(1:0.0027949902252268387,2:0.0025091432118545696)root:5.774414897711427E-4)inode2:5.13315282593634E-4)inode3:0.03924531644843273)inode5:0.03145361970197193)inode6:0.05928235366626855)[% ] [% ] [%  setBetweenBits = selected ];

END;


BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  930;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  930;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Jukes-Cantor':  1 -  930;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1397059225984;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 5334861120622261076;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 3087090643450920017;
			mqVersion 275;
			checksumv 0 3 2014410284 null  getNumChars 930 numChars 930 getNumTaxa 10 numTaxa 10   short true   bits 15   states 15   sumSquaresStatesOnly 195612.0 sumSquares 195612.0 longCompressibleToShort false usingShortMatrix true   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState true false 100;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 992 575;
			setLocation 8 22;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			setActive;
			desuppress;
		endTell;
		endTell;
end;