NEXUS [File created by TreeBASE: 7/26/07 21:15:45] [Matrix accession#: M3003] BEGIN TAXA; TITLE M3003; DIMENSIONS NTAX=11; TAXLABELS Pleurotopsis_longinqua Pistillaria_sp._DJM1031 Mycena_aurantiidisca Mycena_adonis Hemimycena_ignobilis Hemimycena_delicatella Chaetotyphula_sp._BDCR0419_2C Chaetotyphula_hyalina Calyptella_capula Bioluminescent_mycenoid Actiniceps_laevis ; END; BEGIN CHARACTERS; TITLE M3003; DIMENSIONS NCHAR=863; FORMAT DATATYPE = DNA MISSING = N GAP = - ; MATRIX Pleurotopsis_longinqua AACTGCGAGTGAAGAGGGAAAAGCTCAAATTTAAAATCTGGCGGTTCTT-GCAGCCGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGCTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGGGCTT-TGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGGCTGGGGATCAACCTTGCTTTTTTGCTTGGCGTACTTCTCAGTTGATGGGTCAGCATCAGTTTTGACCGCTGGATAAAGATTGAGGGAATGTGGCATCCTCGGATGTGTTATAGCCCTTGGTTGTATACAGCGGTTGGGACTGAGGAACTCAGCACGCCGCAAGGCCGGGTCTTTG-ACCACGTA-CGTGCTTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAAGTTGAGATCTCTGTCGTGGAGAGCATTGACGCCCAGACCAGACCTTTTGTGACGGACCTGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA Pistillaria_sp._DJM1031 AACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGG--CTC----GTCGTCCGAGTTGTAATTTAGAGAAGTGTTACCCGCGTTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAAGGCTT-TGTGGTGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGGCTGGG-ATCAACCTGGTTT----ACCTGGTGTACTTCCTAGTCAATGGGTCAACATCAGTTTTGA-GGCTGGAAAAAGATTGGAGGAATGTGGCATCTTCGGATGTGTTATAGCCTT-AGTTGTATACAGCATTTGGGACTGAGGAACTCAGCAC------------------------------CGTGCTTAGGATG--GGCATAATGGCTTTAATCGACCGGTCTTGAAACACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Mycena_aurantiidisca AACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGGTTCTT-GCAGCCGTCCGAGTTGTAATTTAGAGAAGTGCTATCCGCGTTGGACCGTATACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGATACGGACTGCCAAGGCTT-TGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTAAAAGGGAAACGCTTGAAGTCAGTCGCGTTGGCTGGGGATCAACCTTGCCTTTT-GCTTGGTGTACTTCCTAGTCGATGGGTCAACATCAGTTTTGATTGCTGGATAAAGTTCAGGGGAATGTGGCATCTTTAGATGTGTTATAGCCCTTGTTCGTATACAGTGGTTGGGATTGAGGAACTCAGCACGCCGCAAGGCCGGGTTTTTA-ACCACGTA-CGTGCTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAAGTTGAGATCTCTGTCATGGAGAGCATCGACGCCCAGACTTGAGCTTTTGTGACGGTCCTGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA Mycena_adonis AACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGGTTCTT-GCAGCCGTCCGAGTTGTAATTTAGAGAAGTGCTATCCGCGCTGGACCGTATACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGATACGGACTGCCAGGGCTT-TGTGATGTGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTAAAAGGGAAACGCTTGAAGTCAGTCGCGTTGGCTGGGGATCATCCTTGCTTTTTTGCTTGGTGTACTTCCTAGTTGATGGGTCAACATCAGTTTTGACTGTTGGATAAAGTTCAGAGGAATGTGGCATCTTTAGATGTGTTATAGCCTTTGTTCGTATACAGCAGTTGGGATTGAGGAACTCAGCACGCCGCAAGGCCGGGTATTTATACCACGTA-CGTGCTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAAGTTGAGATCTCTGTCATGGAGAGCATCGACGCCCAGACTTGAGCTTTTGCGACGGTCCTGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA Hemimycena_ignobilis AACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGG-CTTT----GTCGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGCTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGCCACGGACTACCAGGGCTT-TGTGATGCACTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGGCTGGGAATCAACCTTACTTT---GTTTGGTGTACTTCCTAGTTAATGGGTCAACATCAGTTTTGAGTGTTGGATAAAGATTGAGGGAATGTGGCATCCTCGGATGTGTTATAGCCTTTAGTTGTATACAACACTTGGGACTGAGGAACTCAGCACGCCGCAAGGCCGGGTCTTTG-ACCACGTA-CGTGCTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGAAAACCCGAGTGCGTAATGAAAGTGAAAGTTGAGATCTCTGTCGCGGAGAGCATCGACGCCCGGTCCAGATCTTCTGTGACGGTACCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA Hemimycena_delicatella AACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCCGTCTTT---GATTGCCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGCTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGGGCTT-TGTGATATGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTAAAAGGGAAACGCTTGAAGTCAGTCGCATTTACTTGAAATCAACCTTGCTTTTT-GCTTGGTGTACTTTCTTGTCGATGGGTCAACATCAGTTTTGACTGCTGGATAAAGATTAAGGGAATGTGGCATCCTCGGATGTGTTATAGCCTTTAGTTGTATACAGTAATTGGGACTGAGGAACTCAGCACGCCGAAAGGCCGGGTACTTGTACCACGTT-CGTGCTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGTAAACCCATATGCGCAATGAAAGTGAAAGTTGAGATCTCTGTCGTGGAGAGCATCGACGCCCGGGTCAGACCTTTTGTGACGATTCCGCGGTTGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA Chaetotyphula_sp._BDCR0419_2C AACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGG-CTTC----GTCGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGCTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGCCACGGACTACCAGGGCTT-TGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGGCTGGGAATCAACCTGGTTT----ACCTGGTGTACTTCCTAGTCAATGGGTCAACATCAGTTTTGAGTGCTGGATAAAGATTAGAGGAATGTGGCATCTTCGGATGTGTTATAGCCTTTAGTTGTATACAGCATTTGGGACTGAGGAACTCAGCACGCCGCAAGGCCGGGTTTTT--ACCACGTA-CGTGCTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGAAAACCCGAGTGCGTAATGAAAGTGAAAGTTGAGATCTCTGTCGTGGAGAGCATCGACGCCCGGCTCAGAACTTTTGGGACGATGCCGCGGTTGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA Chaetotyphula_hyalina A-CTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGG-CTTT----GTCGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGTTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAAGGCTT-TGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGGCTGGAAATCAACCTTGTTT----ACTTGGTGTACTTTCTAGTCAATGGGTCAACATCAGTTTTGAGTGTTGGATAAAGATTAGAGGAATGTGGCATCTTCGGATGTGTTATAGCCTTTAGTTGTATACAGCATTTGGGACTGAGGAACTCAGCACGCCGCAAGGCCGGG-ATTTA-TCCACGTA-CGTGCTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGAAAACCCGAGTGCGCAATGAAAGTGAAAGTTACGATCTCTGTCGTGGAGAGCATTGACGCCCGGCGCAGAACTTTTGGGACGCTGCCGCGGTTGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA Calyptella_capula AACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCAG-TTTC----ACTGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGTGCTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGTGCTT-TGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCACGTTGGCTGGGAATCAACCTTGCTTT---GCTTGGTGTACTTTCTAGTTAATGGGTCAGCATCAGTTTTGAGTGTTGGAAAAAGATTAGGGGAATGTGGCATCTTCGGATGTGTTATAGCCCTTGGTTGTATACA-CACTTGGGACTGAGGAACTCAGCACGCCGCAAGGCTGG-TCTTCG-GACACATA-CGTGCTTAGGATGCTG-CAAAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCAAGTATTTGGGTGGAAAACTCGAATGCGAAATGAAAGTGAAAGTTGAGATCCCTGTCGCGGGGAGCATCGACGCCCGGCTCTGAGCTTTTGTGACGATGCTGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA Bioluminescent_mycenoid AACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGGTCCTT-GCGGTCGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGCTGGACCGTATACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGATACGGACTACCAGGGCTTTTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGGCTGGGGATCAACCTTGCTCTTTTGCTTGGCGTACTTCCCAGTTGATGGGTCAGCATCAGTTTTGACTGTTGGATAAAGGTCAAGGGAATGTGGCATCTTCGGATGTGTTATAGCCTTTGGTCGTATACAGCGGTTGGGACTGAGGAACTCAGCACGCCGCAAGGCCGGGTACTTGTACCACGTAACGTGCTTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAAGTTGAGATCTCTGTCGTGGAGAGCATCGACGCCCGGACCTGAACTTCTGTGACGGCCCTGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA Actiniceps_laevis AACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGT-CTTC----GGCGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGCTGGACCGTGTACAAGTCTCCTGGAATGGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGGGCTT-TGTGATGCACTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGGCTGGAAATCAACCTGGTTT----ACCTGGTGTACTTTCTAGTCAATGGGTCAACATCAGTTTTGAGTGCTGGATAAAGATTAGAGGAATGTGGCATCTTCGGGTGTGTTATAGCCTTTAGTTGTATACAGCATTTGGGACTGAGGAACTCAGCACGCCGCAAGGCCGGGTTTTT--ACCACGTA-CGTGCTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGAAAACCCGAGTGCGCAATGAAAGTGAAAGTTGAGATCTCTGTCGTGGAGAGCATCGACGCCCGGCTCAGAACTTTTGGGACGATGCCGCGGTTGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1 - 863 ; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; END;