NEXUS
[File created by TreeBASE:  7/26/07  21:11:37]
[Matrix accession#: M2619]

BEGIN TAXA;
	TITLE M2619;
	DIMENSIONS  NTAX=11;
	TAXLABELS
		Platythamnion_yezoense	Antithmanion_densum	Antithamnionella_sp_ATN	Antithamnion_sparsum_ASW	Antithamnion_sparsum_ASM	Antithamnion_sparsum_ASB	Antithamnion_nipponicum	Antithamnion_kylinii	Antithamnion_defectum	Antithamnion_callocladum	Antithamnion_aglandum
	;
END;

BEGIN CHARACTERS;
	TITLE M2619;
	DIMENSIONS NCHAR=398;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Platythamnion_yezoense         -------------TATATGTG--GCGAACAGGCT------GTG----CTTC------GGT---------------GCTGTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGCTTAACATTCTTCACGCGCACTA-CTA---ATTTATAACATTTTT-TTTAATTAAACCTAAAAA------------------CCATTTTCAAACAA--AAACAAATCAT-----AATATTTTT
		Antithmanion_densum            AAATTTTT----------GAGATGCTAT--GGTTATCT--GTATTACACA--------GTT----CC------TGGCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATAT---ATTTATCCCGCGAACAAACTT--GATTTTTATTT---TTATTTTTTTTAAACCAAACC--------------------------AAACTTA-----AAACCCC-----AAAATTTTT
		Antithamnionella_sp_ATN        -AACTTT-----------GTAT--------GGTATTCTTTGATT--CAATTCTTTTTCTGTTTTTGTTTCAAAGTTCCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTACAT---TTTTTTCACGCGAACCA-CTTG--ATTTATTTTTTTTTT-GAACCTTGAACCCAAAATGTAGGGAGGGGGGAAGTTCCCTTCCCAAACCATAAAATAATTCATTTATGAATTTCTGT
		Antithamnion_sparsum_ASW       AAATTTTT----------GAGTTGCCAT--GGTTATCT--GTATA-CACA--------GTT----CC------TGGCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATAT---ATTTATCCCGCGAACAAACTT--GATTTTTATTTTTTTT----TTTTTAAACCAAACC--------------------------AAACTTAT----AAACCCC-----AATATTTTT
		Antithamnion_sparsum_ASM       AAATTTTT----------GAGTTGCCAT--GGTTATCT--GTATA-CACA--------GTT----CC------TGGCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATAT---ATTTATCCCGCGAACAAACTT--GATTTTTATTTTTTTT----TTTTTAAACCAAACC--------------------------AAACTTAT----AAACCCC-----AATATTTTT
		Antithamnion_sparsum_ASB       AAATTTTT----------GAGTTGCCAT--GGTTATCT--GTATA-CACA--------GTT----CC------TGGCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATAT---ATTTATCCCGCGAACAAACTT--GATTTTTATTTTTTTT---TTTTTTAAACCAAACC--------------------------AAACTTAT----AAACCCC-----AATATTTTT
		Antithamnion_nipponicum        AAATTTATTATATA----TATATGC---TATAATT-----ATG---CACAT----GTGGTTGAAGCC--TTTATTGCTCTCGTCTTTTTCTCTTGCAGTAAACACTTTTGTTGCAGTTTTCACAAGCTCCTATTAGT-GTTTACTGTTTAAGGG-CGAAGATTTGATT----------------------------------GACGCTTTGTGCTCCTGCTTTTGT-----TTGT-GTGCATAAA--TCTATA----CATATATATATAAATATATAT---AT--ATCCCGCGAACGAACTTTTGATTTTT---TTTTTT--TTTCTTAAACCCAAACC--------------------------AAACCT------AAACCCCC---AATTTTTTTT
		Antithamnion_kylinii           AAATTTTT----------GAGATGCCAT--GGTTATCT--GTATTATGCA--------GTT----CC------TGGTTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATAT---ATATATCCCGCGAACAAACTT--GATTTTTATTTTTTTTATTTTTTTTAAACCAAACC--------------------------AAACTTAT----AAACCCC-----AATATTTTT
		Antithamnion_defectum          AAATTTTT----------GAGTTGCCAT--GGTTATCT--GTATA-CACA--------GTT----CC------TGGCTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATAT---ATTTATCCCGCGAACAAACTT--GATTTTTATTTTTTTTATTTTTTTTAAACCAAACC--------------------------AAACTTAT----AAACCCC-----AATATTTTT
		Antithamnion_callocladum       GAATTTATTATGT-----TATATGCTTATATGTTT-----GTG---CACACACTCGCGATTGATGCCGCTTTTTGGCTCTCGTCTTTACCCCC--CAGTGAGCACTTTTGTCGCAGTTCGCAAGAGCTCCTATTAGTCGTTTACTGG----GGG-CGG-GATTTGATT----------------------------------GAGTCCTTGTGCTCTCGCTATGGT---TGCTGCGGTGCATATTCCTCTATAT---CATGTATACATAAAT-TATAT---AT--ATCCCGCGAACGAACTTTTTAATTCTTATTTTTTT--TTTCTTAAACCCAAACC--------------------------AAACCA----AAAAACC----AAAATTATTTTT
		Antithamnion_aglandum          AAATTTTATATATATATATATATGCTTATATCTTTT----GTG---CACATG---GCGGTCGATGCC----TTGTGCTCTCATCTTTTCC----GCAGTACACATCTGTGTGGCAGTGAACTTTTCATTCCGTTGGT-GTGTACTGTTTAAGGAACTAAGATTCGATTTGTGAGCTGCTGCCTTATTCTGTGCGCGCCACTTGACGCCTTGCGCTCTCGCTTTAACAAATATTGTGGTGTGTACAATTGTATACGCATATGTATATGTATATATATAT---ATTTATCCCGCGAACAAACTTTTGATTTTTATTTTTTTT--TTTAACTAAACCAAACC--------------------------AAACCA------AAACCCC-----AAATTTTTT
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 398 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;