NEXUS
[File created by TreeBASE:  7/26/07  21:15:46]
[Matrix accession#: M3006]

BEGIN TAXA;
	TITLE M3006;
	DIMENSIONS  NTAX=11;
	TAXLABELS
		Typhula_phacorrhiza_DAOM195241	Typhula_phacorrhiza_AY586724	Typhula_phacorrhiza_AF393079	Pleurocybella_porrigens	Phyllotopsis_nidulans	Macrotyphula_juncea_DJM_975	Macrotyphula_juncea_DJM_1032	Macrotyphula_fistulosa	Macrotyphula_defibulata	Henningsomyces_candidus	Bulbillomyces_farinosus
	;
END;

BEGIN CHARACTERS;
	TITLE M3006;
	DIMENSIONS NCHAR=870;
	FORMAT DATATYPE = DNA MISSING = N GAP = - ;
	MATRIX
		Typhula_phacorrhiza_DAOM195241       GAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGGTCCTTGTGGCCGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGTTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTCGTAGAGGGTGAGAATCCCGTATATGACACGGACTACCAAGGCTTTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTAAAAAGGAAACGCTTGAAGTCAGTCGCGTTAACCGGGGATCAACTTGGC-TTTCTAGCTGAGAGCACTTTCCGGTTGACGGGTCAACATCAATTTTGACTGTTGGATAAAGGTCAGTGGAATGTGGCATCTTCGGGTGTGTTATAGCCATTGGTTCGCATACAACGGTTGGGATTGAGGAACTCAGCACGCCGCAAGGCCGGA--GATTC--GTCTCAC-GTA--CGTGCTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAAGTTGAGATCCCTGTCGTGGGGAGCATCGACGCCCGGACCAGACCTTTTGTGACGGATCCGCGGTAGAGCGTGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAAAGACTAATCG
		Typhula_phacorrhiza_AY586724         GAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGGTCCTTGTGGCCGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGTTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTCGTAGAGGGTGAGAATCCCGTATATGACACGGACTACCAAGGCTTTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAAGGAAACGCTTGAAGTCAGTCGCGTTGGCCGGGGATCAACTTGGC-TTTTTAGCTGAGAGCACTTTCCGGTCGACGGGTCAACATCAATTTTGATTGTTGGATAAAGGTCAGTGGAATGTGGCATCTTCGGGTGTGTTATAGCCATTGGTTCGCATACAACGGTTGGGATTGAGGAACTCAGTACGCCGCAAGGCCGGA--TAGCA--ATATCAC-GTA--CGTACTTAGGATGTTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAAGTTGAGATCCCTGTCGTGGGGAGCATCGACGCCCGGACCAGACCTTTTGTGACGGATCCGCGGTAGAGCGTGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAAAGACTAATCG
		Typhula_phacorrhiza_AF393079         GAAGCGGGAAAAGCTCAAATTTAAAATCTGATGGTCCTTGCGGCTGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGCTGGACCGTGTATAAGTCTCCTGGAACGGAGCGTCGTAGAGGGTGAGAATCCCGTATATGACACGGACTACCAGGGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGATTGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAAGGAAACGCTTGAAGTCAGTCGCGTTGGCCAGGGATCAACTTAGC--TTCT-GCTGAGAGCACTTTCTGGTTAACGGGTCAGCATCAATTTTGATCGTTGGATAAAGGTCAGTGGAATGTGGCATCTTCGGATGTGTTATAGCCATTGGTTCGTATACAACGGTTGGGATTGAGGAACTCAGCACGCCGCAAGGCCGGG--TATTC--GTACCAC-GTA--CGTGCTTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGCGAGTGTTTGGGTGATAAACCCGAGCGCGTAATGAAAGTGAAAGTTGAGACCTCTGTCGTGGAGGGCATCGACGCCCGGACCAGACCTTTTGTGACGGATCCGCGGTAGAGCGTGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAAAGACTAATCG
		Pleurocybella_porrigens              GAAGCGGGAAAAGCTCAAATTTAAAATCTGGCAATCCTCGTGGTTGTCCGAGTTGTAATTTAGAGAAGTGCTATCTGCGTTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTCGTAGAGGGTGAGAATCCCGTATATGACACGGACTACCAAGGCTTTGTGATACGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGTCCAGGAATCAACCTTGCATTTTTTGCTGGGAGCACTTTCTGGTTGACGGGTCAGCATCAATTTTGATTGTTGGATAAAGGTTAAGGGAATGTGGCATCCTCGGATGTGTTATAGCCCTTGATTCGCATACAACAGTTGGGATTGAGGAACTCAGCACGCCGCAAGGCCGGG--TACTT--GTACCAC-GTAA-CGTGCTTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAAGTTGAGACCTCTGTCATGGAGGGCATCGACGCCCGGACCAGACCTTTTGTGACGGTCCCGCGGTAGAGCGTGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAAAGACTAATCG
		Phyllotopsis_nidulans                GAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGGTCTCT--GATCGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGCTGGACCGTGTACAAGTCTCCTGGAACGGAGCGTCATAGAGGGTGAGAATCCCGTATATGGCACGGACTACCAGGGCTTTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATAGGCGAGAAACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGGCCAAGGATCAACCTAGC-TTTTTTGCTGGGAGCACTTCTTGGTTGACGGGTCAGCATCAGTTTTGATTGTTGGATAAAGTTCAAGGGAATGTGGCATCTTCGGATGTGTTATAGCCTTTG-TTCGTATACAACAGTTGGGACTGAGGAACTCAGCATGCCGCAAGGCCGAG--TACTTTTGTACTAANGTAAACATGCTTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTATAACATGCCCGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAAGTTGAGATCTCTGTCGTGGAGAGCATCGACGCCCGGACCAGACCTTTTGTGACGGTTCCGCGGTAGAGCGTGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAAAGACTAATCG
		Macrotyphula_juncea_DJM_975          GAAGCGGGAAAAGCTCAAATTTAAAATCTGATAGTCC-----GCTGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGCTGGACCGTGTATAAGTCTCCTGGAACGGAGCGTCGTAGAGGGTGAGAATCCCGTATATGACACGGACTACCAGGGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAAGGAAACGCTTGAAGTCAGTCGCGTTGGCCGGGGATCAACTTAG---TTTT-GCTGAGAGCACTTTCCGGTTAACGGGTCAGCATCAATTTTGATTGTTGGATAA-GGTCAGTGGAATGTGGCATCTTCGGATGTGTTATAGCCATTG-TTCGCATACAACAGTTGGGATTGAGGAACTCAGCAC------------------------------------CGTGCTTAGGATGCTGGCATAATGGCTTTAATCGACCGGTCTTGAAACACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
		Macrotyphula_juncea_DJM_1032         GAAGCGGGAAAAGCTCAAATTTAAAATCTGATAGTCCTTGCGGCTGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGCTGGACCGTGTATAAGTCTCCTGGAACGGAGCGTCGTAGAGGGTGAGAATCCCGTATATGACACGGACTACCAGGGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAAGGAAACGCTTGAAGTCAGTCGCGTTGGCCGGGGATCAACTTAGC--TTTT-GCTGAGAGCACTTTCCGGTTAACGGGTCAGCATCAATTTTGATTGTTGGATAAAGGTCAGTGGAATGTGGCATCTTCGGATGTGTTATAGCCATTGGTTCGCATACAACAGTTGGGATTGAGGAACTCAGCACGCCGCAAGGCCGGG--TATTT--ATACCAC-GTA--CGTGCTTAGGATGCTGGCATAATGGCTTTAATCGACCGGTCTTGAAACACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
		Macrotyphula_fistulosa               GA-GCGGGAAAAGCTCAAATTTAAAATCTGGCGGTTCTTGTAGCCGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGCTGGACCGTGTATAAGTCTCCTGGAACGGAGCGTCGTAGAGGGTGAGAATCCCGTATATGACACGGACTACCAGGGCTTTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAAGGAAACGCTTGAAGTCAGTCGCGTTAGCCAGGGATCAACTTAGC--TTTT-GCTGAGAGCACTTTCTGGTTGACGGGTCAGCATCAATTTTGATTGTTGGATAAAGGTCAGTGGAATGTGGCATCCTCGGATGTGTTATAGCCATTGGTTCGTATACAACAGTTGGGATTGAGGAACTCAGCACGCCGCAAGGCCGGG--TATTC--GTACCAC-GTA--CGTGCTTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGCGAGTGTTTGGGTGTAAAACCCGAGCGCGTAATGAAAGTGAAAGTTGAGACCTCTGTCGTGGAGGGCATCGACGCCCGGACCAGACCTTTTGTGACGGATCCGCGGTAGAGCGTGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAAAGACTAATCG
		Macrotyphula_defibulata              GAAGCGGGAAAAGCTCAAATTTAAAATCTGATAGTCCTTGTGGCTGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGCTGGACCGTGTATAAGTCTCCTGGAACGGAGCGTCGTAGAGGGTGAGAATCCCGTATATGACACGGACTACCAGGGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGATTGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAAGGAAACGCTTGAAGTCAGTCGCGTTGGCCGGGGATCAACTTAGC--TTTT-GCTGAGAGTACTTTCCGGTTAACGGGTCAGCATCAATTTTGATTGTTGGATAAAGGTCAGTGGAATGTGGCATCTTCGGATGTGTTATAGCCATTGGTTCGTATACAACAGTTGGGATTGAGGAACTCAGCACGCCGCAAGGCCGGG--TATTT--ATACCAC-GTA--CGTGCTTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGCGAGTGTTTGGGTGATAAACCCGAGCGCATAATGAAAGTGAAAGTTGAGACCTCTGTCGTGGAGGGCATCGACGCCCGGACCAGACCTTTTGTGACGGATCCGCGGTAGAGCGTGTATGTTGGGACCCGAAAGANGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCNGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAAAGACTAATCG
		Henningsomyces_candidus              GAAGCGGGAAGAGCTCAAATTTAAAATCTGGCAGTCCTTGTGATTGTCCGAGTTGTAATTTAGAGAAGTGCTATCCGCGCTGGACCGTGTACAAGTCTGCTGGAACGCAGCGTCGTAGAGGGTGAGAATCCCGTATWTGACACGGACTACCAGGGCTTTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCGTCTAGAAATCAACCTTGC--TTTT-GCTGGGAGCACTTTCTAGTTGACGGGTCAGCATCAGTTTTGATTGTTGGATAAAGGTTGGAGGAATGTGGCATCTCCGGATGTGTTATAGCCTCTGATTCACATACGACAGTTGGGACTGAGGAACTCAGCACGCCGCAAGGCCGGG--TTTTT--A-ACCAC-GTAA-CGTGCTTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGAAAACTCGAATGCGTAATGAAAGTGATAGTTGAGATCTCTGTCGTGGAGAGCATCGACGCCCGGACCAGACCTTCTGTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAAAGACTAATCG
		Bulbillomyces_farinosus              GAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGGTYCTTGTAGCCGTCCGAGTTGTAATTTAGAGAAGTGTTATCCGCGCTGGACCGTGTATAAGTCTCCTGGAACGGAGCGTCGTAGAGGGTGAGAATCCCGTATATGACACGGACTACCAGGGCTTTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAAGGAAACGCTTGAAGTCAGTCGCGTTAGCCAGGGATCAACTTAGC--TTTT-GCTGAGAGCACTTTCTGGTTGACGGGTCAGCATCAATTTTGATTGTTGGATAAAGGTCAGTGGAATGTGGCATCCTCGGATGTGTTATAGCCATTGGTTCGTATACAACAGTTGGGATTGAGGAACTCAGCACGCCGCAAGGCCGGG--TATTC--GTACCAC-GTA--CGTGCTTAGGATGCTGGCATAATGGCTTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCCGCGAGTGTTTGGGTGTAAAACCCGAGCGCGTAATGAAAGTGAAAGTTCAGACCTCTGTCGTGGAGGGCATTGACGCCCGGACCAGACCTTTTGTGACGGATCCGCGGTAGAGCGTGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAAAGACTAATCG
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 870 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;