NEXUS
[File created by TreeBASE:  7/26/07  21:05:40]
[Matrix accession#: M1950]

BEGIN TAXA;
	TITLE M1950;
	DIMENSIONS  NTAX=25;
	TAXLABELS
		Cercophora_areolata	Cercophora_sulphurella	Cercophora_sparsa	Lasiosphaeria_glabrata_SMH4617	Lasiosphaeria_glabrata_TL4529	Lasiosphaeria_rugulosa_SMH4438	Lasiosphaeria_rugulosa_SMH1518	Lasiosphaeria_sorbina_CBS885.85	Lasiosphaeria_sorbina_GJS_L555	Lasiosphaeria_lanuginosa_SMH3277	Lasiosphaeria_lanuginosa_TL5656	Lasiosphaeria_lanuginosa_SMH2390	Lasiosphaeria_lanuginosa_AR2148	Lasiosphaeria_lanuginosa_SMH4027	Lasiosphaeria_lanuginosa_SMH3819	Lasiosphaeria_lanuginosa_SMH4594	Lasiosphaeria_ovina_SMH1538	Lasiosphaeria_ovina_SMH3923	Lasiosphaeria_ovina_SMH4124	Lasiosphaeria_ovina_SMH3286	Lasiosphaeria_ovina_SMH2635	Lasiosphaeria_ovina_SMH2670	Lasiosphaeria_ovina_CBS958.72	Lasiosphaeria_ovina_SMH4605	Lasiosphaeria_ovina_K_Robinson_sn
	;
END;

BEGIN CHARACTERS;
	TITLE M1950;
	DIMENSIONS NCHAR=634;
	FORMAT RespectCase SYMBOLS = " A C G T 0 1 2 3 4 5 6 7 8 9 B D " MISSING = N GAP = :  ;
	MATRIX
		Cercophora_areolata                     NNAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTAAAGAGTTGCAAAACTCCCTTACACCATCGCGAACGCTACCCCGCATCGTTGCTTCGGCGGTCGGGCGGCCCCCCGGGGCCGCCTCTCCGGCCCCCCAC::::GGGGCGCCCGCCGGAGGAGCACAACCAAACCATTGCAACTATTGGCCTCTCTGAGTATGATTTT:::AAA:T:AAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAAGCCCT::::GCTTGCGTTGGGGTCCTGCG:GCT::GCC:CGCAGGCCCT:GAAAACCAGTGGCGGGCTCGCTAGTCACACCGAGCGCAGTAATAC::ATCTCGCTTTGGG:CGTGCGGCGGG:::TT:CTTGCCGTTAAAC:ACCCCCTTTTTACCAAGGTTGACCTCGGATCAAGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA22D067633146
		Cercophora_sulphurella                  GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCCT:AAACCATCGCGAACG:TACCTTTACC:GTTGCTTCGGCGGGGGG::::::CTCCAGGGCGGAGCCGCAG::CCCTCAC:::::GGGCGCCCGCCGGCAGCAC:TAAACAAACTCTTTATATCCCAGGCCTCTCTGAGTA:T::TTATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAAGCCCC::GGGCTTGTGTTGGGGCCCTGCG:GTT::GCC::GCAGGCCCTT:AAAAACAGTGGCGGGCTCGCT:GTCACACCGAGCGTAGTAATAC::ATCTCGCTTTGG:ACGTGCGGCGTG:::TTTCTTGCCGTTAAAC:ACCCCCCC:TTCTCAAGGTTGACCTCGAATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA149175943051
		Cercophora_sparsa                       NNNNNNNNAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCCT:AAACCATCGCGAACG:TACCTTTACC:GTTGCTTCGGCGG:::::::::::::::::::::::::::AG::CCCTCAC:::::GGGCGCCCGCCGGCAGCGC:TA::CAAACTCTTT:TATTACAGGCCTCTCTGAGTA:T::TTATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAAGCCCCA::GGCTTGCGTTGGGGTCCTGCG:GCT::GCC::GCAGGCCCT:GAAAAACAGTGGCGGGCTCGCT:GTCACACCGAGCGTAGTAATAC::ATCTCGCTTTGG:ACGTGCGGCGGG:::TT:CTTGCCGTTAAAC:A:CCCCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA145B70733042
		Lasiosphaeria_glabrata_SMH4617          NNNNNNNNAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCCT:AAACCATCGCGAACG:TACCTGTACC:GTTGCTTCGGCGGGCGG::::::CTCCAGGGCGGAGCCGCAA::CCCTCGC::::GGGGTGCCCGCCGGTGGC:CCAA::T:AACTCT:G:TATTCTTATTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAAGCCCCC:GGGCCTGTGTTGGGGCTCTGCGCGCTA:GTCGCGCAGGCTCTT:AAAAATAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAATCT:TATCTCGCTTCGG:ACGCGTGGCTTGCGCTT::::GCCGTTAAAC:A::CCCCCTTTCTTAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA138623555035
		Lasiosphaeria_glabrata_TL4529           GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCCT:AAACCATCGCGAACG:TACCTGTACC:GTTGCTTCGGCGGGCGG::::::CTCCAGGGCGGAGCCGCAA::CCCTCGC::::GGGGTGCCCGCCGGTGGC:CCAA::T:AACTCT:G:TATTCTTATTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAAGCCCCC:GGGCCTGTGTTGGGGCTCTGCGCGCTA:GTCGCGCAGGCTCTT:AAAAATAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAATCT:TATCTCGCTTCGG:ACGCGTGGCTTGCGCTT::::GCCGTTAAAC:A::CCCCCTTTCTTAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA138623555035
		Lasiosphaeria_rugulosa_SMH4438          NNNNNNNAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCGAGACTCCC::AAACCATCGCGAAC:CTACCCATACCCGTTGCTTCGGCGGGCGG::::::CCCCTATCGGGCGCCGCAG::CCCC:CTCGCGGGGGCGCCCGCCGGCAGC:CCC:::TAAACCCT:GAAT:CGCGGGCATCTCTGAGTA:A:GAC::ACAAA:C:GAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCCCGGGCCCGTGTTGGGGCGCTGCGCGCTG:GCCGCGCAGGCCCTC:AAAATTAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAGTGTATATCTCGCTT:GGGTCGCGGAGCGGGCGCC::::GGCCGTAAAAC:A:CCTC:AC::CTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA006712806308
		Lasiosphaeria_rugulosa_SMH1518          NNNNGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATAACAGAGTTGCAAGACTCC:T:AAACCATCGCGAAC:CTACCCGTACCCGTTGCTTCGGCGGGCGG::::::CCCCTCTCGGGCGCCGCAG::CTCCCCTCGCGGGGGCGCCCGCCGGCAGC:CCC:::TAGACTCT:GAAT:CACTGGTATCTCTGAGTA:A:AAAATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCC:TCTGGGCCCGTGTTGGGGCTCTGTGCGCTA:GCTGTGCAGGCCCTC:AAAACTAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAATATAAATCTCGCTCAGG:TCGCGTGGCGGGCGCT::::AGCCGTAAAAC:A:CC:CTACTCCACAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA317808404427
		Lasiosphaeria_sorbina_CBS885.85         NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCAAGACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGCGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA:::GAACTCT:GAATTTC:TGGCATCTCTGAGTGTGTGGCATGCAAAATGAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCAGTCGGGCCCCG:GCGCCCGTGTTGGGGCACTGCGCGCCAAGCCGCGCAGGCCCTCTGAAACCAGTGGCGGGCTCGCC:GTCGCACCGAGCGCAGTAACGCA::TCTCGCTCAGGG:CGCGCGGCGGGCGCTT::::GCCGTAAAACGACCCTCTCCTCCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATNNNNNNNNNN05048402213D
		Lasiosphaeria_sorbina_GJS_L555          NNNNNTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAGACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGGGGGG::::::CTCCGGGGAGGAGCCGCGG::CCCTGAC:::::GGGTGCCCGCCGCAAGC:CCGA::C:AACTCT:GAATTTC:TGGCATCTCTGAGTA:T:AGCATGCAAA:T:GAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCCACCA:TCAGGCCCCA:GGGCCCGTGTTGGGGCGCTGCGCGCCA:GCCGCGCAGGCCCTC:GAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTGAACGA:ATCTCGCTCAGGGGCGCGCGGGGGGCGCCT::::GCCGTAAAAC:ACCCCCCCCTTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA05B951117210
		Lasiosphaeria_lanuginosa_SMH3277        NNNNNNNNAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGCGG::CCCTAAC::::GGGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAATTTC:TGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCA:GGGCCCGTGTTGGGGCACTACGCGCCA:GTCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAATACA::TCTCGCTTTGG:ACGCGCGGCGGGCGCTT::::GCCGTAAAAC:ACCCCCCCCTTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA051321203030
		Lasiosphaeria_lanuginosa_TL5656         GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGCGG::CCCTAAC:::::GGGTGCTCGCCGCTAGC:CCAA::T:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AATATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACACA::TCTCGCTTCGG:ACGCGCGGCGGGCGCTT::::GCCGTAAAAC:A:CCCCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA050533100032
		Lasiosphaeria_lanuginosa_SMH2390        GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGCGG::CCCTGAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTTGG:ACGCGCGGCGGGCGCTT::::GCCGTAAAAC:A:CCCCCCTTTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA052223101034
		Lasiosphaeria_lanuginosa_AR2148         NNNNNNNAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCTGGAGAGGAGCCGCGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:TCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AGCATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCGCTGCGCGCCA:GCCGCGTAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAATACA::TCTCGCTTTGG:ACGCGTGGCGGGCGCTT::::GCCGTAAAAC:A:CCCCCC:TTCTTAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA054D43103033
		Lasiosphaeria_lanuginosa_SMH4027        NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCTGGAGAGGAGCCGCGG::CCCTAAC:::::GGGTGCTCGTCGCAAGC:TCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AGCATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCGCTGCGCGCCA:GCCGCGTAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAATACA::TCTCGCTTTGG:ACGCGTGGCGGGCGCTT::::GCCGTAAAAC:A:CCCCCC:TTCTTAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCANNNNNNNNNNNNNNNNN054D43103033
		Lasiosphaeria_lanuginosa_SMH3819        NNNNNTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGCGG::CCCTAAC:::::GGGCGCTCGCCGTAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCTC:GGGCCCGTGTTGGGGCGCTGCGCGCTA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTTGG:ACGCGCGGCGGGCGCTT::::GCCGTAAAAC:A:CCCCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA050226301032
		Lasiosphaeria_lanuginosa_SMH4594        NNNNNNNNAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGCGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACACA::TCTCGCTTAGG:ACGCGCGGCGGGCGCCT::::GCCGTAAAAC:A:CCCCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA050223100012
		Lasiosphaeria_ovina_SMH1538             NNNNNTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTAGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA053223101039
		Lasiosphaeria_ovina_SMH3923             GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTAGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAANNNNNNNNNNNNNNNNNNNN053223101039
		Lasiosphaeria_ovina_SMH4124             GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTAGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA053223101039
		Lasiosphaeria_ovina_SMH3286             GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTAGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA053223101039
		Lasiosphaeria_ovina_SMH2635             NNNNNTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTAGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA053223101039
		Lasiosphaeria_ovina_SMH2670             NNNNNNNAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTAGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA053223101039
		Lasiosphaeria_ovina_CBS958.72           NNNNNTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTGGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTTAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA05322310103B
		Lasiosphaeria_ovina_SMH4605             NNNNNNNNAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTGGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTTAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA05322310103B
		Lasiosphaeria_ovina_K_Robinson_sn       NNNNNNNNAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC::AAACCATCGCGAAC:TTACC:GTACC:GTTGCTTCGGCGAGGGG::::::CTCCGGGGAGGAGCCGTGG::CCCTAAC:::::GGGTGCTCGCCGCAAGC:CCAA::C:AACTCT:GAAT:TCTTGGTATCTCTGAGTA:T:AACATACAAA:T:AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCA:TCAGGCCCCC:GGGCCCGTGTTGGGGCACTGCGCGCCA:GCCGCGCAGGCCCTC:AAAACCAGTGGCGGGCTCGCT:GTCGCACCGAGCGTAGTAACATA::TCTCGCTTAGG:ACGCGTGGCGGGCGCTT::::GCCGTAAAAC:A:C:TCCC:TTCTTAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA05322310103B
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 622 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 
 EXSET * ambregs = 1 - 22 70 - 75 88 - 102 113 - 160 173 - 201 212 - 231 406 - 414 435 - 445 450 - 459 494 - 507 512 - 516 526 - 536 545 - 561 603 - 622 CONSTANT ; 
 
 
 
 USERTYPE Tn_Tv STEPMATRIX = 5 
 A C G T: 
 . 2.08 1.71 2.33 4.28 
 2.08 . 2.48 0.98 4.28 
 1.71 2.48 . 2.33 inf 
 2.33 0.98 2.33 . 4.28 
 4.28 4.28 inf 4.28 . 
 ; 
 
 
 
 USERTYPE Region#1 STEPMATRIX = 4 
 
 
 
 
 
 0 1 2 3 
 . 1.00 1.00 1.00 
 1.00 . 1.00 1.00 
 1.00 1.00 . 1.00 
 1.00 1.00 1.00 . 
 ; 
 
 
 USERTYPE Region#2 STEPMATRIX = 6 
 
 
 
 
 
 
 
 0 1 2 3 4 5 
 . 1.00 6.00 4.00 4.00 5.00 
 1.00 . 6.00 3.00 4.00 5.00 
 6.00 6.00 . 6.00 7.00 6.00 
 4.00 3.00 6.00 . 1.00 2.00 
 4.00 4.00 7.00 1.00 . 3.00 
 5.00 5.00 6.00 2.00 3.00 . 
 ; 
 
 
 USERTYPE Region#3 STEPMATRIX = 12 
 
 
 
 
 
 
 
 
 
 
 
 
 
 0 1 2 3 4 5 6 7 8 9 B D 
 . 1.00 1.00 1.00 2.00 4.00 14.00 16.00 9.00 5.00 2.00 20.00 
 1.00 . 2.00 2.00 3.00 7.00 14.00 16.00 8.00 6.00 3.00 20.00 
 1.00 2.00 . 2.00 3.00 4.00 14.00 16.00 9.00 5.00 1.00 21.00 
 1.00 2.00 2.00 . 3.00 4.00 15.00 17.00 10.00 6.00 3.00 20.00 
 2.00 3.00 3.00 3.00 . 4.00 15.00 17.00 11.00 7.00 4.00 20.00 
 4.00 7.00 4.00 4.00 4.00 . 7.00 7.00 7.00 1.00 3.00 7.00 
 14.00 14.00 14.00 15.00 15.00 7.00 . 2.00 11.00 11.00 13.00 21.00 
 16.00 16.00 16.00 17.00 17.00 7.00 2.00 . 13.00 13.00 15.00 14.00 
 9.00 8.00 9.00 10.00 11.00 7.00 11.00 13.00 . 4.00 8.00 19.00 
 5.00 6.00 5.00 6.00 7.00 1.00 11.00 13.00 4.00 . 4.00 20.00 
 2.00 3.00 1.00 3.00 4.00 3.00 13.00 15.00 8.00 4.00 . 20.00 
 20.00 20.00 21.00 20.00 20.00 7.00 21.00 14.00 19.00 20.00 20.00 . 
 ; 
 
 
 USERTYPE Region#4 STEPMATRIX = 12 
 
 
 
 
 
 
 
 
 
 
 
 
 
 0 1 2 3 4 5 6 7 8 9 B D 
 . 15.00 11.00 12.00 12.00 11.00 14.00 13.00 13.00 13.00 14.00 11.00 
 15.00 . 11.00 11.00 11.00 11.00 12.00 11.00 11.00 11.00 9.00 11.00 
 11.00 11.00 . 2.00 3.00 1.00 4.00 8.00 7.00 3.00 11.00 1.00 
 12.00 11.00 2.00 . 1.00 3.00 6.00 7.00 6.00 1.00 10.00 3.00 
 12.00 11.00 3.00 1.00 . 3.00 6.00 7.00 6.00 2.00 11.00 4.00 
 11.00 11.00 1.00 3.00 3.00 . 3.00 8.00 7.00 4.00 12.00 2.00 
 14.00 12.00 4.00 6.00 6.00 3.00 . 11.00 10.00 7.00 13.00 5.00 
 13.00 11.00 8.00 7.00 7.00 8.00 11.00 . 4.00 7.00 11.00 9.00 
 13.00 11.00 7.00 6.00 6.00 7.00 10.00 4.00 . 6.00 12.00 8.00 
 13.00 11.00 3.00 1.00 2.00 4.00 7.00 7.00 6.00 . 10.00 4.00 
 14.00 9.00 11.00 10.00 11.00 12.00 13.00 11.00 12.00 10.00 . 11.00 
 11.00 11.00 1.00 3.00 4.00 2.00 5.00 9.00 8.00 4.00 11.00 . 
 ; 
 
 
 USERTYPE Region#5 STEPMATRIX = 9 
 
 
 
 
 
 
 
 
 
 
 0 1 2 3 4 5 6 7 8 
 . 5.00 2.00 2.00 3.00 5.00 6.00 4.00 10.00 
 5.00 . 5.00 5.00 6.00 5.00 7.00 6.00 8.00 
 2.00 5.00 . 1.00 1.00 3.00 5.00 3.00 9.00 
 2.00 5.00 1.00 . 2.00 4.00 4.00 2.00 8.00 
 3.00 6.00 1.00 2.00 . 2.00 5.00 3.00 10.00 
 5.00 5.00 3.00 4.00 2.00 . 6.00 5.00 5.00 
 6.00 7.00 5.00 4.00 5.00 6.00 . 5.00 9.00 
 4.00 6.00 3.00 2.00 3.00 5.00 5.00 . 8.00 
 10.00 8.00 9.00 8.00 10.00 5.00 9.00 8.00 . 
 ; 
 
 
 USERTYPE Region#6 STEPMATRIX = 9 
 
 
 
 
 
 
 
 
 
 
 0 1 2 3 4 5 6 7 8 
 . 1.00 2.00 2.00 2.00 1.00 2.00 2.00 3.00 
 1.00 . 2.00 1.00 2.00 1.00 2.00 2.00 2.00 
 2.00 2.00 . 1.00 3.00 1.00 2.00 2.00 3.00 
 2.00 1.00 1.00 . 2.00 1.00 1.00 2.00 2.00 
 2.00 2.00 3.00 2.00 . 1.00 3.00 2.00 3.00 
 1.00 1.00 1.00 1.00 1.00 . 1.00 2.00 2.00 
 2.00 2.00 2.00 1.00 3.00 1.00 . 1.00 3.00 
 2.00 2.00 2.00 2.00 2.00 2.00 1.00 . 3.00 
 3.00 2.00 3.00 2.00 3.00 2.00 3.00 3.00 . 
 ; 
 
 
 USERTYPE Region#7 STEPMATRIX = 10 
 
 
 
 
 
 
 
 
 
 
 
 0 1 2 3 4 5 6 7 8 9 
 . 1.00 2.00 2.00 4.00 3.00 4.00 4.00 3.00 5.00 
 1.00 . 1.00 1.00 3.00 2.00 4.00 4.00 2.00 5.00 
 2.00 1.00 . 2.00 4.00 1.00 4.00 3.00 3.00 4.00 
 2.00 1.00 2.00 . 2.00 1.00 3.00 3.00 1.00 4.00 
 4.00 3.00 4.00 2.00 . 3.00 4.00 3.00 3.00 4.00 
 3.00 2.00 1.00 1.00 3.00 . 3.00 3.00 2.00 4.00 
 4.00 4.00 4.00 3.00 4.00 3.00 . 1.00 2.00 2.00 
 4.00 4.00 3.00 3.00 3.00 3.00 1.00 . 2.00 1.00 
 3.00 2.00 3.00 1.00 3.00 2.00 2.00 2.00 . 3.00 
 5.00 5.00 4.00 4.00 4.00 4.00 2.00 1.00 3.00 . 
 ; 
 
 
 USERTYPE Region#8 STEPMATRIX = 6 
 
 
 
 
 
 
 
 0 1 2 3 4 5 
 . 1.00 2.00 1.00 1.00 2.00 
 1.00 . 1.00 2.00 2.00 3.00 
 2.00 1.00 . 3.00 2.00 3.00 
 1.00 2.00 3.00 . 1.00 2.00 
 1.00 2.00 2.00 1.00 . 1.00 
 2.00 3.00 3.00 2.00 1.00 . 
 ; 
 
 
 USERTYPE Region#9 STEPMATRIX = 8 
 
 
 
 
 
 
 
 
 
 0 1 2 3 4 5 6 7 
 . 1.00 1.00 1.00 3.00 3.00 4.00 3.00 
 1.00 . 2.00 2.00 2.00 2.00 3.00 3.00 
 1.00 2.00 . 2.00 4.00 3.00 4.00 2.00 
 1.00 2.00 2.00 . 2.00 3.00 3.00 4.00 
 3.00 2.00 4.00 2.00 . 3.00 3.00 4.00 
 3.00 2.00 3.00 3.00 3.00 . 3.00 4.00 
 4.00 3.00 4.00 3.00 3.00 3.00 . 6.00 
 3.00 3.00 2.00 4.00 4.00 4.00 6.00 . 
 ; 
 
 
 USERTYPE Region#10 STEPMATRIX = 5 
 
 
 
 
 
 
 0 1 2 3 4 
 . 1.00 2.00 2.00 1.00 
 1.00 . 1.00 1.00 1.00 
 2.00 1.00 . 1.00 2.00 
 2.00 1.00 1.00 . 1.00 
 1.00 1.00 2.00 1.00 . 
 ; 
 
 
 USERTYPE Region#11 STEPMATRIX = 6 
 
 
 
 
 
 
 
 0 1 2 3 4 5 
 . 1.00 2.00 2.00 4.00 5.00 
 1.00 . 2.00 1.00 3.00 4.00 
 2.00 2.00 . 1.00 3.00 4.00 
 2.00 1.00 1.00 . 2.00 3.00 
 4.00 3.00 3.00 2.00 . 1.00 
 5.00 4.00 4.00 3.00 1.00 . 
 ; 
 
 
 USERTYPE Region#12 STEPMATRIX = 12 
 
 
 
 
 
 
 
 
 
 
 
 
 
 0 1 2 3 4 5 6 7 8 9 B D 
 . 1.00 1.00 2.00 2.00 3.00 5.00 5.00 3.00 2.00 3.00 4.00 
 1.00 . 1.00 2.00 1.00 3.00 5.00 5.00 3.00 2.00 3.00 5.00 
 1.00 1.00 . 1.00 1.00 2.00 3.00 4.00 3.00 2.00 3.00 4.00 
 2.00 2.00 1.00 . 2.00 1.00 4.00 5.00 4.00 3.00 2.00 5.00 
 2.00 1.00 1.00 2.00 . 2.00 4.00 5.00 3.00 2.00 3.00 5.00 
 3.00 3.00 2.00 1.00 2.00 . 3.00 6.00 5.00 3.00 2.00 6.00 
 5.00 5.00 3.00 4.00 4.00 3.00 . 6.00 5.00 3.00 3.00 7.00 
 5.00 5.00 4.00 5.00 5.00 6.00 6.00 . 4.00 5.00 6.00 5.00 
 3.00 3.00 3.00 4.00 3.00 5.00 5.00 4.00 . 4.00 5.00 5.00 
 2.00 2.00 2.00 3.00 2.00 3.00 3.00 5.00 4.00 . 1.00 5.00 
 3.00 3.00 3.00 2.00 3.00 2.00 3.00 6.00 5.00 1.00 . 6.00 
 4.00 5.00 4.00 5.00 5.00 6.00 7.00 5.00 5.00 5.00 6.00 . 
 ; 
 
 TYPESET * Tn_Tv = Tn_Tv: 1 - 622 , Region#1: 623 , Region#2: 624 , Region#3: 625 , Region#4: 626 , Region#5: 627 , Region#6: 628 , Region#7: 629 , Region#8: 630 , Region#9: 631 , Region#10: 632 , Region#11: 633 , Region#12: 634 ; 
 
 END;